TCONS_00057495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057495
Unique NameTCONS_00057495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057495 ID=TCONS_00057495|Name=TCONS_00057495|organism=Clytia hemisphaerica|type=transcript|length=446bp
GAAATAGACACCAATTAGCCAAAGTGAGCGCCAAacgatctttttcaaaa
tatgttttgttgTCTGGGCATTGGATCTTTGTTGGATTGTTGAGTTTGCT
CTTACGGCGACCCTTTTTCTCGATTTCTTGAAGACAAATAAGATCATGAG
GTATAGCACTGGTAAAGATATAATCGTGGTGATGGTAATGGCAAAAGAAA
TATAACTGCTGTTTAAATTGCCTAGAATCACATTAATAAGCATCGGGAAG
GCTGGTACAAACCAACACAACACTATTAAGATCCATAACCGCTTCTCTGT
TATGAGATCATCAAAAGTGCTTGTTCTTGAAATCTTGAGATATTTGATAG
CGGCTAACATGATGATTGTCAAAGATGAAGCTGAGGTCATGCTTAACAGG
ACCAAACCAAAAATGGCGATTGGGAACGATCCAAAATAAAATGTCC
Run BLAST on NCBI

protein sequence of TCONS_00057495-protein

>TCONS_00057495-protein ID=TCONS_00057495-protein|Name=TCONS_00057495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
TFYFGSFPIAIFGLVLLSMTSASSLTIIMLAAIKYLKISRTSTFDDLITE
KRLWILIVLCWFVPAFPMLINVILGNLNSSYISFAITITTIISLPVLYLM
ILFVFKKSRKRVAVRANSTIQQRSNAQTTKHILKKIVWRSLWLIGVYF
Run BLAST on NCBI

transcript from alignment at scaffold_289:293437..293882

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057495 ID=TCONS_00057495|Name=TCONS_00057495|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at scaffold_289:293437..293882 (Clytia hemisphaerica)
GGACATTTTATTTTGGATCGTTCCCAATCGCCATTTTTGGTTTGGTCCTG
TTAAGCATGACCTCAGCTTCATCTTTGACAATCATCATGTTAGCCGCTAT
CAAATATCTCAAGATTTCAAGAACAAGCACTTTTGATGATCTCATAACAG
AGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGTTTGTACCAGCCTTC
CCGATGCTTATTAATGTGATTCTAGGCAATTTAAACAGCAGTTATATTTC
TTTTGCCATTACCATCACCACGATTATATCTTTACCAGTGCTATACCTCA
TGATCTTATTTGTCTTCAAGAAATCGAGAAAAAGGGTCGCCGTAAGAGCA
AACTCAACAATCCAACAAAGATCCAATGCCCAGAcaacaaaacatatttt
gaaaaagatcgtTTGGCGCTCACTTTGGCTAATTGGTGTCTATTTC

Coding sequence (CDS) from alignment at scaffold_289:293437..293882

>TCONS_00057495 ID=TCONS_00057495|Name=TCONS_00057495|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_289:293437..293882 (Clytia hemisphaerica)
ACATTTTATTTTGGATCGTTCCCAATCGCCATTTTTGGTTTGGTCCTGTT
AAGCATGACCTCAGCTTCATCTTTGACAATCATCATGTTAGCCGCTATCA
AATATCTCAAGATTTCAAGAACAAGCACTTTTGATGATCTCATAACAGAG
AAGCGGTTATGGATCTTAATAGTGTTGTGTTGGTTTGTACCAGCCTTCCC
GATGCTTATTAATGTGATTCTAGGCAATTTAAACAGCAGTTATATTTCTT
TTGCCATTACCATCACCACGATTATATCTTTACCAGTGCTATACCTCATG
ATCTTATTTGTCTTCAAGAAATCGAGAAAAAGGGTCGCCGTAAGAGCAAA
CTCAACAATCCAACAAAGATCCAATGCCCAGAcaacaaaacatattttga
aaaagatcgtTTGGCGCTCACTTTGGCTAATTGGTGTCTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036236XLOC_036236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057495-exon-scaffold_289-1491911889:293437..293882TCONS_00057495-exon-scaffold_289-1491911889:293437..293882Clytia hemisphaericaexon
TCONS_00057495-exon-scaffold_289-1510915933:293437..293882TCONS_00057495-exon-scaffold_289-1510915933:293437..293882Clytia hemisphaericaexon
TCONS_00057495-exon-scaffold_289-1575043694:293437..293882TCONS_00057495-exon-scaffold_289-1575043694:293437..293882Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057495-proteinTCONS_00057495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:293437..293882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.57737	0.540527	0.416076	1.32962	0	0.0996961	0.298673	0	0.255005	0.27366	0	0	0	0	0	0	0.220015	0.18793	0	0.34681	0.241002	0.22929	0.175651	0.439976
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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