TCONS_00057498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057498
Unique NameTCONS_00057498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057498 ID=TCONS_00057498|Name=TCONS_00057498|organism=Clytia hemisphaerica|type=transcript|length=298bp
AGCGGATCGGTTTCAGAATCTTCTGGAAGACTGCATTCTGAAGTTTTTAG
GCCGAGATGGGAagcaatatttacaaaatagtCGTTAAAAATTTTTGCTA
TTGAGGCTTCATCATCAacaagttttgatttatatgaATCGTCAAGCAAG
AAGATTTTCTCGTGATGTTGGACTTTCTTTGAGAAATATGGTTTTGCaga
tttccagaaattttctgaTGTCCCTAAATCACGAAAGTATTTTCTCTTTG
CTTTCCTATTCAaatttacaatataatttttttgtttgcgaTACAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_289:341962..342259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057498 ID=TCONS_00057498|Name=TCONS_00057498|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at scaffold_289:341962..342259 (Clytia hemisphaerica)
CCTTGTAtcgcaaacaaaaaaattatattgtaaattTGAATAGGAAAGCA
AAGAGAAAATACTTTCGTGATTTAGGGACAtcagaaaatttctggaaatc
tGCAAAACCATATTTCTCAAAGAAAGTCCAACATCACGAGAAAATCTTCT
TGCTTGACGATtcatataaatcaaaacttgtTGATGATGAAGCCTCAATA
GCAAAAATTTTTAACGactattttgtaaatattgctTCCCATCTCGGCCT
AAAAACTTCAGAATGCAGTCTTCCAGAAGATTCTGAAACCGATCCGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036239XLOC_036239Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057498-exon-scaffold_289-1491911889:341962..342259TCONS_00057498-exon-scaffold_289-1491911889:341962..342259Clytia hemisphaericaexon
TCONS_00057498-exon-scaffold_289-1510915933:341962..342259TCONS_00057498-exon-scaffold_289-1510915933:341962..342259Clytia hemisphaericaexon
TCONS_00057498-exon-scaffold_289-1575043694:341962..342259TCONS_00057498-exon-scaffold_289-1575043694:341962..342259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:341962..342259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.38805	0.450563	1.25887	6.43966	3.81653	4.60448	3.66352	0.242975	0	2.01581	0.530046	0.529309	0.549693	0.225961	0.829367	0	0.612375	0.423014	2.21327	1.75666	0.211065	0.456265	0.829623	0	0.514805	1.0913	0	1.76671	0.257689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top