TCONS_00057500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057500
Unique NameTCONS_00057500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057500 ID=TCONS_00057500|Name=TCONS_00057500|organism=Clytia hemisphaerica|type=transcript|length=831bp
TAGAGTTTTATATACCTGATTGCTTTTAAATCTAACGGATCTCGGAGTTG
AAGGAGTTGCCTGTTGAACATCATTTGCTGTCTGTTGAGAGAAagaaaaa
tcttattaagagactatttttaggaaattaactAAAAAGCTATACTTAGT
ACTTCATCAAAATCTAACAGAAAATTGTTAAAGGTTTGGAACTGGCCTAG
AATAACTTCACTTTGATTCACATAAAATAATACACTTCATTATTCTATTA
TCAGAATCCCAGAAATAGGAATCTAATATACTGTTAAGTTGCAAACTGAT
AATAGATTTACAAACTTGATCAAGGTCTTCTTGTAACTCTGCTGTTGTTT
CTGGATCTGCACTAATGTCAAGGTGGCTTGAATAACGCGTCATATAAGAA
AGAAATTGTGCTAAGATCTAAACTCAATTACTACATTATGCTCAAAACTa
tatttttgcctatttttaaacaattttaagcatttaaatttcaaagatCT
TAAAATTCATACCTGATTATTGGAACCATTGTTGGCAATTCTTCGAGTGA
GTCGTCAATCATTTGCTCAGGCCTTGGCTTAACTTGTTTGCTTCCTGACT
TGTTTTGGACCTTTTGCGTGTCTGTTTTTTCATGTCTCTTGAGAAACCAC
AATGACCTGAACTTTTTTGAGTAGATATGGCAAAGCGGTTCTTTCTTTGC
GATGCATTTTAATTTATGGCGTTGAAAGTTGTCTTTCCTGGCAAATACTT
TGTTGCACTTGCCACATATTAATTCCTTCTCTTCCTTGTGAGTCTTTTTG
TGCCTGCTTACGCTTTTCTTatgctttaaaa
Run BLAST on NCBI

protein sequence of TCONS_00057500-protein

>TCONS_00057500-protein ID=TCONS_00057500-protein|Name=TCONS_00057500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
LKHKKSVSRHKKTHKEEKELICGKCNKVFARKDNFQRHKLKCIAKKEPLC
HIYSKKFRSLWFLKRHEKTDTQKVQNKSGSKQVKPRPEQMIDDSLEELPT
MVPIIRYEF
Run BLAST on NCBI

transcript from alignment at scaffold_289:369957..370787

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057500 ID=TCONS_00057500|Name=TCONS_00057500|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at scaffold_289:369957..370787 (Clytia hemisphaerica)
ttttaaagcatAAGAAAAGCGTAAGCAGGCACAAAAAGACTCACAAGGAA
GAGAAGGAATTAATATGTGGCAAGTGCAACAAAGTATTTGCCAGGAAAGA
CAACTTTCAACGCCATAAATTAAAATGCATCGCAAAGAAAGAACCGCTTT
GCCATATCTACTCAAAAAAGTTCAGGTCATTGTGGTTTCTCAAGAGACAT
GAAAAAACAGACACGCAAAAGGTCCAAAACAAGTCAGGAAGCAAACAAGT
TAAGCCAAGGCCTGAGCAAATGATTGACGACTCACTCGAAGAATTGCCAA
CAATGGTTCCAATAATCAGGTATGAATTTTAAGatctttgaaatttaaat
gcttaaaattgtttaaaaataggcaaaaatatAGTTTTGAGCATAATGTA
GTAATTGAGTTTAGATCTTAGCACAATTTCTTTCTTATATGACGCGTTAT
TCAAGCCACCTTGACATTAGTGCAGATCCAGAAACAACAGCAGAGTTACA
AGAAGACCTTGATCAAGTTTGTAAATCTATTATCAGTTTGCAACTTAACA
GTATATTAGATTCCTATTTCTGGGATTCTGATAATAGAATAATGAAGTGT
ATTATTTTATGTGAATCAAAGTGAAGTTATTCTAGGCCAGTTCCAAACCT
TTAACAATTTTCTGTTAGATTTTGATGAAGTACTAAGTATAGCTTTTTag
ttaatttcctaaaaatagtctcttaataagatttttctTTCTCTCAACAG
ACAGCAAATGATGTTCAACAGGCAACTCCTTCAACTCCGAGATCCGTTAG
ATTTAAAAGCAATCAGGTATATAAAACTCTA

Coding sequence (CDS) from alignment at scaffold_289:369957..370787

>TCONS_00057500 ID=TCONS_00057500|Name=TCONS_00057500|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_289:369957..370787 (Clytia hemisphaerica)
ttaaagcatAAGAAAAGCGTAAGCAGGCACAAAAAGACTCACAAGGAAGA
GAAGGAATTAATATGTGGCAAGTGCAACAAAGTATTTGCCAGGAAAGACA
ACTTTCAACGCCATAAATTAAAATGCATCGCAAAGAAAGAACCGCTTTGC
CATATCTACTCAAAAAAGTTCAGGTCATTGTGGTTTCTCAAGAGACATGA
AAAAACAGACACGCAAAAGGTCCAAAACAAGTCAGGAAGCAAACAAGTTA
AGCCAAGGCCTGAGCAAATGATTGACGACTCACTCGAAGAATTGCCAACA
ATGGTTCCAATAATCAGGTATGAATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036241XLOC_036241Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057500-proteinTCONS_00057500-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057500-exon-scaffold_289-1491911889:369957..370787TCONS_00057500-exon-scaffold_289-1491911889:369957..370787Clytia hemisphaericaexon
TCONS_00057500-exon-scaffold_289-1510915933:369957..370787TCONS_00057500-exon-scaffold_289-1510915933:369957..370787Clytia hemisphaericaexon
TCONS_00057500-exon-scaffold_289-1575043694:369957..370787TCONS_00057500-exon-scaffold_289-1575043694:369957..370787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:369957..370787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0645815	0	0	0.0607826	0	0	0.048065	0	0	0	0	0	0	0	0.0856367	0.0877748	0.303164	0.0634479	0	0	0	0	0	0	0.0782107	0.0560715	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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