TCONS_00057508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057508
Unique NameTCONS_00057508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057508 ID=TCONS_00057508|Name=TCONS_00057508|organism=Clytia hemisphaerica|type=transcript|length=660bp
AGTTGTAATTTAGTAGAGATCGGTTGATGATTGAGAGTCAATTTGGGATG
TTGGATTGTTGAGTTGCCAGAGATTAGATATTgagtttttgatgcattaa
aTTTAAGTCCATTTTGATATCCAAAGTTTATACATTTGTCTACCATCGTT
TGGAGGTGGTTTAGAGTGGAGCTTAGTAGGATTATGTCATCAGCAAATAC
AATGATTGATGTGTTTAAATTTCCAGGCAGATATGTGCCAATGTTGAGTT
CCTGAATCGTGTCAATTAAGTCTTCTGTGTAGATATTGTATAGGTACGGT
GAGAGGAGTGATCCTTGGCGGACGCCTTGTGATAAGTGAAAGGGGTTTGG
TTTTTGTATCTGGTGGCAGCTTCATCGTTAGCGTAGAGTTTTatcagaaa
tttcaaaacagtttcaggtaaaagatttttgtttttgagtttttttgaag
aGAAGGTGCCAGTTGCAACAATCAAAGGCCTTCTCAGCATCCATGCTACA
TAAGTATACAGGAGAGTTTTTTGTGTTGTAGTGTGAGATTGTGTCTCTGA
TAAGTAGCTCTGCGTGAATGGTAGTTGCATCTGAGGTGAATTCGAATTGA
GAGGTTTTGTGTTGCTTCAGAGTAGGGCATTTGTTCATGATAATTTCCGC
TATGTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00057508-protein

>TCONS_00057508-protein ID=TCONS_00057508-protein|Name=TCONS_00057508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MQLPFTQSYLSETQSHTTTQKTLLYTYVAWMLRRPLIVATGTFSSKKLKN
KNLLPETVLKFLIKLYANDEAATRYKNQTPFTYHKASAKDHSSHRTYTIS
TQKT
Run BLAST on NCBI

transcript from alignment at scaffold_29:1207..1866

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057508 ID=TCONS_00057508|Name=TCONS_00057508|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at scaffold_29:1207..1866 (Clytia hemisphaerica)
CAAAAACATAGCGGAAATTATCATGAACAAATGCCCTACTCTGAAGCAAC
ACAAAACCTCTCAATTCGAATTCACCTCAGATGCAACTACCATTCACGCA
GAGCTACTTATCAGAGACACAATCTCACACTACAACACAAAAAACTCTCC
TGTATACTTATGTAGCATGGATGCTGAGAAGGCCTTTGATTGTTGCAACT
GGCACCTTCtcttcaaaaaaactcaaaaacaaaaatcttttacctgaaac
tgttttgaaatttctgatAAAACTCTACGCTAACGATGAAGCTGCCACCA
GATACAAAAACCAAACCCCTTTCACTTATCACAAGGCGTCCGCCAAGGAT
CACTCCTCTCACCGTACCTATACAATATCTACACAGAAGACTTAATTGAC
ACGATTCAGGAACTCAACATTGGCACATATCTGCCTGGAAATTTAAACAC
ATCAATCATTGTATTTGCTGATGACATAATCCTACTAAGCTCCACTCTAA
ACCACCTCCAAACGATGGTAGACAAATGTATAAACTTTGGATATCAAAAT
GGACTTAAAtttaatgcatcaaaaactcAATATCTAATCTCTGGCAACTC
AACAATCCAACATCCCAAATTGACTCTCAATCATCAACCGATCTCTACTA
AATTACAACT

Coding sequence (CDS) from alignment at scaffold_29:1207..1866

>TCONS_00057508 ID=TCONS_00057508|Name=TCONS_00057508|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_29:1207..1866 (Clytia hemisphaerica)
ATGCAACTACCATTCACGCAGAGCTACTTATCAGAGACACAATCTCACAC
TACAACACAAAAAACTCTCCTGTATACTTATGTAGCATGGATGCTGAGAA
GGCCTTTGATTGTTGCAACTGGCACCTTCtcttcaaaaaaactcaaaaac
aaaaatcttttacctgaaactgttttgaaatttctgatAAAACTCTACGC
TAACGATGAAGCTGCCACCAGATACAAAAACCAAACCCCTTTCACTTATC
ACAAGGCGTCCGCCAAGGATCACTCCTCTCACCGTACCTATACAATATCT
ACACAGAAGACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036249XLOC_036249Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057508-proteinTCONS_00057508-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057508-exon-scaffold_29-1491911889:1207..1866TCONS_00057508-exon-scaffold_29-1491911889:1207..1866Clytia hemisphaericaexon
TCONS_00057508-exon-scaffold_29-1510915933:1207..1866TCONS_00057508-exon-scaffold_29-1510915933:1207..1866Clytia hemisphaericaexon
TCONS_00057508-exon-scaffold_29-1575043694:1207..1866TCONS_00057508-exon-scaffold_29-1575043694:1207..1866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:1207..1866 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0890681	0.0871392	0.106084	0.0838287	0.101136	0	0.0662892	0	0.0796978	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0753774	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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