TCONS_00057511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057511
Unique NameTCONS_00057511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057511 ID=TCONS_00057511|Name=TCONS_00057511|organism=Clytia hemisphaerica|type=transcript|length=1691bp
ATAATCCATTTATAGGcctgcaaaaataaagtaataaaagcaattgacat
tttaatgatgtcTAATTTCATAACTGGTCACTATGGAGAAATATTGACCG
GCCACGTGACATTAATCATCCAAccagttttcttaaaaatgattgacagt
tgtattgcagggctataaagtactttaatgggataaactttcgcggggac
ttaatttcacgGATGGCGCTATTGGGTGggaatattttcacgattttgNA
GAAGTCATACTGGAGTACATTCTTCACCAAAAACAAGCCAAcaacaagaa
aatgaaagcCTATGAAAAACAGttGAAAAAAGACGAGAAAACACAAACAG
AAGAGGAAGAGATCGCCAAGGGAGAAGTTGTCACCAAATTTCTCACAACA
GAAAAAGCCATCAAAACAAAACGCGAAAATCCATTCAAAAGTGAGAAAAG
TGAAGACCAAGCTGGCCCTTCATCcaacaagaaaaacaaagaagaggAAA
TCAAAACCATGAATATCAATACGAACGCCCAGGAGAAGAAGAATCTTCCA
AGTTTTTGGATTCCCTCCCTCACACCACAAGCCAGCCAATCAAGAGTAGA
GAAGCCAGACAGTAAAGTGTACTGTCCCATGAGTGGCAAACCTATCAAAC
TAAAAGACTTAATTTCCGTAAAATTCACTCTGGCGCCTGCTGACGAATCA
GATAAGCAGAAATCGATTGTCGCTAGGAAACAGCGTTATATTTGTCCGGT
TACTAGGGACGTTTTAAGTAACACTGTCCGATCGGCGGTGCTGAAACCGT
CCGGTAATGTAGTTTCGATGGAATGCGTTGAGAAGTTTATAAAGAAAGAC
TGGGTTTGTCCGATCACTGGACACAAATTGAAAGAAAAGGATGTCATCGA
GCTAAAACGTGGTGGAACAGGTTACTCGTCCGTTGGTAAAGACTCTCTTG
AAGGAAAAGCGTATGGGCCAACCATGATGGTCAGCTAGAATCATTTATAT
TCACCTTGAAAGAATGTTGCATGCGTTGTTATACGTGCGTTGTCCGGAAG
AGGAGGTGCTTCGATGGATTAAATATTAACTAACTTCCACACGTTTTACT
TACGTAATATCAGTTGCGTAGCCAACAGGGTGCAAGATTTGTATAAGAGA
GAGAGAGTTGGTTGAGCCATTGAGTTCAGAGTCCCGAATGGGATAGAGAG
GAAACTCTTGGCTTGGAAATGAAGCTACTTTTTCCCATCCAAACTGCGTA
GTTTTCATACAAACGtcgtattgaaaataaaattcattgcTTTGGTTTTG
AAAAATGTACCACGTGACAATGTGTGGTTTCTCAATACGGcgttttttct
tgcttgagaaaggttgaagattcctctctagctctcttgggctttaaact
caatgggctGAACCCTGTTATGACATCTCTTTACTGGCTTATGAAAACAT
TTGCACTGTTAAAGGACTGAAAACTTTATAACAGCTGAGACTGACCTGAA
TTTTAGCGACCCTTTTACCAGATAAAGAATTTTCTTCATTATTGTGAGAA
TAAATACCTAAAAGTTTGCAAATAATACTCTGAAGCCACTTTATGGTAGT
GATTCGAAACCACAGATTTTAATACTCGCTCACACACACTTTGCgttaaa
attcttttcttttcgaacataatttaaaatttcgTATAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_291:114476..121056+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057511 ID=TCONS_00057511|Name=TCONS_00057511|organism=Clytia hemisphaerica|type=transcript|length=6581bp|location=Sequence derived from alignment at scaffold_291:114476..121056+ (Clytia hemisphaerica)
ATAATCCATTTATAGGcctgcaaaaataaagtaataaaagcaattgacat tttaatgatgtcTAATTTCATAACTGGTCACTATGGAGAAATATTGACCG GCCACGTGACATTAATCATCCAAccagttttcttaaaaatgattgacagt tgtattgcagggctataaagtactttaatgggataaactttcgcggggac ttaatttcacgGATGGCGCTATTGGGTGggaatattttcacgattttgNA GAAGTCATACTGGAGTACATTCTTCACCAAAAACAAGCCAAcaacaagaa aatgaaagcCTATGAAAAACAGGTACTTTAATAGTTTTCTCCTGGGTCAG TCCCCCAGAAATTCTAGACGACCCGATTGTCAAATCCCacccctgaaaat gaaaaaaaatcgttttcacACGCCTTTTGTGTTTTCCCTCCCAGAAATGT ttaaatccccccccccctcttcaCGACCTGGATCCGGGCAATTAATTTTT ATGCAGCTTATATTTTAAATTGCACACCAAAatgtagttttgaaaaaatt tcaccacaagagaaaaaaaattagattgcCAATATCTaaataaaatgctt tttttgaattttatttacaaGAAATGTAAATGATAttcacgctttttctt ttataagaataacttctataagaatatcagggtgagatttcgggtttaaa acaataggccgaTTGTTtcgaacaatagaaaaataagaataatgctcacc ctcaaccaaagtacactattcttataaaaaaaagcgtgtactgttttctg atttctgttaaaagttgaaaagttttttccCCAGAAAGATTTTGTTGCAC CTTTTTAAACCCCCCCTGGACTTCCATTTTTccttttgccccccccccct ttttggaaatttttttgaaaaaatccccCCAgctaaaaggggggggggga gaaaaCTAAGCttttccttttcaaattttcttaactgCTGATgtgacttt gaaaaaaaaagccatgttcttttattatttgcagggtgtctacgggacct tgaaaaccttgaaaatgaaccacccaaccttgaaaaccttgaaaactatc aattttctgggaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgtttgacatattttg agttttatttagaaatatttcgcggatgaggcccttccaaatttccattg ggatttaatttcgcggattttcgcggatgacacccaagtCCGCGAAatac gcgaaatttaatccccgcgaaagtttatcccattaaagtatgttATTCCA TTAATAACAGCTACACATGACATTTTATagctaaaatgtaaaaaagcctT TGTACCTCATTTTAGGAAAGTTTTGAGCATCATATTTACCCACATTACTG GGAAATCCTATTTCATAAACAGGGTAACGTGTGTTTTTGTTGTAAGTTTT CCTGATATTGTCACTTTCACccgatttcagatttttaaaaagaaaataaa aaaaacttaaaacatcaattttatttttattttatttccatcctcctgtc caaaacttttcctcataatgtccgtaaaccagaaaataaaaaagtaattg ccttaaTAGCAGTATTTCATCTTttcttaaaaactttgaaacataATATG ATTATTAAATCATCTTCTCTCTcgtaaaaaataacaataagaaaaaacaa caacataatATGACACGCCATGGTAAAAATTGTACGGCAGGTGCTGTGTA CACATATCATGAAAAGCAGAAAGACACCAAACAATCAGGATGGGGTTCGC AACAAGCTCGATACAGTAAAGACTCCATCAAAGATTTTGACTGCTGCTCA TTGACTCTTCAGCCCTGCAAGGACCCAGTAGTGACAAAAGAAGGCCACCT GTATGAGAGAGAAGTCATACTGGAGTACATTCTTCACCAAAAACAAGCCA AcaacaagaaaatgaaagcCTATGAAAAACAGGTACTTTAATAGTTTTCT CTTGGGTCAGTCCCCCAGAAATTCTAGACGACCCGGTTGTCAAATCCCac ccctgaaaatgaaaaaaaatcgttttcacACGCCTTTTGTGTTTTCCCTC CCAGAAATGTTGAAATCCCCCCcccttttcggcccaggtccAGGGGACcg ttcggggacccccgttcggtgtccgggaggccccgaaatNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNtctacgggaccttgaaaaccttgaaaatgaaccac ccaaccttgaaaaccttgaaaactatcaattttctgggaaaaaccttgaa aaccttgaaaaatcgctaaaaatcttgaaaagcaCTTCTTTATCATACAA TCTTTTCAACAGGGCAGTGGTTGAGTGTAGGTTTTTCTCTAGAATTGCAA ATTGAGGTATCTTGCCGGACATCCCTCTACCATGATTTTTCCGATTTAGA GtaatctgaaaaattaagaacgcatttttaagaacatttcagctGAAAAA TGCTAAGGAAATAAGCACATACAGGCTCAGCAAAGTTTTAactgttttaa taaaaaaaaacgtgtacttcatTAAATCATGTAAAAATATCTCTATAAAA TTGCCTTTTGATTGATGGGTTGAAGCCATTGCATAAGGGTGACCGGACTG AATTTTCTATagaatttcctaaggggggtctgaattttcaaatgtatttT CTAAGGGGTTACCACCTAGGGATTCTCCCAATGTATTACAAGGTTTTCAG TACAACTAACCAAAGACAAAATGGAATTTTTAATACACTAATTTTGCACT GATTTTTTGCCTGACCACTTTTTCTGCCCACCCTGTATGGCTCATATGGC TAAAGGATATAAAAGTTATTTCTTATATCTATTAGCCTTTGAATATTTGT TTTTCACGATGTCTGCTAGTTGTATCTTACAAACCTATCTGAGAGCCATG TCAActgagtatcaaaaaaccttgaaaaatgtcaacattttttgccaaaa agactttaaaaaccacttaaaaatgatcaaaacaaccttgaaaaccttga aaatcccgAAAGAAAATCTATACTTCTTTAAACATTGATCCTGAGGAGGG AAATATAATTAGAAAATACCTCGTTGGATGAATAattggaaaatgaagat gaaaaatgagcATGAAAGAAAATCTTTTCCGAAGACCCTTTTTACTTTGG CTAAAAATAAACCATCTGAGCCAAACAAATTCtttcaaagatgtttttct tcATTCAAATAAGGTTATCAAAGttgaaataatcaaataaacgaaaatgt accgggtgacccacaaATAATTCAGAATTTTGTTGGCTAGATCAGGCAGA AATTAACTTTTTATAACGCAATGGTGAaatgtttaaaggttttgttttta aataagagtgatatcgtttgcttactcatcaattttaatcacAACTGTTT CACATTGGAttaacacggatgtggagcaagattggtcagatataggaaaa gaaaaacatttttttgcatatatcagcataatataactaaagcaagacac tgtcctggtataaaatatgtgtcttatatgaaacgggaacacttatataa aaacaaaacctttaaacacTGGTCACTTTAAAAATTAGACTGTAGTGTAG GTCATATAATTTTTCAGTTGATTCcttttttctaattcagttGAAAAAAG ACGAGAAAACACAAACAGAAGAGGAAGAGATCGCCAAGGGAGAAGTTGTC ACCAAATTTCTCACAACAGAAAAAGCCATCAAAACAAAACGCGAAAATCC ATTCAAAAGTGAGAAAAGTGAAGACCAAGCTGGCCCTTCATCcaacaaga aaaacaaagaagaggAAATCAAAACCATGAATATCAATACGAGTGAGTTT CCTTTTGGTTCGAAAGTTGATTCAAACCCTGCAATtatacgcttttttat aagaatagtgtaatTTGGCTAagggtgagcattatttttattctattgtt ctaaacaataggcctatttttctaactctgaaatctcacccttttattct tatagaagttattcttatatgTAGGTATTTGGTAGTGGGGTTAATTAGTA TAAGAAAACTGCAAATGGTTTTTTGACTCAATTTTGCACACTAACATTAT ATCAAATGTAATAACTTTTGGCCGAGAGAGGCAAAATTTATAGGGCCTTC ATTACCCTTGGAAACCGAAATAACGGTTGTTCGAGTTTCCTTAGTAACGG GAAACTTTTtcgttaaaaaatgaaaatttgttcgTGCCAATCGAAAGAAc acaaatttttgataaattagttaccttatcggccctttttacgccggccc tttttGGCGTTATACTTGGGCTCGTgtcgtaataagggccggcgtaaaaa gggccgataaggtatattaaACATGATCAAAAGTTTTGACTGTTTGAATT TTGTCATTGATGTCATTATTTAGCCCACTGCAATTTAAGGCATATTTCAA AATGCCatagcttttctcaaaatttgcaaaagtgtTCTCTGAtgaattta aaaacttttggtCGAGAGGGGTAAAGTTTTGAAGTCCTAAGTTACACATG GCAACGGTTTTGGCATTTGTAGTTTTCTAACAATCCAACATCGAGGAGGG TTGTCAAGCAACTTGGAAATCCTTTtgagaacttttgcaaaattaTGATA CCtgtaatatttccttttggTTCGAGGGTCGATTCATATTCATTAGAGAA ATTATAAGTGAAAGTTCTCGTGCCACAAGTCTAGCCTCTTCgtcagaatt ttcaaagaacCTTTTTATCCTTGATTAACATTACTTCGAGTgagtagatt ttattttttagttccAGAGACTACGTAGTGGGCAGAGGGATCAAATAAAG TTGGATATCCAGGTTCGATgattcaaaaaatcaatatcctcaacagtgga agtaaaatctttttctggaaaagccatTATAAATCATTATAAGATTTGTT TATTTATCTTTTAGACGCCCAGGAGAAGAAGAATCTTCCAAGTTTTTGGA TTCCCTCCCTCACACCACAAGCCAGCCAATCAAGAGTAGAGAAGCCAGAC AGTAAAGTGTACTGTCCCATGAGTGGCAAACCTATCAAACTAAAAGACTT AATTTCCGTAAAATTCACTCTGGCGCCTGCTGACGAATCAGATAAGCAGA AATCGATTGTCGCTAGGAAACAGCGTTATATTTGTCCGGTTACTAGGGAC GTTTTAAGTAACACTGTCCGATCGGCGGTGCTGAAACCGTCCGGTAATGT AGTTTCGATGGAATGCGTTGAGAAGTTTATAAAGAAAGACTGGGTTTGTC CGATCACTGGACACAAATTGAAAGAAAAGGATGTCATCGAGCTAAAACGT GGTGGAACAGGTTACTCGTCCGTTGGTAAAGACTCTCTTGAAGGAAAAGC GTATGGGCCAACCATGATGGTCAGCTAGAATCATTTATATTCACCTTGAA AGAATGTTGCATGCGTTGTTATACGTGCGTTGTCCGGAAGAGGAGGTGCT TCGATGGATTAAATATTAACTAACTTCCACACGTTTTACTTACGTAATAT CAGTTGCGTAGCCAACAGGGTGCAAGATTTGTATAAGAGAGAGAGAGTTG GTTGAGCCATTGAGTTCAGAGTCCCGAATGGGATAGAGAGGAAACTCTTG GCTTGGAAATGAAGCTACTTTTTCCCATCCAAACTGCGTAGTTTTCATAC AAACGtcgtattgaaaataaaattcattgcTTTGGTTTTGAAAAATGTAC CACGTGACAATGTGTGGTTTCTCAATACGGcgttttttcttgcttgagaa aggttgaagattcctctctagctctcttgggctttaaactcaatgggctG AACCCTGTTATGACATCTCTTTACTGGCTTATGAAAACATTTGCACTGTT AAAGGACTGAAAACTTTATAACAGCTGAGACTGACCTGAATTTTAGCGAC CCTTTTACCAGATAAAGAATTTTCTTCATTATTGTGAGAATAAATACCTA AAAGTTTGCAAATAATACTCTGAAGCCACTTTATGGTAGTGATTCGAAAC CACAGATTTTAATACTCGCTCACACACACTTTGCgttaaaattcttttct tttcgaacataatttaaaatttcgTATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036252XLOC_036252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057511-exon-scaffold_291-1491911889:114476..114797TCONS_00057511-exon-scaffold_291-1491911889:114476..114797Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1510915933:114476..114797TCONS_00057511-exon-scaffold_291-1510915933:114476..114797Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1575043694:114476..114797TCONS_00057511-exon-scaffold_291-1575043694:114476..114797Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1491911889:118566..118767TCONS_00057511-exon-scaffold_291-1491911889:118566..118767Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1510915933:118566..118767TCONS_00057511-exon-scaffold_291-1510915933:118566..118767Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1575043694:118566..118767TCONS_00057511-exon-scaffold_291-1575043694:118566..118767Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1491911889:119890..121056TCONS_00057511-exon-scaffold_291-1491911889:119890..121056Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1510915933:119890..121056TCONS_00057511-exon-scaffold_291-1510915933:119890..121056Clytia hemisphaericaexon
TCONS_00057511-exon-scaffold_291-1575043694:119890..121056TCONS_00057511-exon-scaffold_291-1575043694:119890..121056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:114476..121056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.686857 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.374698 0.127953 0.316963 0 0 0 0.240809 0.281617 0 0.107849 0 0 0 0.15459 0.0646323 0.132884 0.0721767 0.0881632 0 0 0.374528 0.686857 0 0.147252 0 0 0.396624 0.63601 0.157567 0.404333
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
2004006008001000120014001600Expect = 3.42e-54 / Id = 46.81SequenceNOSIP
Match NameE-valueIdentityDescription
NOSIP3.415e-5446.81Nitric oxide synthase-interacting protein OS=Homo ... [more]
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