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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057521 ID=TCONS_00057521|Name=TCONS_00057521|organism=Clytia hemisphaerica|type=transcript|length=989bp
CTTTTTCAAGACGaaatcttcttcttttcaaACTATCTTAGAATATGTAA
TTGGCGCAGAAAAAaggatatgtttttttttcgagaaagaaaattacaac
attttttattgttaatgCTGGTCGTTGCATCCACAACCACTTCAAAATGC
AGGAAAAAGATTCCAGTGAATGATCATGGTATTCAACCAACCACCATAAT
CAGTGAAGCCAAAGAATTACATGCGAACAATTTACTTCTTTTTATTCCCA
TTCTTTCCACTGAATGGAGTGTACAATTACAGTTTAAACTTCTTTCTGAG
CATGCTGATGGAAGATGGTGTAATATTATGCATGTTACAAAGGGACAGAA
TAGGGATGTTTACGGAGATCGGGTACCAGCCATTTTCTTTGATAAGttcA
ATATGATACTTTCAATACAATCAGCAGTGAATGGCATTATAAGTTATAAT
ATTTTCCATACGATCCAATATAACACAGAATACAATGTGGAAATTCACCA
GAGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTTTCAATGGGG
AAGAAATCCACTCAACCAATAATACACAAGCTCGACAATTTTATGGCGTG
AAAGTTTACATTTCCGATCCTTGGTATAACGCATGCATTGGTTTGGTTAA
AAATGTCAAGATCACTAACTTTCTGTAAATTCATATTTTGACAGACTGAA
GCGCATGTTGTAGTAATTTAAAGGTATatattttggcggggattttaatt
ttggcggattgGTGAAAAACATTTTCCGAAGAAATTTCATTTAGTGCTTG
CTGGATTTAATCGTTTTTCAAGACTTAAAACAGAGTTTGGATGATTGGCT
CTATCAAAAAATTTGTTGAGCGTTTTGAAGattaaacttttgttttgggt
TCCTTGATACTTTTAACCACTGTTACAAGTTGTTTGGTAATTTATCTTTT
CAAGAGTAATTCAGAATTTAGCTACAAAAATAAGGCAGA Run BLAST on NCBI protein sequence of TCONS_00057521-protein >TCONS_00057521-protein ID=TCONS_00057521-protein|Name=TCONS_00057521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
LFQDEIFFFSNYLRICNWRRKKDMFFFRERKLQHFLLLMLVVASTTTSKC
RKKIPVNDHGIQPTTIISEAKELHANNLLLFIPILSTEWSVQLQFKLLSE
HADGRWCNIMHVTKGQNRDVYGDRVPAIFFDKFNMILSIQSAVNGIISYN
IFHTIQYNTEYNVEIHQRYKSGGVYKYSILFNGEEIHSTNNTQARQFYGV
KVYISDPWYNACIGLVKNVKITNFL Run BLAST on NCBI transcript from alignment at scaffold_291:40076..43658- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057521 ID=TCONS_00057521|Name=TCONS_00057521|organism=Clytia hemisphaerica|type=transcript|length=3583bp|location=Sequence derived from alignment at scaffold_291:40076..43658- (Clytia hemisphaerica)
CTTTTTCAAGACGAAATCTTCTTCTTTTCAAACTATCTTAGAATATGTAA
TTGGCGCAGAAAAAAGGATATGTTTTTTTTTCGAGAAAGAAAATTACAAC
ATTTTTTATTGTTAATGCTGGTCGTTGCATCCACAACCACTTCAAAATGC
AGGAAAAAGGTAAGTTACCTTACAGAGTGTGAACAAGGAAGACTCAAAAA
AAATGAAAATCACCCATTGACGAAAGTTTCTTATTTTAATAGTAGAGTCA
ACCAATACCAAACAGTGGAAGTTTATTTTTCTAGTAAAATCTTAGACCAT
AATGAGATAAATTCTTTCGTTTAAAAGCAAAAATGATGTGCAAAGAGTTT
TGAATTTCTTTCAGATTCCAGTGAATGATCATGGTATTCAACCAACCACC
ATAATCAGTGAAGGCATGTATTCCTGTTATTTTAAAAGTCTAAATCTAAA
ATTTTCCGCTTTTATTCGGGAGACACTGTATACTTTAGGAGTACAAACTT
TGGCAAGCAGAAATTTTCGCGATTTTCGCGAATTTTCAGGAAAGTAAATG
TCATTGAAAATTCTTAACAAGGATATTCGCAAAGGTTTATTTTCATTTTT
ATCCTACGATTCACGAAAGTTTAAAGTGTTTTTTTCCTCAAATTTGCAAA
AGTAAAATTTTGTAGATTTCACAATTTTATGATCGCGAAAGTTATTTCTG
CTTGCGAGAGTTTGTGCGATCTCTAATAAGTTTTCAAGAAATTTTTTTTG
ATTTGAAAAGGTTTGTCTACTCCCCTGTAAGAAAATTTAATGGAATTGCC
CAGTAGAAGCCATAACAAGTGACACATTCTATTATCAAATTTTGCCTGAA
TAACACCAGCAGGCACACAACGCTGTTTCGACGTTTATCTAATGTTACCA
ACGTCCATATAACGTTAGTTGAACGTGATGAAACAACGTTGTGTGCCAGC
TGGGACTCTCCTTATTTGAGGGGGTTTATCTAAAGAATCCTGCATTACTA
AAAATAGACAAAAAGAACGACAAATTTCATAAAAGATGACATATTTCGCC
GTTCACAACCCGACCGAAAGTGACTGTACAACCCCTAGCGATTCATTCCC
TTTCGTTTATCACGGGAATTAACTACATGTGGTCTAAAAGAACGACGAAT
TACGCATGCGTGTTACAATGCAGGATCCTTCAGAGGAACAGACTGTTTAC
ATGATACTTTCAATATATCTTTCAGCCAAAGAATTACATGCGAACAATTT
ACTTCTTTTTATTCCCATTCTTTCCACTGAATGGAGTGTACAATTACAGT
TTAAACTTCTTTCTGAGCATGCTGATGGAAGATGGTGTAATATTATGCAT
GTTACAAAGGGACAGAATAGGGATGTTTACGGAGATCGGGTACCAGCCAT
TTTCTTTGATAAGGTAAGCTTTTCATTTAGCATTTTAGTATACTTAAAAA
CTTATACCTTAATATAAATGGAATTCGCACCCTCACTAAAATTAAGTTTC
TTCAGGATTACCTTATTTTCTCTCAAGCTTTAATTTTTAGACAAAAAAGA
ACCCATTCAACCTAATAAGTAGGTCAATGAGATTTTAAGCTCGATTTTTT
GTTAGAAAATTGCAGTTAAAACAAAAGAAAATAGTTAAAGATCAAAGAAA
TTTACCGTTAACTTCGATCGGAATTGATAGCAAGTTGTGAGGCCTAAGTT
TGCTGATACAAATGACAGCTTTCTAAATCATGGTACCATTTTCAACTTTC
TCCCCATTTGCCCAACTCGAAAAAAAAGAAGAAGAAACCGGCAGCATCAC
GGTGGAGCGCATGACGTCAGCTGCGCGGAAATTAACACGCTTGTAATTTG
TTCATTATAGTAGGGCCGTGGGCGGTTTTTTTGACAGGCGCCTTCTAATT
CTCCAATCGCCGTCGGCCATTTTGAAGTAAAACAAAAAAATTAAAAAATA
GCACGCTAAAAGCGAATTTTCATTTGTTATTGTCTCCTGGCCAAACTTAA
TGTTAAATTAAGTGGGTATCAATTCTGCTCGTCAAATTAGTTATCACTTT
AATTAGGTACTTTATTCATAAGATATTCTCTATCCTTATTTACTCTTGAC
AGACTGTATTTTTCATATAACCGTATAAGCTCGAAACCAGATTTATGCCG
GCATTCTTACGCCGTCTTTAGCGCTTTAGATAGCACGATTAAAAGAGCGA
AAAACGTTTAAATTTTAAACAAAGTGAACAAAATAATTTGAAAATGTGAT
TTTTTTGGTGCTTACTCTCAGGTTCCAAATAAATGCCCCTCCCCCGCTTG
TTAATCTTTTGAAAATTTGCCAACCCCCCCCGGACCTTATGAGGACCCCC
CCCCGTTTATTAATTTTTAAGAATGTTTTCAGCTTTCAAAAACAAGGTAC
TTTATTTCTCTTGAAATAGCCTGATTTTAGCATTACCTTATTTTTGAGTT
TTCGTAATTACAATTTCCCCCCCCCCCCCTGGTAATTAGGTCCCTACCCC
AGTCTAAAAAATTTTCCAAGCCCCCCCCCTGTTTATTTGAACCACCTTGT
TTATTTGGAACTTAAGAGTAAGTGCCATCAGTCATTTCTAAAAATTTTAA
GAAAATCGCTCGTTCAAGCTTTAAAGGTTTAAGACTGCGCGGGCCTGACT
GAGTGATGGAAAAATGGAAAAATGCCCATTGGTAAAACTTCAATTCAATT
CCCAAAAAATAGTCAAAATCTCAAAAAAGTGGATATTTGTCAAATTTTTG
CATTTTTTTGACTTTTTTTCAAAAAATCTCGCTAGAAAGACTCAGTTTTA
AATTCTTTTTGCTTGACTATGAAGCACAATCCAATTTCTATGACTTAGAT
AAAACTTTACGATTTCTAATTATCAAACTGGGCATTACAGGAGAGCTTCG
CCCTCCTATATAGCCCATGTGAAATACACTTGACATGTACACGGGAAGGG
TTAAATTTCAAACAAAATATTGTTCTTTTTTCAATTTCAGTTCAATATGA
TACTTTCAATACAATCAGCAGTGAATGGCATTATAAGTTATAATATTTTC
CATACGATCCAATATAACACAGAATACAATGTGGAAATTCACCAGAGATA
CAAAAGTGGAGGTGTTTACAAATATTCCATCCTTTTCAATGGGGAAGAAA
TCCACTCAACCAATAATACACAAGCTCGACAATTTTATGGCGTGAAAGTT
TACATTTCCGATCCTTGGTATAACGCATGCATTGGTTTGGTTAAAAATGT
CAAGATCACTAACTTTCTGTAAATTCATATTTTGACAGACTGAAGCGCAT
GTTGTAGTAATTTAAAGGTATATATTTTGGCGGGGATTTTAATTTTGGCG
GATTGGTGAAAAACATTTTCCGAAGAAATTTCATTTAGTGCTTGCTGGAT
TTAATCGTTTTTCAAGACTTAAAACAGAGTTTGGATGATTGGCTCTATCA
AAAAATTTGTTGAGCGTTTTGAAGATTAAACTTTTGTTTTGGGTTCCTTG
ATACTTTTAACCACTGTTACAAGTTGTTTGGTAATTTATCTTTTCAAGAG
TAATTCAGAATTTAGCTACAAAAATAAGGCAGA Coding sequence (CDS) from alignment at scaffold_291:40076..43658- >TCONS_00057521 ID=TCONS_00057521|Name=TCONS_00057521|organism=Clytia hemisphaerica|type=CDS|length=2712bp|location=Sequence derived from alignment at scaffold_291:40076..43658- (Clytia hemisphaerica)
TTCAATATGATACTTTCAATACAATCAGCAGTGAATGGCATTATAAGTTA
TAATATTTTCCATACGATCCAATATAACACAGAATACAATGTGGAAATTC
ACCAGAGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTTTCAAT
GGGGAAGAAATCCACTCAACCAATAATACACAAGCTCGACAATTTTATGG
CGTGAAAGTTTACATTTCCGATCCTTGGTATAACGCATGCATTGGTTTGG
TTAAAAATGTCAAGATCACTAACTTTCTGTAACCAAAGAATTACATGCGA
ACAATTTACTTCTTTTTATTCCCATTCTTTCCACTGAATGGAGTGTACAA
TTACAGTTTAAACTTCTTTCTGAGCATGCTGATGGAAGATGGTGTAATAT
TATGCATGTTACAAAGGGACAGAATAGGGATGTTTACGGAGATCGGGTAC
CAGCCATTTTCTTTGATAAGATTCCAGTGAATGATCATGGTATTCAACCA
ACCACCATAATCAGTGAAGCTTTTTCAAGACGAAATCTTCTTCTTTTCAA
ACTATCTTAGAATATGTAATTGGCGCAGAAAAAAGGATATGTTTTTTTTT
CGAGAAAGAAAATTACAACATTTTTTATTGTTAATGCTGGTCGTTGCATC
CACAACCACTTCAAAATGCAGGAAAAAGTTCAATATGATACTTTCAATAC
AATCAGCAGTGAATGGCATTATAAGTTATAATATTTTCCATACGATCCAA
TATAACACAGAATACAATGTGGAAATTCACCAGAGATACAAAAGTGGAGG
TGTTTACAAATATTCCATCCTTTTCAATGGGGAAGAAATCCACTCAACCA
ATAATACACAAGCTCGACAATTTTATGGCGTGAAAGTTTACATTTCCGAT
CCTTGGTATAACGCATGCATTGGTTTGGTTAAAAATGTCAAGATCACTAA
CTTTCTGTAACCAAAGAATTACATGCGAACAATTTACTTCTTTTTATTCC
CATTCTTTCCACTGAATGGAGTGTACAATTACAGTTTAAACTTCTTTCTG
AGCATGCTGATGGAAGATGGTGTAATATTATGCATGTTACAAAGGGACAG
AATAGGGATGTTTACGGAGATCGGGTACCAGCCATTTTCTTTGATAAGAT
TCCAGTGAATGATCATGGTATTCAACCAACCACCATAATCAGTGAAGCTT
TTTCAAGACGAAATCTTCTTCTTTTCAAACTATCTTAGAATATGTAATTG
GCGCAGAAAAAAGGATATGTTTTTTTTTCGAGAAAGAAAATTACAACATT
TTTTATTGTTAATGCTGGTCGTTGCATCCACAACCACTTCAAAATGCAGG
AAAAAGTTCAATATGATACTTTCAATACAATCAGCAGTGAATGGCATTAT
AAGTTATAATATTTTCCATACGATCCAATATAACACAGAATACAATGTGG
AAATTCACCAGAGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTT
TTCAATGGGGAAGAAATCCACTCAACCAATAATACACAAGCTCGACAATT
TTATGGCGTGAAAGTTTACATTTCCGATCCTTGGTATAACGCATGCATTG
GTTTGGTTAAAAATGTCAAGATCACTAACTTTCTGTAACCAAAGAATTAC
ATGCGAACAATTTACTTCTTTTTATTCCCATTCTTTCCACTGAATGGAGT
GTACAATTACAGTTTAAACTTCTTTCTGAGCATGCTGATGGAAGATGGTG
TAATATTATGCATGTTACAAAGGGACAGAATAGGGATGTTTACGGAGATC
GGGTACCAGCCATTTTCTTTGATAAGATTCCAGTGAATGATCATGGTATT
CAACCAACCACCATAATCAGTGAAGCTTTTTCAAGACGAAATCTTCTTCT
TTTCAAACTATCTTAGAATATGTAATTGGCGCAGAAAAAAGGATATGTTT
TTTTTTCGAGAAAGAAAATTACAACATTTTTTATTGTTAATGCTGGTCGT
TGCATCCACAACCACTTCAAAATGCAGGAAAAAGTTCAATATGATACTTT
CAATACAATCAGCAGTGAATGGCATTATAAGTTATAATATTTTCCATACG
ATCCAATATAACACAGAATACAATGTGGAAATTCACCAGAGATACAAAAG
TGGAGGTGTTTACAAATATTCCATCCTTTTCAATGGGGAAGAAATCCACT
CAACCAATAATACACAAGCTCGACAATTTTATGGCGTGAAAGTTTACATT
TCCGATCCTTGGTATAACGCATGCATTGGTTTGGTTAAAAATGTCAAGAT
CACTAACTTTCTGTAACCAAAGAATTACATGCGAACAATTTACTTCTTTT
TATTCCCATTCTTTCCACTGAATGGAGTGTACAATTACAGTTTAAACTTC
TTTCTGAGCATGCTGATGGAAGATGGTGTAATATTATGCATGTTACAAAG
GGACAGAATAGGGATGTTTACGGAGATCGGGTACCAGCCATTTTCTTTGA
TAAGATTCCAGTGAATGATCATGGTATTCAACCAACCACCATAATCAGTG
AAGCTTTTTCAAGACGAAATCTTCTTCTTTTCAAACTATCTTAGAATATG
TAATTGGCGCAGAAAAAAGGATATGTTTTTTTTTCGAGAAAGAAAATTAC
AACATTTTTTATTGTTAATGCTGGTCGTTGCATCCACAACCACTTCAAAA
TGCAGGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057521-exon-scaffold_291-1575043694:43500..43658 | TCONS_00057521-exon-scaffold_291-1575043694:43500..43658 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1575043694:43246..43294 | TCONS_00057521-exon-scaffold_291-1575043694:43246..43294 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1575043694:42246..42433 | TCONS_00057521-exon-scaffold_291-1575043694:42246..42433 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1575043694:40076..40668 | TCONS_00057521-exon-scaffold_291-1575043694:40076..40668 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1510915933:43500..43658 | TCONS_00057521-exon-scaffold_291-1510915933:43500..43658 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1510915933:43246..43294 | TCONS_00057521-exon-scaffold_291-1510915933:43246..43294 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1510915933:42246..42433 | TCONS_00057521-exon-scaffold_291-1510915933:42246..42433 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1510915933:40076..40668 | TCONS_00057521-exon-scaffold_291-1510915933:40076..40668 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1491911889:43500..43658 | TCONS_00057521-exon-scaffold_291-1491911889:43500..43658 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1491911889:43246..43294 | TCONS_00057521-exon-scaffold_291-1491911889:43246..43294 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1491911889:42246..42433 | TCONS_00057521-exon-scaffold_291-1491911889:42246..42433 | Clytia hemisphaerica | exon |
| TCONS_00057521-exon-scaffold_291-1491911889:40076..40668 | TCONS_00057521-exon-scaffold_291-1491911889:40076..40668 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:40076..43658 - |
Blast
The following BLAST results are available for this feature:
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