TCONS_00057524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057524
Unique NameTCONS_00057524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057524 ID=TCONS_00057524|Name=TCONS_00057524|organism=Clytia hemisphaerica|type=transcript|length=585bp
tttgatcAACAAACCATCAAAATGTTGATCGATGGAAGAAACAAATGGAA
CAGCACACCATTGCATGTTGCAGCATGTCTCaacaatcatgacgtcatca
gatggtTGTTGGCCAAAGGAGCGAATCCAGAATTGAAAAATGATGATGGT
CGACGCCCTGATGAATATGAAAGGTGTGATGGTGTTACCAAAGAAATCTT
TCGATCGTTTCGTTCGTCTtgaTCGAtgttttgatggtttttttcacaca
aacatTTCCTTTCCTTCGAACATTTCCACAAATCGCTTCTCTTGACCAAC
TCGAAAAGgtCTATCGTTTCAATCCGTAATCATTTCACGTCCCTCGCCGC
CAGCGATGCTCGCATTTCGTACACGACGTCCTTCTTGTTTCTCGTACACG
GCGTTATTCGATTTTCGTGGACGACGTTCTTCCTTGTCGTTTGAAACGAT
ACGTACTTCGCAGACACTGTCGTTATTTCTCTTCGTTACTCGTTACCCTT
GGATCCTTTTCAACAGCAACAGTTTAACTTGCTTGTCCAATTGATTGGAG
TAAAGACCAGTTTGGAGTTTCATTTAATGTAATGG
Run BLAST on NCBI

transcript from alignment at scaffold_291:73169..74731-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057524 ID=TCONS_00057524|Name=TCONS_00057524|organism=Clytia hemisphaerica|type=transcript|length=1563bp|location=Sequence derived from alignment at scaffold_291:73169..74731- (Clytia hemisphaerica)
TTTGATCAACAAACCATCAAAATGTTGATCGATGGAAGAAACAAATGGAA
CAGCACACCATTGCATGTTGCAGCATGTCTCAACAATCATGACGTCATCA
GATGGTTGTTGGCCAAAGGAGCGAATCCAGAATTGAAAAATGATGATGGT
CGACGCCCTGATGAATATGAAAGGTGTGATGGTGTTACCAAAGAAATCTT
TCGATCGTTTCGTTCGTCTTGGTAAGAAAAATATCAACTTTTTCATGATT
AATTTTAGGAAAGGAACGTTTTTTCGGATAGGATTGATAAAACGCAATTT
TTTTATTTGAATTGATTTTTTTATACGAATAACATCCTTTATAAGAACAA
CACAATTGTAAGAAATCCTATTTCTTTGTCAGGCAAATTAAGAACAGCAT
ACAACTAAAATTTAGTTGTTCTTACAAAGTTTCTCCGACACTAATAAGGA
TGTAATATGCGTTTTCAATTAATTTTATTTTACATTCGAAATAGAAATTA
TTTGAAATCAATTACAATAGACAAAAATGGGTTTAGCGTACTGTAATATA
ATAATAATTTTTGGAGAAAGGGAAAAAACTCGATAACCCGGATTTATCTG
GTCGCTGGTCGTGGTCGTCATTTATGGTCGACGTTTAGAAATTCCCGTGA
AAAATGTTTTCTTATAAAGTAACTGGTTGATAATGTGATCACAAATTGTT
TTTTTACAGATCGATGTTTTGATGGTTTTTTTCACACAAACATTTCCTTT
CCTTCGAACATTTCCACAAATCGCTTCTCTTGACCAACTCGAAAAGGTAA
ATAAATTCGGTTATCATTTTTCAAGACAACCCCGGTATCACTCCCCATCC
TGGAAACTTTGGCTGAAAAATTGTCTCATTGAGAGTTATCGAGAAAAATA
TCCCTACTGGAAAAGTCGACTAAAATCATTCCTCCTTGGGAAGATATTTT
TACTTCAAGCATTATTTCAAGCGATATTTTAGATTTATTCCATCACCACT
GTCACGGAGACATGAGTGTTCCGAAAATTCCGGAAGATATAGTGTTTACG
AAATGGAAAGTTTTTCTAAAATTTTCGATTAGATTTTAAAATTAATTAAA
TAGTTTCAAAGGTCATATTTCAGCTATCTATGATTTCGTAATGACCTTCG
ATTGATTTGATATTATTGACAGTTCTTAACTAAAATCGGGGTGAATGGTT
CGAATTTTAATCACGTTTTACTGATAACAATATTATTTGGTGAAAAGAAA
TTCTTAAATTTACTTATCTTATGTTTTTGTTTTCAGGTCTATCGTTTCAA
TCCGTAATCATTTCACGTCCCTCGCCGCCAGCGATGCTCGCATTTCGTAC
ACGACGTCCTTCTTGTTTCTCGTACACGGCGTTATTCGATTTTCGTGGAC
GACGTTCTTCCTTGTCGTTTGAAACGATACGTACTTCGCAGACACTGTCG
TTATTTCTCTTCGTTACTCGTTACCCTTGGATCCTTTTCAACAGCAACAG
TTTAACTTGCTTGTCCAATTGATTGGAGTAAAGACCAGTTTGGAGTTTCA
TTTAATGTAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036262XLOC_036262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057524-exon-scaffold_291-1575043694:74511..74731TCONS_00057524-exon-scaffold_291-1575043694:74511..74731Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1575043694:73936..74022TCONS_00057524-exon-scaffold_291-1575043694:73936..74022Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1575043694:73169..73445TCONS_00057524-exon-scaffold_291-1575043694:73169..73445Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1510915933:74511..74731TCONS_00057524-exon-scaffold_291-1510915933:74511..74731Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1510915933:73936..74022TCONS_00057524-exon-scaffold_291-1510915933:73936..74022Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1510915933:73169..73445TCONS_00057524-exon-scaffold_291-1510915933:73169..73445Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1491911889:74511..74731TCONS_00057524-exon-scaffold_291-1491911889:74511..74731Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1491911889:73936..74022TCONS_00057524-exon-scaffold_291-1491911889:73936..74022Clytia hemisphaericaexon
TCONS_00057524-exon-scaffold_291-1491911889:73169..73445TCONS_00057524-exon-scaffold_291-1491911889:73169..73445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:73169..74731 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02635	1.8181	0.500443	0.522604	3.4593	2.78385	2.20702	4.00429	1.77923	2.98332	6.18437	2.41779	19.923	17.3565	1.31524	1.72425	8.79933	11.1337	25.1369	18.837	13.0489	12.3293	8.7448	9.82404	3.35613	4.47305	24.3106	18.8679	3.80874	2.99456
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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