TCONS_00057532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057532
Unique NameTCONS_00057532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057532 ID=TCONS_00057532|Name=TCONS_00057532|organism=Clytia hemisphaerica|type=transcript|length=391bp
TTACAGCAAACATATTTCTCAATTCTGTATCACGAACTTTAAACGGTAAA
TTAGTCACATGGAGTCGCTTCGGCCCATCATTGATCGTGGCCGTACTCAC
TGGTGCCGTGGCCGTCAAACTTAATTCTGATTGTGATAGTAAAGGGGATA
TTTTATGGTCACTGGTACTGGCCGTAGTGGCGGCGTTAAGGGACTCTTGT
GCGTCAAGAGCAGGGGTTGCAATAATTGTTGTAACATCTTCAGGCTTTAG
TAAAGTTTTTCGTGTGTTTGTTGTTGCAAGTGCATCTGTTGTTTGTGTGt
tctcttttaatttcttttgttgaacaGCAGCCTGCGAACGAAAGAAAGAG
TGAAGGAAATGCTTCCATCTTGTTAGAAAGTAGAccgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00057532-protein

>TCONS_00057532-protein ID=TCONS_00057532-protein|Name=TCONS_00057532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
FSVYFLTRWKHFLHSFFRSQAAVQQKKLKENTQTTDALATTNTRKTLLKP
EDVTTIIATPALDAQESLNAATTASTSDHKISPLLSQSELSLTATAPVST
ATINDGPKRLHVTNLPFKVRDTELRNMFAV
Run BLAST on NCBI

transcript from alignment at scaffold_291:66494..66884

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057532 ID=TCONS_00057532|Name=TCONS_00057532|organism=Clytia hemisphaerica|type=transcript|length=391bp|location=Sequence derived from alignment at scaffold_291:66494..66884 (Clytia hemisphaerica)
ttttcggTCTACTTTCTAACAAGATGGAAGCATTTCCTTCACTCTTTCTT
TCGTTCGCAGGCTGCtgttcaacaaaagaaattaaaagagaaCACACAAA
CAACAGATGCACTTGCAACAACAAACACACGAAAAACTTTACTAAAGCCT
GAAGATGTTACAACAATTATTGCAACCCCTGCTCTTGACGCACAAGAGTC
CCTTAACGCCGCCACTACGGCCAGTACCAGTGACCATAAAATATCCCCTT
TACTATCACAATCAGAATTAAGTTTGACGGCCACGGCACCAGTGAGTACG
GCCACGATCAATGATGGGCCGAAGCGACTCCATGTGACTAATTTACCGTT
TAAAGTTCGTGATACAGAATTGAGAAATATGTTTGCTGTAA

Coding sequence (CDS) from alignment at scaffold_291:66494..66884

>TCONS_00057532 ID=TCONS_00057532|Name=TCONS_00057532|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_291:66494..66884 (Clytia hemisphaerica)
ttttcggTCTACTTTCTAACAAGATGGAAGCATTTCCTTCACTCTTTCTT
TCGTTCGCAGGCTGCtgttcaacaaaagaaattaaaagagaaCACACAAA
CAACAGATGCACTTGCAACAACAAACACACGAAAAACTTTACTAAAGCCT
GAAGATGTTACAACAATTATTGCAACCCCTGCTCTTGACGCACAAGAGTC
CCTTAACGCCGCCACTACGGCCAGTACCAGTGACCATAAAATATCCCCTT
TACTATCACAATCAGAATTAAGTTTGACGGCCACGGCACCAGTGAGTACG
GCCACGATCAATGATGGGCCGAAGCGACTCCATGTGACTAATTTACCGTT
TAAAGTTCGTGATACAGAATTGAGAAATATGTTTGCTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036269XLOC_036269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057532-exon-scaffold_291-1491911889:66494..66884TCONS_00057532-exon-scaffold_291-1491911889:66494..66884Clytia hemisphaericaexon
TCONS_00057532-exon-scaffold_291-1510915933:66494..66884TCONS_00057532-exon-scaffold_291-1510915933:66494..66884Clytia hemisphaericaexon
TCONS_00057532-exon-scaffold_291-1575043694:66494..66884TCONS_00057532-exon-scaffold_291-1575043694:66494..66884Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057532-proteinTCONS_00057532-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:66494..66884 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.31386	3.8018	6.84209	5.18239	1.84014	0.623188	1.75432	1.64237	4.59945	5.08675	4.14735	2.85613	6.39778	5.76277	3.43137	3.59598	5.70707	4.64965	8.96789	10.4082	6.86773	5.24001	7.3757	8.12797	1.67432	2.84796	2.67291	1.71156	5.84172	2.4248
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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