TCONS_00057547 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057547
Unique NameTCONS_00057547
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057547 ID=TCONS_00057547|Name=TCONS_00057547|organism=Clytia hemisphaerica|type=transcript|length=572bp
TTAGAAAACTCAATGACATCAGACAATGCCCTGGTTCAACTTGGcatcaa
agaattgaaaaatattctttttgaaCATAGCCCCCAAGAAAGGATCAAAG
TATGGCAACTAATAAATAGCTATCTTTCTCGTTGTGTCACACCACCACTA
CAAAACCTTGAAATACAAGAAGATAGAATTGATACTTCTCCTGACAACCA
ACACCACCATCACCAGAACCAATCTGGTTCTGCAAACAGCTTTATGCAGA
AACAATTCAATACAAGCCTGAGGAAACAGCCAGATAAAATTGACATCTCT
CCTGACCACCACCACAACCACAGCCAATCTGGTTCTACAAAAAGCTTTTT
ACCTACGCAATTTAAAAAGAGCCTGGAAAAACAAGATGACAAAATTGACA
CCTCTCCTGAACACCACCGCCACAACCGATCTAGTTCTGCAAGCTTTAAG
CAATTCAAAAGCCTGGAAAAACGAGAGGATAAAGTTGTCATCTCTCCAGA
CAACCATCGCCAATCTGTTCCAGCAATTTTAGCTGAAGAAGACAGAGCTG
ATTGTGCAAAGAAAGTAAAACG
Run BLAST on NCBI

protein sequence of TCONS_00057547-protein

>TCONS_00057547-protein ID=TCONS_00057547-protein|Name=TCONS_00057547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
LENSMTSDNALVQLGIKELKNILFEHSPQERIKVWQLINSYLSRCVTPPL
QNLEIQEDRIDTSPDNQHHHHQNQSGSANSFMQKQFNTSLRKQPDKIDIS
PDHHHNHSQSGSTKSFLPTQFKKSLEKQDDKIDTSPEHHRHNRSSSASFK
QFKSLEKREDKVVISPDNHRQSVPAILAEEDRADCAKKVK
Run BLAST on NCBI

transcript from alignment at scaffold_292:139188..142876-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057547 ID=TCONS_00057547|Name=TCONS_00057547|organism=Clytia hemisphaerica|type=transcript|length=3689bp|location=Sequence derived from alignment at scaffold_292:139188..142876- (Clytia hemisphaerica)
TTAGAAAACTCAATGACATCAGACAATGCCCTGGTTCAACTTGGCATCAA
AGAATTGAAAAATATTCTTTTTGAACATAGCCCCCAAGAAAGGATCAAAG
TATGGCAACTAATAAATGTGAGTTGAGCTTTTCATGTTGGTATTGAAGTA
TTTTTTAGATCGGTCTGTTTAGAGATCTATTACAGGCTGCATCATTTGAA
AATTTCAGGCGTGTGGTCAATCACACTCTTAAAATCCTAATTTTAGTAAT
TTAGGCGTGTGATAAAGAGTGCTATGCACAACTTTCAGTTGTGAAACTTA
CTTTATGGGGTGTGATTGATTGCACGCCTCAAATGATGCAGCCTGCTATT
AATTGGATATGCTATTTTGTGAAAATAGGAAAAATTGGCAAAAATTTCCA
ACATTTGTTGTCTTTTTGCTTTATTTTGAATACGATTCTAATCTACCTAA
TGGTAGAAATTTTGGCAGGAATTTAATTTGGTGGATGGCCCCCAAAAAAA
TTTCACAGGGAATTTAATTTGGCGAATCGTCAAATAAATTAATTTTGTTT
GGCGATGGCTTCAAGGTTCAAAATCAACCCTTTTATGACCTACCGTGAGA
TTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCATATCAAT
GACCTGGTTGGTCATTAAAATACAAAGTTAAATCAAATCAAACCTGAGTA
CAAAATTTCCGAAAGTGATGTCAGGCATAATTATGTTAAGATTTGAGATT
ACACGTCCAGCCAGCCATCAAGAAACATCAAAACTCCCGCCATCTTAAAA
TTATGATCTCACATGATTTTTATTACGCAACCACGCTGGTTTATATACCC
GTGATTCACTGGTTGGCGAGTAACTTGCTGAAATTAACTCGCCCGGCAAA
TTTGAGATTCTAAAATTAATGGTAGACTAAAGCTGCAGTGCTTTACAGTT
CTTACATTTTGTTTTACATTTTGCTGCTTTGGTTGGTCAGGTGCTTGATG
GCTATGCAAGTTTCCTTCCATTGATGCAAGTTACCCGATCTCACGGTAAA
TAGTGAAAATAACATTTGAGAAAACTTGAATTTGGTGGGAATTCAATTTG
ACTGATGGTGAAAAAAGAATTTTGGCGGGAACTTGATTTAGCCAAAATCC
CCCAAATTTTCTTTCAGACTAAAATTCTTCCAATAAGGTAGACAATAATT
GAATCAACCAGAAACTTGAATGTTGAATCTTTTTTACACTTCAGAGCTAT
CTTTCTCGTTGTGTCACACCACCACTACAAAACCTTGAAATACAAGAAGA
TAGAATTGATACTTCTCCTGACAACCAACACCACCATCACCAGAACCAAT
CTGGTTCTGCAAACAGCTTTATGCAGAAACAATTCAATACAAGCCTGAGG
AAACAGCCAGATAAAATTGACATCTCTCCTGACCACCACCACAACCACAG
CCAATCTGGTTCTACAAAAAGCTTTTTACCTACGCAATTTAAAAAGAGCC
TGGAAAAACAAGATGACAAAATTGACACCTCTCCTGAACACCACCGCCAC
AACCGATCTAGTTCTGCAAGCTTTAAGCAATTCAAAAGCCTGGAAAAACG
AGAGGATAAAGTTGTCATCTCTCCAGACAACCATCGCCAATCTGTTCCAG
CAATTTTAGGTAACNCTGCAAGCTTTAAGCAACTCAAAAGCCTGGAAAAA
CGAGAGGATAAAGTTGTCATCTCTCCAGACAACCATCGCCGATCTGTTCC
AGCAATTTTAGGTAACAAACTTAAAACTTGGAAAAGCCGCTGTAAACAGG
AGCATGAGATTGATACTTCGTCTAACAACCACCAACCTAGTATTAACCTA
GCAGCACCATCATATACAGTATACATTGACGCAGAAGCCAAAAACACCGA
CAGGGCTGGAGGTCTAACTAAGCGACTCAAAGAAAGAGTTATAAGATCAC
AAATAGACAGTATGAACACAATAGCATCAATGGAACCATTCAGTAGAAAA
CCAACAAAAAAAGACCCCCCCAGCAGAGCTCTTATGAGAAGGGGCACCAA
AAATGATTTTCAGGTGCTCCCNAATAGAAGAAATGGCAAAATCTTTGCAA
TTACATTATCCATCCTTAGTGAAAAAAGAAAGAGGACATTCTCTGGTATG
TAGAATTTTTAAAAACCTTAATGTTATGACCACCTCCTATTTACTTATCT
GTGCTTAATTGTAAGCAGTGGCGTGGTTGCAGGGGGGGCCAGGGGGCAGG
CCCCCCAGCAGAGCTCTTATGAGAAGGGGCACCAAAAATGATTTTTAGGT
GCTCCCTATCAAAAGACTGACATTTGAAAAACCAACAAATGGTGCCCCTT
ATTAGTACCTAAAACTTTCGCTCACTCGCTCCTTTGTTTTCCTAGGGTTT
TTTGGGAAAATCACTTGATAATGACCCCCCCCCCCAATTTATGCCTTTTC
TTCCGGAGTACCCTGCTTATTCCATCTACACCCCTACAGAGTATTATTAA
AGCAAATTTTATGAATTTATTATTTTGTATGCCAGTTTTTGCTGAAAACT
TTAACACAACCATCCAACCCTTTTTTTCAGGAAGATCTACAAAGAGTGAT
AAACAAGTGCCAATATAACAGAAACAGGATGTANAACCATCCAACCCTTT
TTTTCAGGAAGATCTACAAAGAGTGATGATCAAGTGCCAATATAACAGAA
ACAGGATGTATAAAGAACTAGTTGATGCCAATGAAAAACAATTTCTAATG
GATGATAGTGATAGTAAGTGATATAGTACTCTTTTGTGCTTAATTGTAGG
GGGTATCAAATTGCTATTTTTTCGACCCCTGCATCACTTAACAATGACCC
CACACCACCCCCATTTTACAAATTTTATGCTACAGAGTATGATAAAATTA
ACAAAAATACTTAATTTTCTTTGGGTTTTTCAGCAAAATCAGGCCAATAA
CACTTTTTTATGATCCCCCATTTAATTGATTTCACCAGGAGTAGCCATGC
CCCTCCCCCACTGTTTTTACCATTATTGTTCACAAGTCAAAAAGGGTAGT
GTAGAACAATTCTGAATAATTTTTCTTTATTGTCATAGTTGAAGAAGAAA
GACCTGGCAATGCAAAGAAAATACAATTTATTCCATCATCTGGTAAGAGC
TCTGAAGTTTAAGCAAGTAATTTTTGGACTTTCCAGGAGATCCTATGAAA
TGAATTGATTCTATTTGTTCATCCACCTGTTTAGGCTGGGCTTAAAAAAT
TGTTGGTTTGCCGTCACCCGACCCTAGATTTTGGAGGTGGGTCGGTTGGT
CGGAATTTTTTTTATTTTGGCGATTGATGAAATTTTCGTCCATGGAAGGG
TTAACAGTTTGTTTGCATTTAGGTAATTTTGAATAAAAAACAGAAGTGCT
AGCAGGGAATTTACGATTCATATGCTTGAGACAAACAAGATGCAAATTTT
GATTTTTATTTGTTTGAAGTTTTTGAAGGAAAAAAAATTTTCTTTAAAAT
GGCAATAAAATTTTTTTGGGTCGGCAGGTTTCGAGGTAGAGTCGGTCGGG
TGACGGCAAACCAACAATTTTTTAAATCCAGCCTCATCTGTTTCCATCGT
TTCTCTGAATTGGATCATTTAGTAAATAGTTTTCTCTCTATTATCATAGC
TGAAGAAGACAGAGCTGATTGTGCAAAGAAAGTAAAACG

Coding sequence (CDS) from alignment at scaffold_292:139188..142876-

>TCONS_00057547 ID=TCONS_00057547|Name=TCONS_00057547|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_292:139188..142876- (Clytia hemisphaerica)
CTGAAGAAGACAGAGCTGATTGTGCAAAGAAAGTAAAAAGCTATCTTTCT
CGTTGTGTCACACCACCACTACAAAACCTTGAAATACAAGAAGATAGAAT
TGATACTTCTCCTGACAACCAACACCACCATCACCAGAACCAATCTGGTT
CTGCAAACAGCTTTATGCAGAAACAATTCAATACAAGCCTGAGGAAACAG
CCAGATAAAATTGACATCTCTCCTGACCACCACCACAACCACAGCCAATC
TGGTTCTACAAAAAGCTTTTTACCTACGCAATTTAAAAAGAGCCTGGAAA
AACAAGATGACAAAATTGACACCTCTCCTGAACACCACCGCCACAACCGA
TCTAGTTCTGCAAGCTTTAAGCAATTCAAAAGCCTGGAAAAACGAGAGGA
TAAAGTTGTCATCTCTCCAGACAACCATCGCCAATCTGTTCCAGCAATTT
TAGTTAGAAAACTCAATGACATCAGACAATGCCCTGGTTCAACTTGGCAT
CAAAGAATTGAAAAATATTCTTTTTGAACATAGCCCCCAAGAAAGGATCA
AAGTATGGCAACTAATAAATCTGAAGAAGACAGAGCTGATTGTGCAAAGA
AAGTAAAAAGCTATCTTTCTCGTTGTGTCACACCACCACTACAAAACCTT
GAAATACAAGAAGATAGAATTGATACTTCTCCTGACAACCAACACCACCA
TCACCAGAACCAATCTGGTTCTGCAAACAGCTTTATGCAGAAACAATTCA
ATACAAGCCTGAGGAAACAGCCAGATAAAATTGACATCTCTCCTGACCAC
CACCACAACCACAGCCAATCTGGTTCTACAAAAAGCTTTTTACCTACGCA
ATTTAAAAAGAGCCTGGAAAAACAAGATGACAAAATTGACACCTCTCCTG
AACACCACCGCCACAACCGATCTAGTTCTGCAAGCTTTAAGCAATTCAAA
AGCCTGGAAAAACGAGAGGATAAAGTTGTCATCTCTCCAGACAACCATCG
CCAATCTGTTCCAGCAATTTTAGTTAGAAAACTCAATGACATCAGACAAT
GCCCTGGTTCAACTTGGCATCAAAGAATTGAAAAATATTCTTTTTGAACA
TAGCCCCCAAGAAAGGATCAAAGTATGGCAACTAATAAATCTGAAGAAGA
CAGAGCTGATTGTGCAAAGAAAGTAAAAAGCTATCTTTCTCGTTGTGTCA
CACCACCACTACAAAACCTTGAAATACAAGAAGATAGAATTGATACTTCT
CCTGACAACCAACACCACCATCACCAGAACCAATCTGGTTCTGCAAACAG
CTTTATGCAGAAACAATTCAATACAAGCCTGAGGAAACAGCCAGATAAAA
TTGACATCTCTCCTGACCACCACCACAACCACAGCCAATCTGGTTCTACA
AAAAGCTTTTTACCTACGCAATTTAAAAAGAGCCTGGAAAAACAAGATGA
CAAAATTGACACCTCTCCTGAACACCACCGCCACAACCGATCTAGTTCTG
CAAGCTTTAAGCAATTCAAAAGCCTGGAAAAACGAGAGGATAAAGTTGTC
ATCTCTCCAGACAACCATCGCCAATCTGTTCCAGCAATTTTAGTTAGAAA
ACTCAATGACATCAGACAATGCCCTGGTTCAACTTGGCATCAAAGAATTG
AAAAATATTCTTTTTGAACATAGCCCCCAAGAAAGGATCAAAGTATGGCA
ACTAATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036284XLOC_036284Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057547-proteinTCONS_00057547-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057547-exon-scaffold_292-1575043694:142760..142876TCONS_00057547-exon-scaffold_292-1575043694:142760..142876Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1575043694:141218..141632TCONS_00057547-exon-scaffold_292-1575043694:141218..141632Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1575043694:139188..139227TCONS_00057547-exon-scaffold_292-1575043694:139188..139227Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1510915933:142760..142876TCONS_00057547-exon-scaffold_292-1510915933:142760..142876Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1510915933:141218..141632TCONS_00057547-exon-scaffold_292-1510915933:141218..141632Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1510915933:139188..139227TCONS_00057547-exon-scaffold_292-1510915933:139188..139227Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1491911889:142760..142876TCONS_00057547-exon-scaffold_292-1491911889:142760..142876Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1491911889:141218..141632TCONS_00057547-exon-scaffold_292-1491911889:141218..141632Clytia hemisphaericaexon
TCONS_00057547-exon-scaffold_292-1491911889:139188..139227TCONS_00057547-exon-scaffold_292-1491911889:139188..139227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:139188..142876 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.131801	0.104151	0.879575	1.17635	1.64719	0.408061	2.07939	1.30182	0.715004	0.540028	0.332982	0.178671	0.586953	0.676809	0.311683	0.326154	0.283487	0.5531	0	0.10188	0	0.187301	0.670069	0.715116	2.06108	1.9894
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057547 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top