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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057559 ID=TCONS_00057559|Name=TCONS_00057559|organism=Clytia hemisphaerica|type=transcript|length=943bp
gtcgtatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattggaaa
catcgtaatttcgattcccctaccccttagctttccaaaaatgtataaca
agNTGAATGTACAAGTAAATAAAAGTGTTGGTAGTAGGTATCTGTAAAAT
ATCCTTTCATTACCGGGACAAAATAGTAGAGTAAAAAACTTCTAAATTCA
GAAGCTTTCCAATAGCTCAAAGTGCTTTTCACAGATCGGGGTGCTCGAGA
GATATGATTTGGTGGTTTGATTGCAAGAAGCCTATTCTCTACATTTTCTA
CATTGGAGTGGATGGAAAAAGGTTCTTTCTTGTGGGACTTGTCGAGCCAA
AGATTCAAACAGAGTTTCATCACTCCAAGTAGGACTCCGTGCATATAATC
CACTGCAACTCCTTTGACAATATTGCTGGCATAATGATGGCAATAGTAAA
AGCGCTGACGGTCCTTTAATGCCACAAATTGGTTCCTTCTTGGTAGAttc
taaaacattttttgcgtGCTGTACAGTCTCTATGTGTGTTCTAGATGGTC
CTTCAggattttcaggcttaaaaggAAAACTACGAACATTACCTCCAGAT
TCCGTCATCACTGTTTCTCCTCTTTGGGTGCACTTAGGACAACCATAAAA
TGCATTAAACTGGCACATATTTAGAACGCTTGCTTTTGCAGGCATATCAC
ACGTTCCACAGAGAATCATTCCTTTCAGCGTAACtttatcatttattttt
atACCATTTTCTCTAATGCCATTCATAGTTTCGAGTTGAGGAGGCAAAAA
AAGCAACATGTTGGGATGGCTTTCACCAAACCATAGTCCATTGATCAATA
CATTTTCTTATTTCACACGTTCCTTGAAAGGTAATTCATTAATCGAATAG
AGAAGTGGCCATAATGAAGACTTTGAAGACTTGAAGACAGGAA Run BLAST on NCBI protein sequence of TCONS_00057559-protein >TCONS_00057559-protein ID=TCONS_00057559-protein|Name=TCONS_00057559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MLLFLPPQLETMNGIRENGIKINDKVTLKGMILCGTCDMPAKASVLNMCQ
FNAFYGCPKCTQRGETVMTESGGNVRSFPFKPENPEGPSRTHIETVQHAK
NVLESTKKEPICGIKGPSALLLLPSLCQQYCQRSCSGLYARSPTWSDETL
FESLARQVPQERTFFHPLQCRKCRE Run BLAST on NCBI transcript from alignment at scaffold_292:130494..131436 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057559 ID=TCONS_00057559|Name=TCONS_00057559|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at scaffold_292:130494..131436 (Clytia hemisphaerica)
TTCCTGTCTTCAAGTCTTCAAAGTCTTCATTATGGCCACTTCTCTATTCG
ATTAATGAATTACCTTTCAAGGAACGTGTGAAATAAGAAAATGTATTGAT
CAATGGACTATGGTTTGGTGAAAGCCATCCCAACATGTTGCTTTTTTTGC
CTCCTCAACTCGAAACTATGAATGGCATTAGAGAAAATGGTataaaaata
aatgataaaGTTACGCTGAAAGGAATGATTCTCTGTGGAACGTGTGATAT
GCCTGCAAAAGCAAGCGTTCTAAATATGTGCCAGTTTAATGCATTTTATG
GTTGTCCTAAGTGCACCCAAAGAGGAGAAACAGTGATGACGGAATCTGGA
GGTAATGTTCGTAGTTTTccttttaagcctgaaaatccTGAAGGACCATC
TAGAACACACATAGAGACTGTACAGCacgcaaaaaatgttttagaaTCTA
CCAAGAAGGAACCAATTTGTGGCATTAAAGGACCGTCAGCGCTTTTACTA
TTGCCATCATTATGCCAGCAATATTGTCAAAGGAGTTGCAGTGGATTATA
TGCACGGAGTCCTACTTGGAGTGATGAAACTCTGTTTGAATCTTTGGCTC
GACAAGTCCCACAAGAAAGAACCTTTTTCCATCCACTCCAATGTAGAAAA
TGTAGAGAATAGGCTTCTTGCAATCAAACCACCAAATCATATCTCTCGAG
CACCCCGATCTGTGAAAAGCACTTTGAGCTATTGGAAAGCTTCTGAATTT
AGAAGTTTTTTACTCTACTATTTTGTCCCGGTAATGAAAGGATATTTTAC
AGATACCTACTACCAACACTTTTATTTACTTGTACATTCANcttgttata
catttttggaaagctaaggggtaggggaatcgaaattacgatgtttccaa
ttttttttcggacactttggtgtgattttcggacaaatacgac Coding sequence (CDS) from alignment at scaffold_292:130494..131436 >TCONS_00057559 ID=TCONS_00057559|Name=TCONS_00057559|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_292:130494..131436 (Clytia hemisphaerica)
ATGTTGCTTTTTTTGCCTCCTCAACTCGAAACTATGAATGGCATTAGAGA
AAATGGTataaaaataaatgataaaGTTACGCTGAAAGGAATGATTCTCT
GTGGAACGTGTGATATGCCTGCAAAAGCAAGCGTTCTAAATATGTGCCAG
TTTAATGCATTTTATGGTTGTCCTAAGTGCACCCAAAGAGGAGAAACAGT
GATGACGGAATCTGGAGGTAATGTTCGTAGTTTTccttttaagcctgaaa
atccTGAAGGACCATCTAGAACACACATAGAGACTGTACAGCacgcaaaa
aatgttttagaaTCTACCAAGAAGGAACCAATTTGTGGCATTAAAGGACC
GTCAGCGCTTTTACTATTGCCATCATTATGCCAGCAATATTGTCAAAGGA
GTTGCAGTGGATTATATGCACGGAGTCCTACTTGGAGTGATGAAACTCTG
TTTGAATCTTTGGCTCGACAAGTCCCACAAGAAAGAACCTTTTTCCATCC
ACTCCAATGTAGAAAATGTAGAGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057559-exon-scaffold_292-1491911889:130494..131436 | TCONS_00057559-exon-scaffold_292-1491911889:130494..131436 | Clytia hemisphaerica | exon |
| TCONS_00057559-exon-scaffold_292-1510915933:130494..131436 | TCONS_00057559-exon-scaffold_292-1510915933:130494..131436 | Clytia hemisphaerica | exon |
| TCONS_00057559-exon-scaffold_292-1575043694:130494..131436 | TCONS_00057559-exon-scaffold_292-1575043694:130494..131436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_292 | supercontig | scaffold_292:130494..131436 . |
Blast
The following BLAST results are available for this feature:
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