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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057565 ID=TCONS_00057565|Name=TCONS_00057565|organism=Clytia hemisphaerica|type=transcript|length=1559bp
GTCGCGATTGCTCTTTGGAACACATAGTCGTCTTTCTGCTTGGCCATTTC
GATTGGTTATTTTGTGCAGGAAACCATTGTCATTCAAGAATAATTTGTCA
TTGCTTTCGCGATTCTTGAATTCTTCCTCCTCCTCCAATTGCTTCAACCA
ATCTTCTGCTTCAGCATCTTCAGTAACTCTCAAGATCACGTTGACTGCTT
GGGGTAATCTTGATACTTCATCTGCATCTCTGTTCTTCAACCCTGGCTTG
TAATGATTTGGAAGCTGAATTGTTGAAGATACAGGTACCATCTAGCCAGT
TTCGATGTTAAGTTCTTTACATTGAAGAGGTGAACCAATGCTTGGTGGTC
GGTGTGAACAGTAAATTTGTTACCTTTCAGGACGAAATAGTGTGTTTTGA
TTGCATGCAACATTGCTAAGCATTTCTTTTCGGTGACCGTGTAGTTGCAT
TCTGCCTTGTTTAATTTTCTACCACCATAGAAAATTGGGTGTTTCTTTTC
ATCTTGGCCAATCTGTGTAAGCACGTGGCCGATTGCTGTACCTGACGCGT
CTGTGTTCAGGTTGAATTCCTTGGTGAAGTCTGGATAGGCCAAAAGTGGA
GGATGTAGGAGTGTTACGATCAGCATCTCATACCTATCTTGAAGGTCTGT
GCTTCATTGGAATTGTACATCTTGTCGCAACATATCATACATCGGCTTTG
TTATCTTGGAATGATCTTTGATGAATCGTCGATAATACGCGATGAGTCCT
AGTATGGATTGCAACTCTTTTTTGTTTGAGGGAGGCGTCTTGTTTTGCAA
TGGCACCAGGTTGGTTGGCGCAGGCAAAATTCCTTCTCTGCATACTATGT
GACCAAGGAATTTCAGcgaatctttttcaaaatgacatTTGGAGCTTTTG
GCTGTCAAACCTGCGTTTTGTAAAAGCTCGAAGACTTCTCGCAAGTGCCC
AAGATGCTTCTCAAATGTTTTACTGAAAACCACAATATCATCAATAAATA
TGAGAACGCAACGTTCTCTGATCTTTTTCAGCACATTCTTCAGCAGCTTC
TCGAACGTACCCGATGCTTCTTGCAAATCAAATGGCATTCTCACATATTC
GAAAAGGCCAACGTGACAGCTGAAGGCGGTTAACGGTGAACGTGAATATG
AAGCAAAGACTCTCGAATATAGGGCCCTTCCGAAAGAATTTATTTCAATA
TCCTTGCCACCAGCGATCGCTCTCCGTCAAGGTGATCTGCTGTCCTTTGC
AAATCGAAAATGACGTACGTGTGAACTGTTTCGATATGGTATTGTCAATT
ACCGCATGCATTCGTGGTACCGAGACACCAGAGCACGACTTACCACCATC
TACAGCCAGCACACTGTATTACTTTTATAAATAaactgttattttttttt
tttcgatttgtcACGCgtgttttcatttttgtttataGTTTTGTAAATAT
ACTTTTCTGATATGTCAtatgtgttttcattttatttattgtttCTGCTG
CCATATTCTTCCGACGGCATCATATGTTTGTGTATTAACTTCACATAGCC
AATTTTAAA Run BLAST on NCBI transcript from alignment at scaffold_293:264499..269360+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057565 ID=TCONS_00057565|Name=TCONS_00057565|organism=Clytia hemisphaerica|type=transcript|length=4862bp|location=Sequence derived from alignment at scaffold_293:264499..269360+ (Clytia hemisphaerica)
GTCGCGATTGCTCTTTGGAACACATAGTCGTCTTTCTGCTTGGCCATTTC
GATTGGTTATTTTGTGCAGGAAACCATTGTCATTCAAGAATAATTTGTCA
TTGCTTTCGCGATTCTTGAATTCTTCCTCCTCCTCCAATTGCTTCAACCA
ATCTTCTGCTTCAGCATCTTCAGTAACTCTCAAGATCACGTTGACTGCTT
GGGGTAATCTTGATACTTCATCTGCATCTCTGTTCTTCAACCCTGGCTTG
TAATGATTTGGAAGCTGAATTGTTGAAGATACAGGTACCATCTAGCCAGT
TTCGATGTTAAGTTCTTTACATTGAAGAGGTGAACCAATGCTTGGTGGTC
GGTGTGAACAGTAAATTTGTTACCTTTCAGGACGAAATAGTGTGTTTTGA
TTGCATGCAACATTGCTAAGCATTTCTTTTCGGTGACCGTGTAGTTGCAT
TCTGCCTTGTTTAATTTTCTACCACCATAGAAAATTGGGTGTTTCTTTTC
ATCTTGGCCAATCTGTGTAAGCACGTGGCCGATTGCTGTACCTGACGCGT
CTGTGTTCAGGTTGAATTCCTTGGTGAAGTCTGGATAGGCCAAAAGTGGA
GGATGTAGGAGTGTTACGATCAGCATCTCATACCTATCTTGAAGGTCTGT
GCTTCATTGGAATTGTACATCTTGTCGCAACATATCATACATCGGCTTTG
TTATCTTGGAATGATCTTTGATGAATCGTCGATAATACGCGATGAGTCCT
AGTATGGATTGCAACTCTTTTTTGTTTGAGGGAGGCGTCTTGTTTTGCAA
TGGCACCAGGTTGGTTGGCGCAGGCAAAATTCCTTCTCTGCATACTATGT
GACCAAGGAATTTCAGcgaatctttttcaaaatgacatTTGGAGCTTTTG
GCTGTCAAACCTGCGTTTTGTAAAAGCTCGAAGACTTCTCGCAAGTGCCC
AAGATGCTTCTCAAATGTTTTACTGAAAACCACAATATCATCAATAAATA
TGAGAACGCAACGTTCTCTGATCTTTTTCAGCACATTCTTCAGCAGCTTC
TCGAACGTACCCGATGCTTCTTGCAAATCAAATGGCATTCTCACATATTC
GAAAAGGCCAACGTGACAGCTGAAGGCGGTTAACGGTATGGacgattttt
tcattttcacttgaTGAAATTCAGACATCAGATTCATTGTCGAGAAGAAC
TTTACTTCATGCAAGGCTGCTAAAATATCGGACGTGTTCGGGATAGGATA
AGCGAATTTCTTGGATGCTGCATTGATCTTTCGATAGTCAACACACATTC
TTCAACCTTCTTCGGCTTTTTCAACCAAAACAATTGGGCTGCTGAATTCT
GAATTGCTTTTCCGTATGATGCCTTTACGCAGCAAATTCTGAACTTGATT
CTCGatctcttttcttttgaagGGTTCAACACGGTATGGTTGTTGTCGGA
TGGGAGTTGGGTTCAATAATTCTATCTTGTGCTCGATTCTGTCTGTTGAG
CCAAGTGGCTGCGAAGAATCTGGAAATAAGCCACTGAATTTCTCGACGAG
GTCTGTGATCTGCTTCTCTTGAACGTCGGTTAAGCAGCTTGACTTTGGTA
TCAAGGTTGGCTTGATTTCATTGTGCGGTGGTAAACTGGTATCGCTGTTG
TCTTCTTCTGCATACCCAACTGGTGCGGAGGCTTTGAATTCAATCTTTTC
ATCTGAAACATTTGTAATTACAAAGATAGCGTTATTGGCTGACACCGGAT
TCTTCCCCATGGAAGTAAACACTTTTATGCTAATTTTCTTAGCAAGAGTT
GTCAAGTTGCTTTTGTGGGATTCATTAAAGTCTGCATGGAATTGCTTGCT
TTCCCCCGGTAAAATGTGCAACATTTCATCGTTTGTTTCATGGGAAACAA
TGTCGAAATTTATTTCTTTCGTATGTCCTTGCGCGTTAATAGTTAGTTTG
CGCTGATGGAAGTTTACCGTAATGTCGTGATCGCTCAAGAAATCAATGCC
CAATATTGCTTCAGTAGCAATGTTTTCAAGGACCAGAAACTTGTGACTTA
TTAAAATGTTACGTTCGATTTCAAGTTTCAGGTTTATGAATTCTTTCGTA
AGAAGTGTCGTGCCCGATGCACTCATCAAagtgattttcgatttttcatc
AATACTTCTTTTAAGTTTTTTCATCATATTAACACTGATGATAGAGACCA
ATGATTCACtgtcaattaaaaaatttatgtttaaaCTTTCAACAGAAACT
TCAAGCATTGGAAGGCCTAGTCACTTTGTAGTATCCTTCTGGTGTTGATT
CTTGgaccgacaaaattttgaaatgtgttCATTTTTTTCGCACGTATGGC
ATGTGATATTTCTGTATCGTTTGGTGCGACATTCTGCCTCTACATGTTCC
TTTCTCTTGCAGAAGGTGCAAGTCTTGTCGTTGCTGCGGTCTTTCGTTAT
TGAATTTAGCGATGATTTGACATTTTTGGTGATCTTCTTTAGCTGTTCGA
TCTGTCTTGTCATTGCCACTGGATCGAAGTCATTGTTGTTCATGACCTTG
GAATGGGAAATACTTCTTTCATTGTTCATTAACAGCTGGCGTACCATGTT
CTTTAATTCGCCATTCTGCTGGTTCGGTCGTTCAAGTGCATTCTTGAGCT
GAATGAAACGTACAGCATCGTTGTACGTTTTTGGCTGCTTCATCTGAAGC
CGGTAGGCGAGTTCTGGCCTAAGATTTGCGGTGAGAATGTCTATCTTTGT
GGTGTCAGGTGTTTCGAGCTCTTCAAACGATAGCTCGAGTCTCTTCAAGA
AACTTTCAAGATCTTCACTTTCCTGTCGCTGCGTGTATAGGATAGCACGG
TGCTTCGCAATATCTTCTGGCGAACAGAATTGATTTGTTATACGCTCTTT
ACATTGTTTGTAGTTCTTCTGGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGCAGATCAGCTATTCTGGTGCTGAGGTGTGGACG
ATGGTCGATTGGTTGCGTTTGCTTCTGCCTTTGGTCAGCCATCATTTTCT
CGAATGCTGCCACGAGTTCTTTCGATTCACTTTCAGTACCGATTGGATTG
ACATGTCTTTCAACGTTCGGACTGTGTTTGCTTTCGGCAACTTGCTGGAT
TGAGTCAATCTTGTCACCGTCGTTCCCTCTTGGAAATAGATAATATTCAT
CTTCTTTGAGACCATTTAACTTGTTTTCTGTCTGGCTGCTGTTCATAACT
GTTTTTATGGTTATTGGTACTTTGAAAGCCTTCTTTCTGTGATTCCTTTT
TGAGGATGGATGTTGGAACGATATCTTTGTTGACTCAGGGGTGTACAGCA
AAGTTGAATTTTCAGCTGACGATTCTTCTATTGATAACGGTGTGTTTGAC
TGTTCCTTTTCAGCTTCTTCGTCTTCTTCGATTGAAGATAAGCTTGTTTT
TGACTCGTTTTCTTCTTCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GGCACAGAGGTTAATCTTTTTCCTTTTCGAAACCACCTCTTACTCATTTT
TTAGATATCACTTCTTGTATGATTGAATGCTTGTTTGAAAGCGTCTGTTT
GTTTGAATCTGTCTATTTGTTTAGAAACAATTGCTTTCTTATCTAATCTG
TGTTGAGataatttctttattatttATGTTTACCTCATCTTGGGTATGAT
TTGGCTGATCTGTTTGTTTATCATTTGGCTTCTGTGCTGCATTGcttgtt
tctttgttttgggCTATTACTTCATTCTCTTTGAAGTTTAgctttgcatt
tttcaaatctctTTCTGCATTAATTATAATTGTTTCATTTGTGTTTGTTT
CCATAGAAACGATAACTGGCTTCTCCTGAAGCTGTCTTCAAGTTTTACAT
ATAACTGATTCGCTGGGGGTTTTTTCTTGACCCCAGTTTCCATGATATAT
TTTCTATCGATTTCAGCGGTAGCTAATTTGCCTGTACGTCGTAATTGTAC
CTGGCTATTATTTTACCTTTTCCTTGGCTTCCGCTTTTATACTGTATTGA
TAGCTCTGCTGTTAACTTTCTTTATAATGTTTATTCAGGTGAACGTGAAT
ATGAAGCAAAGACTCTCGAATATAGGGCCCTTCCGAAAGAATTTATTTCA
ATATCCTTGCCACCAGCGATCGCTCTCCGTCAAGGTGATCTGCTGTCCTT
TGCAAATCGAAAATGACGTACGTGTGAACTGTTTCGATATGGTATTGTCA
ATTACCGCATGCATTCGTGGTACCGAGACACCAGAGCACGACTTACCACC
ATCTACAGCCAGCACACTGTATTACTTTTATAAATAaactgttatttttt
ttttttcgatttgtcACGCgtgttttcatttttgtttataGTTTTGTAAA
TATACTTTTCTGATATGTCAtatgtgttttcattttatttattgtttCTG
CTGCCATATTCTTCCGACGGCATCATATGTTTGTGTATTAACTTCACATA
GCCAATTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057565-exon-scaffold_293-1491911889:264499..265633 | TCONS_00057565-exon-scaffold_293-1491911889:264499..265633 | Clytia hemisphaerica | exon |
| TCONS_00057565-exon-scaffold_293-1510915933:264499..265633 | TCONS_00057565-exon-scaffold_293-1510915933:264499..265633 | Clytia hemisphaerica | exon |
| TCONS_00057565-exon-scaffold_293-1575043694:264499..265633 | TCONS_00057565-exon-scaffold_293-1575043694:264499..265633 | Clytia hemisphaerica | exon |
| TCONS_00057565-exon-scaffold_293-1491911889:268937..269360 | TCONS_00057565-exon-scaffold_293-1491911889:268937..269360 | Clytia hemisphaerica | exon |
| TCONS_00057565-exon-scaffold_293-1510915933:268937..269360 | TCONS_00057565-exon-scaffold_293-1510915933:268937..269360 | Clytia hemisphaerica | exon |
| TCONS_00057565-exon-scaffold_293-1575043694:268937..269360 | TCONS_00057565-exon-scaffold_293-1575043694:268937..269360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_293 | supercontig | scaffold_293:264499..269360 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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