TCONS_00057566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057566
Unique NameTCONS_00057566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057566 ID=TCONS_00057566|Name=TCONS_00057566|organism=Clytia hemisphaerica|type=transcript|length=2486bp
accacaaCCAGCCGTTCGGCTGCACTCTCCACATACACACATCATGATGA
GAAACATATTAACCAATCAAAACCCTTCTTTTTACCCTTACTCTTTCCCT
GAATATCAAAATCGTTTGCTCAACAGAACGGATAGACACATCAATGTGGA
GGATGATGATAGTGATACTTCGTCAACAATCTCCAACAACGATGTAGATG
TTAAAGAGGCTCTTCGTTCATCTATCAGCCTCAATCTCAAATCCAAATTC
CAAAAAGGAGATTATCCACCGACACTTCACAACAGTCTGACGTCATCATC
TACGTCATCAACCTCGGCCCCATACCTTTACCGCCCACATCTCGACCTTC
TGGACAAACCAGCACGACAAGACGACGAAATGTCTCACGTTTCAACGGAT
AGTATTGATATTGGAACGCCCGCATCGATGGCGGCCGCCCCtggtaaaaa
agaaaagaaacctaAAAAACCAGAAGATAAAGAAACGGCTGCCATGCGAC
GAGAACGAAACAGATTGGCCGCTCAACGCTGCCGACAACGCAGAAGGGAT
CGAATCGACAAACTCGAAAAAatatGCGATAAGCTTGAAAATGACGGTCA
AAAGCTTGAAACAGAAATTACCGGACTTCAAAGTGAGATGTcacatttac
aaaaaattctGAACAATCATAAATGCATGGCCATGCCTCCTCGAATAAAA
AACGAACGCGAATATCCATTTGATAGATACGATAGTCGGATTGTGTCGAG
TTAGTTAACGTTGTTTATGTTCATTACCTGTGAAAAGCTCAAATTGTTGC
TTTGAGAACGCGGGAGTAGGTATTGGTGACAAGTGGGAAAACTGATTCCA
ATCGTAGGACAGGAGATTTACAATGGCGATAGCAATGGATTAtgtttgaa
atctttttgatCTTTTGAATCTGGTTTTGTTAAACGTTGGTTGTTTGATT
TTGAGTACCGAAAAAACTTAGCTTGAATCTTTTCACTTTTGGTATTACAT
CGCAAAACGTAAAAGCTTCTATTAAGCTTTGCGAGATGATTTCTCACTGA
ACAATATCATTGAGTGACAAACAGGACCTCTCATTCTAATCATTGATATT
ATATCTCAAGTTATATGGACTATTTGGAAATAGATGTTCAAGAGGAAAAC
GAGAGGATCCACCTGGGGTACTTAAGCAACACaggtgatgggtatgtgcg
agccattagggtaccttttcataccttaaaagtccctcaaagggatACAA
ATTAATAGGTTTGTCTGAAAGGGGCTCAAAACCACTAAAGTCGAGAACTT
CCCTCTCAAAGGGTGATGATTTACGAATATTTTGATCAGATCTTGGACAT
ACTCGTCACCTTGCATACCTGTACCAGACCCCCCCCCTTGACCTTTTACT
TACTGGTTATAaatgtttttaagttttaaattgttgtagatttttaaaaa
taacagtTACATGCAAGTATATATATGATCGTTACATAAAATTATACCAC
ATTTTTATGTATCaatgtttttagaaaaaggttttgtttatatttattaT
ATCAACAAAATTCATCAATTCTCCAAAAATTCTACTGCTCCTTATAAGAC
CGAACCTAGATTGAGCCTAGGTAAAAAATACAAGCTTTGACTTACACATT
TACCTTCAGGCAAAGAATCCAGGTGGTTTATTTAAGCCTAGCGAACGGTG
AATTTCAACTCCACGGAAAAGAATTATGATACAAACATTAGCAGATTCGT
GTTAAAAAGTCACAAagaaaaacgtcgagtaaagctctgattggctgaat
atTGCACACATAAGCATATTTAAATGAAATGAGTATGAGAAAATGCATAA
AGATTTCCTTCTCAATTTAATTCCATTCAAAGTCTATAGCCCCTCTGGAT
TTCATAAATTAAGCAAGGCCTAGTGGAAAGGTGTCAAACTTCATTTTGGC
AAAATGAATCAAACGAAGTATATGCACATATATGGTATAATAGAGCCCGT
ACACCTCTCTTCTCATCACCTAGCCAGATCCTGATTGATTACTATGCAAT
CTCTACAATAAAGGAATGACTGGTGATTTTTATGTAGGTTTTTGGGAGTA
ATATTAACTACACCTTCCTTTGATGACTGTATTTTCTGGAGcaagaatat
gaaaaaaaactacTTAACTTAAGTCGCTTTTTATTCAGGCACATTTCTGT
TGCACGGTCCGCGTGTTTTTCATATACAAAAGATGGATTAGAAGCAATAT
TTATCGCCAAAATTCTAataataaaacatgaaaaaaagaaagtgcTAGAT
CTTATCTGCCATTCGAATAAATCCGACGAAAATTGTAGCTCACTCGATCC
TTTTATAATGGGCGGCCGCCACcattgtctgtacacaaacccaatagtga
ggttaagtaaatcggtaaaatcacgacgacgaacgaaaatttaacaggct
agtgagtttcaaccaatcgaatttcgtattttcact
Run BLAST on NCBI

transcript from alignment at scaffold_293:16625..21487-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057566 ID=TCONS_00057566|Name=TCONS_00057566|organism=Clytia hemisphaerica|type=transcript|length=4863bp|location=Sequence derived from alignment at scaffold_293:16625..21487- (Clytia hemisphaerica)
ACCACAACCAGCCGTTCGGCTGCACTCTCCACATACACACATCATGATGA
GAAACATATTAACCAATCAAAACCCTTCTTTTTACCCTTACTCTTTCCCT
GAATATCAAAATCGTTTGCTCAACAGAGTAAGTGTTATCGCTTCATCTCA
CTCTGATTCGACTTGATAGTCTTTATAGTTCGACTAGTTCGTTTATAGCT
TCCTTAATTCAACTATTAGGGCTCAAACTAACAAAGTTCAGCAGACCTTT
TGTTTTTTGTTCTCTGAAGATTTTTTTCTCTTCCCTGAATATTTCAAGTA
CCGGACCAGGGACTTCTTTCTACCTTGATTTGATATGGAAAGTCAGCCGG
CATTTGTGCAAATGAATGATATTTCCCATCTGCAATCAGGTGATTTTGAA
CTCCTTTTGCACCTTTCAGACGGATAGACACATCAATGTGGAGGATGATG
ATAGTGATACTTCGTCAACAATCTCCAACAACGATGTAGATGTTAAAGAG
GCTCTTCGTTCATCTATCAGCCTCAATCTCAAATCCAAATTCCAAAAAGG
TTTGTCAACACTGTTCAATTTTGCTTTGCCTGCACCAGACTATCACGAGC
TTTTTAGACAACGTTTTGCCTGTAATCTTTTTACAATACTCCCCCATAAG
ATTCTACCTACCTATTTGTACCTATTTGTGGCTTCTCCTTGAACATCTCA
TCCAACTCGTTGAGTCCGATGCTTCGACATTTCCTTGAGGCTGTTGGAGT
CAGCTTGCCTAAGGTTGAAATAGTGGGCAAGCAGTGGTTCGCCCGGAACA
ATTGTGAGGAAGGTGTCTAAGTGTTTTTTGAATACTTCTTTGGGGCAGTT
TTTCTAATCTCTTATTGGTCTGGGTCTTATTGTTGGATGAAGATTAACAT
TTAGGATGATGGACATTCTGGGATGAATAATTTGAAGTCAATACAGTATT
ATTTTAAGAAATTGGCCTCACTTCGATGGAAAACAGAACACCTAAGACGT
AATAGCCCAACAAAATGAAGAAATCTTTGTCTTAAAATTCGGTGTAGAAA
AATCTTTGCTTTAACTCTGTTTACAATTTTGTGACTTGGTTTTCACAAAA
GTTTAAACTATGATATTTACAAGAAATCTCCTTCATGCATTTCATGTACG
TCCTTCAAACTTGATTGATGTTCAGTTCTTAAAATCAAAGGAAATTAAGC
AATATTTATTTAAAGAATTTGGTCTGATAATTTTTTGGGTAAACTCTTTN
TTTTCTGGCTTATTCGCGAAATTAAATCCACGCGAAATATTTCAAAACTC
TGACTCGCGAAATTAAATCCAGAAAATTTCGCGATTTTTTTCGCTCGCGA
AATTTAATCTCGCGAAATTTAATCCGGTTAAAGNTTGTTTTCCGTTTGCA
ACAAAATCTTTATTTTGACTACTTTGTTAAAAAATAGCCGATCAGTGAAA
ACCTATTCAGATTTGTGAGTCAAATACTTTAATCGGATTAATTTTCGCGA
GATTAAATTTCGCGATTTCGCGAATTTTGGTCNTAATTCAACAAATCTCG
ATCGTCAATTCTTTCAGGAGATTATCCACCGACACTTCACAACAGTCTGA
CGTCATCATCTACGTCATCAACCTCGGCCCCATACCTTTACCGCCCACAT
CTCGACCTTCTGGACAAACCAGCACGACAAGACGACGAAATGTCTCACGT
TTCAACGGATAGTATTGATATTGGAACGCCCGCATCGATGGCGGCCGCCC
CTGGTAAAAAAGAAAAGAAACCTAAAGTAAGGCTTTAGTCTGCAATCTGT
TTGAGAAACGGTTGGCAAACGATATCATACTCCAGGATGCATCGTCTCTT
ATTTTCTCCCTATTTTCTACTTTTCTATCTTCTATCCTGATTTTCTGTCT
TTCTCAAGTGTTTCTAACTGTTTTCTAAGTATTTTTCTGAAATTTGCCCG
TACCGGTGAAACAGGTCTCCGACCCCGGCTCGAACCACCAAATGCAAGCA
ACCTTGGTTTACAAACCCAATGCCTAACCGCTTACGCCAACGAGACACAC
CAGAAAGCCGTCATTCACAAATACTTATAGCGTGTAAATTACAGACCTTA
ATTAAGAAAGCTCCCAACCCTACCGGTGCTCCTACAAGGATCCCTACGGG
ATCCTAAGTTAAGTCACAGGGTACGAATGCCCCTAAGAAGGCCTTCGGCC
TTATATTGTGACTCTCGAGCTCCAACCCTAACCCTAACTGATAATAACCG
AACCCCCGTCTAGGTCCGCGGATTGAAAAATTTCATTTGCATCCTGGAGT
ATGATATCGTCTGCCAACCTTGAGAAACAGTGAACATAATTTTAAAAAGA
TAATGACTTTTTTGTGCCAACGTTATGACCTATCATTTCTTGGGAATAGA
ATATCCATTGATTGAACAAACAAGTTATTTCATATTAAATATAACGAACT
CTAACTGATGAATTTTTTACCAAAGCCGGAGACAACTTTTTACATCTTAA
TTTCCACAGAAACCAGAAGATAAAGAAACGGCTGCCATGCGACGAGAACG
AAACAGATTGGCCGCTCAACGCTGCCGACAACGCAGAAGGGATCGAATCG
ACAAACTCGAAAAAGTAAGTTTGATCTCGTTTTCCTAGATTGTTCACCAG
TTATAAAACTATGTATTTAAATTTTAAGTCGTCAAGAATTTTTATAGCTG
AATTGATATACCTTCCTAAAATCTTCAAAATATCTCTGAAATAACTGAAT
TCTCGTATATGTCTGGTTCGTAGACACATAGAAACCATGCGGGTCACGCA
TTTTTAATGGCAAATAAAAAGGTTTTATTTCCCACCCAAGAGATCCCTCT
CTAGCTTTTCGGGTTTTGAAGTTAATCTTTTCACACAGATCTTTTTCAGG
TAACTTTCAACCTTTTTAATGATCTCTATTCTCTTCTTTTTATTTTAGAT
ATGCGATAAGCTTGAAAATGACGGTCAAAAGCTTGAAACAGAAATTACCG
GACTTCAAAGTGAGATGTCACATTTACAAAAAATTCTGAACAATCATAAA
TGCATGGCCATGCCTCCTCGAATAAAAAACGAACGCGAATATCCATTTGA
TAGATACGATAGTCGGATTGTGTCGAGTTAGTTAACGTTGTTTATGTTCA
TTACCTGTGAAAAGCTCAAATTGTTGCTTTGAGAACGCGGGAGTAGGTAT
TGGTGACAAGTGGGAAAACTGATTCCAATCGTAGGACAGGAGATTTACAA
TGGCGATAGCAATGGATTATGTTTGAAATCTTTTTGATCTTTTGAATCTG
GTTTTGTTAAACGTTGGTTGTTTGATTTTGAGTACCGAAAAAACTTAGCT
TGAATCTTTTCACTTTTGGTATTACATCGCAAAACGTAAAAGCTTCTATT
AAGCTTTGCGAGATGATTTCTCACTGAACAATATCATTGAGTGACAAACA
GGACCTCTCATTCTAATCATTGATATTATATCTCAAGTTATATGGACTAT
TTGGAAATAGATGTTCAAGAGGAAAACGAGAGGATCCACCTGGGGTACTT
AAGCAACACAGGTGATGGGTATGTGCGAGCCATTAGGGTACCTTTTCATA
CCTTAAAAGTCCCTCAAAGGGATACAAATTAATAGGTTTGTCTGAAAGGG
GCTCAAAACCACTAAAGTCGAGAACTTCCCTCTCAAAGGGTGATGATTTA
CGAATATTTTGATCAGATCTTGGACATACTCGTCACCTTGCATACCTGTA
CCAGACCCCCCCCCTTGACCTTTTACTTACTGGTTATAAATGTTTTTAAG
TTTTAAATTGTTGTAGATTTTTAAAAATAACAGTTACATGCAAGTATATA
TATGATCGTTACATAAAATTATACCACATTTTTATGTATCAATGTTTTTA
GAAAAAGGTTTTGTTTATATTTATTATATCAACAAAATTCATCAATTCTC
CAAAAATTCTACTGCTCCTTATAAGACCGAACCTAGATTGAGCCTAGGTA
AAAAATACAAGCTTTGACTTACACATTTACCTTCAGGCAAAGAATCCAGG
TGGTTTATTTAAGCCTAGCGAACGGTGAATTTCAACTCCACGGAAAAGAA
TTATGATACAAACATTAGCAGATTCGTGTTAAAAAGTCACAAAGAAAAAC
GTCGAGTAAAGCTCTGATTGGCTGAATATTGCACACATAAGCATATTTAA
ATGAAATGAGTATGAGAAAATGCATAAAGATTTCCTTCTCAATTTAATTC
CATTCAAAGTCTATAGCCCCTCTGGATTTCATAAATTAAGCAAGGCCTAG
TGGAAAGGTGTCAAACTTCATTTTGGCAAAATGAATCAAACGAAGTATAT
GCACATATATGGTATAATAGAGCCCGTACACCTCTCTTCTCATCACCTAG
CCAGATCCTGATTGATTACTATGCAATCTCTACAATAAAGGAATGACTGG
TGATTTTTATGTAGGTTTTTGGGAGTAATATTAACTACACCTTCCTTTGA
TGACTGTATTTTCTGGAGCAAGAATATGAAAAAAAACTACTTAACTTAAG
TCGCTTTTTATTCAGGCACATTTCTGTTGCACGGTCCGCGTGTTTTTCAT
ATACAAAAGATGGATTAGAAGCAATATTTATCGCCAAAATTCTAATAATA
AAACATGAAAAAAAGAAAGTGCTAGATCTTATCTGCCATTCGAATAAATC
CGACGAAAATTGTAGCTCACTCGATCCTTTTATAATGGGCGGCCGCCACC
ATTGTCTGTACACAAACCCAATAGTGAGGTTAAGTAAATCGGTAAAATCA
CGACGACGAACGAAAATTTAACAGGCTAGTGAGTTTCAACCAATCGAATT
TCGTATTTTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036302XLOC_036302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057566-exon-scaffold_293-1575043694:21361..21487TCONS_00057566-exon-scaffold_293-1575043694:21361..21487Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1575043694:20939..21068TCONS_00057566-exon-scaffold_293-1575043694:20939..21068Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1575043694:19712..19920TCONS_00057566-exon-scaffold_293-1575043694:19712..19920Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1575043694:18874..18978TCONS_00057566-exon-scaffold_293-1575043694:18874..18978Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1575043694:16625..18539TCONS_00057566-exon-scaffold_293-1575043694:16625..18539Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1510915933:21361..21487TCONS_00057566-exon-scaffold_293-1510915933:21361..21487Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1510915933:20939..21068TCONS_00057566-exon-scaffold_293-1510915933:20939..21068Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1510915933:19712..19920TCONS_00057566-exon-scaffold_293-1510915933:19712..19920Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1510915933:18874..18978TCONS_00057566-exon-scaffold_293-1510915933:18874..18978Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1510915933:16625..18539TCONS_00057566-exon-scaffold_293-1510915933:16625..18539Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1491911889:21361..21487TCONS_00057566-exon-scaffold_293-1491911889:21361..21487Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1491911889:20939..21068TCONS_00057566-exon-scaffold_293-1491911889:20939..21068Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1491911889:19712..19920TCONS_00057566-exon-scaffold_293-1491911889:19712..19920Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1491911889:18874..18978TCONS_00057566-exon-scaffold_293-1491911889:18874..18978Clytia hemisphaericaexon
TCONS_00057566-exon-scaffold_293-1491911889:16625..18539TCONS_00057566-exon-scaffold_293-1491911889:16625..18539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:16625..21487 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.338543	9.43443e-10	0.327697	0	0	0	19.3289	15.5679	0.364776	1.09758	0.283666	3.90545	6.30205	6.5606	6.94343	5.31288	5.24529	7.26662	9.05718	8.36134	6.86687	7.78207	8.37447	4.41794	2.19173	9.8291e-09	14.4464	13.5571	1.56132	0.463639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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