TCONS_00057576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057576
Unique NameTCONS_00057576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057576 ID=TCONS_00057576|Name=TCONS_00057576|organism=Clytia hemisphaerica|type=transcript|length=651bp
CAACGTTGCATCACTGCCTTTGCAATGGGTTGAcgaaatttttaacaaag
acATTGTATTAGCAAGTTTCTGACATGAGAAGACTTATGTATGCGTGTGT
AACAGAAAGTTCAGATCTTGACAACACGTCGTCGCagaaatttttatcat
tttttaaactttctgtaAAACTTCATCATGAAAACAACATCAAGCCTTCG
ATATGTTTAGatgCTGAATCGTAGCAGAACTTTAACCAACCAAACCATCT
TCACAATCTGGTGCTGTAATCACAAAGATTAGAATCTTTCTTCGATGGAT
ATACAGTACCACAGAATGTTTAGAAGCCTAACTGCGTTTCCTGCTTTCCC
CATTCTTGGAAACAAATATTGCTATATTTTTTACTCAATGAATCGAAGAA
GACCTCTGCAGTATTCTCAAATGGTTCAAGAACGTCCTTCGATAAAAACA
TTGTGTTAATTCACTATGAGGATTTTGTGGATATTGAGAATTCTTTGCTG
TTTTGACTTTCAGAAATCTCACCCATGACTTTCTGGCAATTCAGGCAATT
CAGAACTAGCGAAGCTATCGCTTTTAATTGGACTGCGATCGACATCGATG
ATAATGCTACGTATTTTGATTAACCTTGAGCTTGATTCCCTGGAATTTGA
T
Run BLAST on NCBI

transcript from alignment at scaffold_293:185547..186919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057576 ID=TCONS_00057576|Name=TCONS_00057576|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at scaffold_293:185547..186919- (Clytia hemisphaerica)
CAACGTTGCATCACTGCCTTTGCAATGGGTTGACGAAATTTTTAACAAAG
ACATTGTATTAGCAAGTTTCTGACATGAGAAGACTTATGTATGCGTGTGT
AACAGAAAGTTCAGATCTTGACAACACGTCGTCGCAGAAATTTTTATCAT
TTTTTAAACTTTCTGTAAAACTTCATCATGAAAACAACATCAAGCCTTCG
ATATGTTTAGGTAAGAACGTTCTCTTCATTCTGTTCTATCTATTGGAGAT
TTTTTAGAGAAGATTGTTCTTGGATTCAAGAGATATTCTGAGATCGAAAT
TCTCTTTCGTTTCTGATGACCTCAAGTCAAATTTCGGAAAGAAAATATTT
TTTGATCTTAAGTTTTAACTTTAAACTTTGAGTTTCTTCAACGAAATACA
CATCCATCGGTCTTGTATATTTAGCCTGTTTTCAAACCTGAAAAGTGAAA
CTTTTATAAAATTATTCATTTTTTTTTGTTTTTTAGATGCTGAATCGTAG
CAGAACTTTAACCAACCAAACCATCTTCACAATCTGGTGCTGTAATCACA
AAGATTAGAATCTTTCTTCGATGGATATACAGTACCACAGAATGTTTAGA
AGCCTAACTGCGTTTCCTGCTTTCCCCATTCTTGGAAACAAATATTGCTA
TATTTTTTACTCAATGAATCGAAGAAGACCTCTGCAGTATTCTCAAATGG
TTCAAGAACGTCCTTCGATAAAAACATTGTGTTAATTCACTATGAGGATT
TTGTGGATATTGAGAATTCTTTGCTGTTTTGACTTTCAGGTACGAAAATT
AATTTCTTGTTTGCTGTTATTTATTTTGATTGTTTGAAGACTTTTTGTTC
AATTTTGTAAAATCTTTTGTTCAATTGCTAAGAATTTTTTGCGAGTTTTC
CCCAATTTTCGTTATTTTCTACCTTTGCATTTTTTTGTGAAATTTGAGAC
CTTTTTCGTTTAATCTTTGTTGGTGCTTTTTGATTTTGTGTTGATTTTTT
TTCTTTAATTTTTTTGTCTGTTTTGGTCAACTTTTCCCTTCTTAGTTTTG
TATTTATTCCAACTTCAGATATTTTTAATCACTTTTTTTCTTAGCCTCTT
AATTACCTCCATTGGTGTTTCAATTTTGTGCCTGAAATAAACTAATGCCT
TTGTTTAAGTTTAATTTCTAAAACTTTGTTAACGTCCGCCGTCAACATAT
GTAGTATTTTAACAGAATCTATCATTTTTTCTTAGAAATCTCACCCATGA
CTTTCTGGCAATTCAGGCAATTCAGAACTAGCGAAGCTATCGCTTTTAAT
TGGACTGCGATCGACATCGATGATAATGCTACGTATTTTGATTAACCTTG
AGCTTGATTCCCTGGAATTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036305XLOC_036305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057576-exon-scaffold_293-1575043694:186710..186919TCONS_00057576-exon-scaffold_293-1575043694:186710..186919Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1575043694:186131..186433TCONS_00057576-exon-scaffold_293-1575043694:186131..186433Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1575043694:185547..185684TCONS_00057576-exon-scaffold_293-1575043694:185547..185684Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1510915933:186710..186919TCONS_00057576-exon-scaffold_293-1510915933:186710..186919Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1510915933:186131..186433TCONS_00057576-exon-scaffold_293-1510915933:186131..186433Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1510915933:185547..185684TCONS_00057576-exon-scaffold_293-1510915933:185547..185684Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1491911889:186710..186919TCONS_00057576-exon-scaffold_293-1491911889:186710..186919Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1491911889:186131..186433TCONS_00057576-exon-scaffold_293-1491911889:186131..186433Clytia hemisphaericaexon
TCONS_00057576-exon-scaffold_293-1491911889:185547..185684TCONS_00057576-exon-scaffold_293-1491911889:185547..185684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:185547..186919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32773	3.44398	5.54378	5.69047	0.216487	0.171071	0	0	0	0.0837817	0	0	0	0	0	0.0489121	0	0	0	0.0892864	0.155212	0.113561	1.19641	1.4224	0	0	0	0.23492	0.890894	1.72459
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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