TCONS_00057601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057601
Unique NameTCONS_00057601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057601 ID=TCONS_00057601|Name=TCONS_00057601|organism=Clytia hemisphaerica|type=transcript|length=400bp
AAAAAGAGCTTTTAGAGCTCAACCCATCAGTGATAAACAGGCGTTCCAAC
TAATCATCTTCTTCTTTGGAAATGGCGGTGCACCGGAGCTAGCTACACAC
GTTATCTATTCGTCGCAActcaatgaaaagaaaataaaaaaacgttttga
cCAATTTCGCTGGGTCTCTAACAACCTATCTGTAAAAGGACATACTTGGT
ATTATCATGACTTACACCGCCAATCCCAGTGCTACCTGAACGGCACACCT
AAAATTCAACAATGATAAACTCTATGCACAAATGGTTTCCTACAAatgct
tttttttttgttgtttacaaGTTTTTAATATTACCAACAAATTTGTTAAT
AATTTACGTTATAATAGGCTTATCATCAATATCATGATTTAACATTTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_293:243697..244096

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057601 ID=TCONS_00057601|Name=TCONS_00057601|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at scaffold_293:243697..244096 (Clytia hemisphaerica)
GTGAAATGTTAAATCATGATATTGATGATAAGCCTATTATAACGTAAATT
ATTAACAAATTTGTTGGTAATATTAAAAACttgtaaacaacaaaaaaaaa
agcatTTGTAGGAAACCATTTGTGCATAGAGTTTATCATTGTTGAATTTT
AGGTGTGCCGTTCAGGTAGCACTGGGATTGGCGGTGTAAGTCATGATAAT
ACCAAGTATGTCCTTTTACAGATAGGTTGTTAGAGACCCAGCGAAATTGg
tcaaaacgtttttttattttcttttcattgagTTGCGACGAATAGATAAC
GTGTGTAGCTAGCTCCGGTGCACCGCCATTTCCAAAGAAGAAGATGATTA
GTTGGAACGCCTGTTTATCACTGATGGGTTGAGCTCTAAAAGCTCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036327XLOC_036327Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057601-exon-scaffold_293-1491911889:243697..244096TCONS_00057601-exon-scaffold_293-1491911889:243697..244096Clytia hemisphaericaexon
TCONS_00057601-exon-scaffold_293-1510915933:243697..244096TCONS_00057601-exon-scaffold_293-1510915933:243697..244096Clytia hemisphaericaexon
TCONS_00057601-exon-scaffold_293-1575043694:243697..244096TCONS_00057601-exon-scaffold_293-1575043694:243697..244096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:243697..244096 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.362266	0	0.205758	0.751472	0.770754	0.716423	0.447137	0.156526	0	0	0.37112	0.494139	0.64146	1.26568	0.792324	0.557759	0.714607	0.394907	0.206621	0.538773	0	0	0.387249	0.797715	0.711941	0.254696	0	0.206165	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top