TCONS_00057603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057603
Unique NameTCONS_00057603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057603 ID=TCONS_00057603|Name=TCONS_00057603|organism=Clytia hemisphaerica|type=transcript|length=363bp
AATTCAACCTAGTGCTTGGTCTAGATTTCTTGAAGAGAATCAAAGCAGTT
GTGAACCTGCCGAATGAGAACATCCAGACGAAGAAAGGAATGGCACGGGT
GAACCCTTCAAAGTTCAAGCATCCCAAGTTGTTCGTTAAAGGTCCATTCG
TATATAACAAGTCAATCAAGAAGCTAATGATGGGACTATTATCACTATGG
CTCGTAACTGTAGCAGCCATGACAATGCGAATAGCCATGACGACCACAAA
CGAGACTCCAACTACGACAGTCACAAAGGAGACCTCAGCTATGGCATGCA
GCAATTTGAAGACCATCGATATGAATTCTACCAAGTACTCAACGGGCATC
ACCACAATCGAAG
Run BLAST on NCBI

protein sequence of TCONS_00057603-protein

>TCONS_00057603-protein ID=TCONS_00057603-protein|Name=TCONS_00057603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
FNLVLGLDFLKRIKAVVNLPNENIQTKKGMARVNPSKFKHPKLFVKGPFV
YNKSIKKLMMGLLSLWLVTVAAMTMRIAMTTTNETPTTTVTKETSAMACS
NLKTIDMNSTKYSTGITTIE
Run BLAST on NCBI

transcript from alignment at scaffold_293:259708..260070

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057603 ID=TCONS_00057603|Name=TCONS_00057603|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_293:259708..260070 (Clytia hemisphaerica)
CTTCGATTGTGGTGATGCCCGTTGAGTACTTGGTAGAATTCATATCGATG
GTCTTCAAATTGCTGCATGCCATAGCTGAGGTCTCCTTTGTGACTGTCGT
AGTTGGAGTCTCGTTTGTGGTCGTCATGGCTATTCGCATTGTCATGGCTG
CTACAGTTACGAGCCATAGTGATAATAGTCCCATCATTAGCTTCTTGATT
GACTTGTTATATACGAATGGACCTTTAACGAACAACTTGGGATGCTTGAA
CTTTGAAGGGTTCACCCGTGCCATTCCTTTCTTCGTCTGGATGTTCTCAT
TCGGCAGGTTCACAACTGCTTTGATTCTCTTCAAGAAATCTAGACCAAGC
ACTAGGTTGAATT

Coding sequence (CDS) from alignment at scaffold_293:259708..260070

>TCONS_00057603 ID=TCONS_00057603|Name=TCONS_00057603|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_293:259708..260070 (Clytia hemisphaerica)
TTCGATTGTGGTGATGCCCGTTGAGTACTTGGTAGAATTCATATCGATGG
TCTTCAAATTGCTGCATGCCATAGCTGAGGTCTCCTTTGTGACTGTCGTA
GTTGGAGTCTCGTTTGTGGTCGTCATGGCTATTCGCATTGTCATGGCTGC
TACAGTTACGAGCCATAGTGATAATAGTCCCATCATTAGCTTCTTGATTG
ACTTGTTATATACGAATGGACCTTTAACGAACAACTTGGGATGCTTGAAC
TTTGAAGGGTTCACCCGTGCCATTCCTTTCTTCGTCTGGATGTTCTCATT
CGGCAGGTTCACAACTGCTTTGATTCTCTTCAAGAAATCTAGACCAAGCA
CTAGGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036329XLOC_036329Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057603-proteinTCONS_00057603-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057603-exon-scaffold_293-1491911889:259708..260070TCONS_00057603-exon-scaffold_293-1491911889:259708..260070Clytia hemisphaericaexon
TCONS_00057603-exon-scaffold_293-1510915933:259708..260070TCONS_00057603-exon-scaffold_293-1510915933:259708..260070Clytia hemisphaericaexon
TCONS_00057603-exon-scaffold_293-1575043694:259708..260070TCONS_00057603-exon-scaffold_293-1575043694:259708..260070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:259708..260070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.46075	0.224652	1.56505	2.04155	0.93202	1.47299	6.21985	4.43653	0.388265	1.92372	1.4004	3.06857	12.1195	10.2894	8.26971	15.3618	9.13454	7.4449	0	1.53758	3.11835	6.19274	3.69801	4.26432	5.44155	6.62244	4.42246	1.01138	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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