TCONS_00057606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057606
Unique NameTCONS_00057606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057606 ID=TCONS_00057606|Name=TCONS_00057606|organism=Clytia hemisphaerica|type=transcript|length=546bp
ACACTGGTATCAAGTATGTTCCGCCAATGCCAGCAGCTTATTGTACACCA
GTATATAACAATACGAAAGACACAACAACACTTATTCTCTACTATCAGCT
CAAGCATGATAATCACGATTTTCAATTGATGAAAGTATTACCTGTTCTAC
AAGCAGAAAACTTCATATCGATTCCTGAGCTAGGACTGGCCGGACACGTT
TCAGCAGCATACGAGTGGAGAGAAGACAAACTTGCACAGAAGACGTTCTA
TAAAAGTGAACATTTCTCCATAAAGCACCTACTGGAACCATACATCATCC
AAATTGACAATGGTTTTGTGGTGACATCGAAAGAATTGCCACCTGAAACG
AAGATACATTCGCTAACTAAAGTAAGGAAATNCGAAGAACATGCAATCTT
CAAGCTGGTCAAAACAAACTTTACCATTGGATAACTAATCATTTCCCCTC
TGCAGCAAATGAATGGATCCGTAGTGGTCAAAACGTCATTGTTAAACCAA
TGGGAGACGCAATCATGTTGAAAGAGTGTATGAAAATCAAGGAAGC
Run BLAST on NCBI

protein sequence of TCONS_00057606-protein

>TCONS_00057606-protein ID=TCONS_00057606-protein|Name=TCONS_00057606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
TGIKYVPPMPAAYCTPVYNNTKDTTTLILYYQLKHDNHDFQLMKVLPVLQ
AENFISIPELGLAGHVSAAYEWREDKLAQKTFYKSEHFSIKHLLEPYIIQ
IDNGFVVTSKELPPETKIHSLTKVRKXEEHAIFKLVKTNFTIG
Run BLAST on NCBI

transcript from alignment at scaffold_293:261566..262111

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057606 ID=TCONS_00057606|Name=TCONS_00057606|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_293:261566..262111 (Clytia hemisphaerica)
GCTTCCTTGATTTTCATACACTCTTTCAACATGATTGCGTCTCCCATTGG
TTTAACAATGACGTTTTGACCACTACGGATCCATTCATTTGCTGCAGAGG
GGAAATGATTAGTTATCCAATGGTAAAGTTTGTTTTGACCAGCTTGAAGA
TTGCATGTTCTTCGNATTTCCTTACTTTAGTTAGCGAATGTATCTTCGTT
TCAGGTGGCAATTCTTTCGATGTCACCACAAAACCATTGTCAATTTGGAT
GATGTATGGTTCCAGTAGGTGCTTTATGGAGAAATGTTCACTTTTATAGA
ACGTCTTCTGTGCAAGTTTGTCTTCTCTCCACTCGTATGCTGCTGAAACG
TGTCCGGCCAGTCCTAGCTCAGGAATCGATATGAAGTTTTCTGCTTGTAG
AACAGGTAATACTTTCATCAATTGAAAATCGTGATTATCATGCTTGAGCT
GATAGTAGAGAATAAGTGTTGTTGTGTCTTTCGTATTGTTATATACTGGT
GTACAATAAGCTGCTGGCATTGGCGGAACATACTTGATACCAGTGT

Coding sequence (CDS) from alignment at scaffold_293:261566..262111

>TCONS_00057606 ID=TCONS_00057606|Name=TCONS_00057606|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_293:261566..262111 (Clytia hemisphaerica)
TTATCCAATGGTAAAGTTTGTTTTGACCAGCTTGAAGATTGCATGTTCTT
CGNATTTCCTTACTTTAGTTAGCGAATGTATCTTCGTTTCAGGTGGCAAT
TCTTTCGATGTCACCACAAAACCATTGTCAATTTGGATGATGTATGGTTC
CAGTAGGTGCTTTATGGAGAAATGTTCACTTTTATAGAACGTCTTCTGTG
CAAGTTTGTCTTCTCTCCACTCGTATGCTGCTGAAACGTGTCCGGCCAGT
CCTAGCTCAGGAATCGATATGAAGTTTTCTGCTTGTAGAACAGGTAATAC
TTTCATCAATTGAAAATCGTGATTATCATGCTTGAGCTGATAGTAGAGAA
TAAGTGTTGTTGTGTCTTTCGTATTGTTATATACTGGTGTACAATAAGCT
GCTGGCATTGGCGGAACATACTTGATACCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036332XLOC_036332Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057606-proteinTCONS_00057606-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057606-exon-scaffold_293-1491911889:261566..262111TCONS_00057606-exon-scaffold_293-1491911889:261566..262111Clytia hemisphaericaexon
TCONS_00057606-exon-scaffold_293-1510915933:261566..262111TCONS_00057606-exon-scaffold_293-1510915933:261566..262111Clytia hemisphaericaexon
TCONS_00057606-exon-scaffold_293-1575043694:261566..262111TCONS_00057606-exon-scaffold_293-1575043694:261566..262111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:261566..262111 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.324401	1.50792	2.27706	0.851817	0.560931	2.59852	2.90107	1.06839	1.11361	1.01332	1.89304	6.89729	4.98941	3.3395	8.33113	3.06475	3.40212	0	0.468422	2.17208	2.00269	1.14968	0.882303	3.12323	5.37675	0.155408	0.363576	0.116847	0.357147
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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