TCONS_00057612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057612
Unique NameTCONS_00057612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057612 ID=TCONS_00057612|Name=TCONS_00057612|organism=Clytia hemisphaerica|type=transcript|length=575bp
CGCAAtgatataaaattaaaaaagaactgCCACTAATAATCTTATCAAGA
AATCGTGAAAAAACAGAATTATGATTGCATGAATTCTACTGAACTTGCAG
GCTTCTACTTTCTTACATCCCTTATAATCCATGCACGTGAGAGATTAGAA
GAGTTCAGAAAAGAGTACGAAATGCGAGCCAGTTTGCTTGTAAACGTATG
GTTAACGTTGACTTTCTCCGTAGGATGTGTCAAAGGATCTTCAGAAACTG
ACAAATTAATACATCAAAATTCACAGACCTATGATATCATCACCAGTCAC
CTGCTAAAGAAACGAAGCGTAGACTACATTTCAGAAGGCTATCTATACGT
TAAACAGAAAAGCATTAGAACACTTATGAGAAGCCTGCGGTCTGTTGGCA
AAAGTGAAATCAAGTATTTAAGGAGTAAACGTGATACAGATGGGATGACA
TTTTATCCACAATCTTCTAATCCTCAAGACTATGTGATCGGACTAACCAT
TGCTGCATTGTTTATTGTGTTTGTTGCATCTTTCATTGTAATCTTTTATT
ATTGGGGCAATAGGTATTGTCCAAG
Run BLAST on NCBI

protein sequence of TCONS_00057612-protein

>TCONS_00057612-protein ID=TCONS_00057612-protein|Name=TCONS_00057612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MNSTELAGFYFLTSLIIHARERLEEFRKEYEMRASLLVNVWLTLTFSVGC
VKGSSETDKLIHQNSQTYDIITSHLLKKRSVDYISEGYLYVKQKSIRTLM
RSLRSVGKSEIKYLRSKRDTDGMTFYPQSSNPQDYVIGLTIAALFIVFVA
SFIVIFYYWGNRYCP
Run BLAST on NCBI

transcript from alignment at scaffold_294:109169..109743+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057612 ID=TCONS_00057612|Name=TCONS_00057612|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_294:109169..109743+ (Clytia hemisphaerica)
CGCAAtgatataaaattaaaaaagaactgCCACTAATAATCTTATCAAGA
AATCGTGAAAAAACAGAATTATGATTGCATGAATTCTACTGAACTTGCAG
GCTTCTACTTTCTTACATCCCTTATAATCCATGCACGTGAGAGATTAGAA
GAGTTCAGAAAAGAGTACGAAATGCGAGCCAGTTTGCTTGTAAACGTATG
GTTAACGTTGACTTTCTCCGTAGGATGTGTCAAAGGATCTTCAGAAACTG
ACAAATTAATACATCAAAATTCACAGACCTATGATATCATCACCAGTCAC
CTGCTAAAGAAACGAAGCGTAGACTACATTTCAGAAGGCTATCTATACGT
TAAACAGAAAAGCATTAGAACACTTATGAGAAGCCTGCGGTCTGTTGGCA
AAAGTGAAATCAAGTATTTAAGGAGTAAACGTGATACAGATGGGATGACA
TTTTATCCACAATCTTCTAATCCTCAAGACTATGTGATCGGACTAACCAT
TGCTGCATTGTTTATTGTGTTTGTTGCATCTTTCATTGTAATCTTTTATT
ATTGGGGCAATAGGTATTGTCCAAG

Coding sequence (CDS) from alignment at scaffold_294:109169..109743+

>TCONS_00057612 ID=TCONS_00057612|Name=TCONS_00057612|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_294:109169..109743+ (Clytia hemisphaerica)
ATGAATTCTACTGAACTTGCAGGCTTCTACTTTCTTACATCCCTTATAAT
CCATGCACGTGAGAGATTAGAAGAGTTCAGAAAAGAGTACGAAATGCGAG
CCAGTTTGCTTGTAAACGTATGGTTAACGTTGACTTTCTCCGTAGGATGT
GTCAAAGGATCTTCAGAAACTGACAAATTAATACATCAAAATTCACAGAC
CTATGATATCATCACCAGTCACCTGCTAAAGAAACGAAGCGTAGACTACA
TTTCAGAAGGCTATCTATACGTTAAACAGAAAAGCATTAGAACACTTATG
AGAAGCCTGCGGTCTGTTGGCAAAAGTGAAATCAAGTATTTAAGGAGTAA
ACGTGATACAGATGGGATGACATTTTATCCACAATCTTCTAATCCTCAAG
ACTATGTGATCGGACTAACCATTGCTGCATTGTTTATTGTGTTTGTTGCA
TCTTTCATTGTAATCTTTTATTATTGGGGCAATAGGTATTGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036336XLOC_036336Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057612-proteinTCONS_00057612-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057612-exon-scaffold_294-1491911889:109169..109743TCONS_00057612-exon-scaffold_294-1491911889:109169..109743Clytia hemisphaericaexon
TCONS_00057612-exon-scaffold_294-1510915933:109169..109743TCONS_00057612-exon-scaffold_294-1510915933:109169..109743Clytia hemisphaericaexon
TCONS_00057612-exon-scaffold_294-1575043694:109169..109743TCONS_00057612-exon-scaffold_294-1575043694:109169..109743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:109169..109743 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03561	1.73197	0.917854	1.60407	0	0	0.212735	0	0	0	0	0	0.193403	0	0	0	2.52863	2.53704	0	0	1.7897	1.06471	1.97654	2.52611	0	0	0	0.141851	0.860711	1.31539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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