TCONS_00057623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057623
Unique NameTCONS_00057623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057623 ID=TCONS_00057623|Name=TCONS_00057623|organism=Clytia hemisphaerica|type=transcript|length=284bp
ATCCTCAAAGAATCTTATTATATATTTAGCAGATCCCTTGCATTAAATGT
CCAAACAATTTTACCCTCAGATCTCGATTCAGGGTAGTTTTGAGGACGTT
TTGGGGGTGTGGGTCCTTTCGGAGCCCCATACTCCTACCTAGTGGCTAGC
TTATACAGTATCTACAGGCACATACATGTTAGGAGTAAaggctgtcctcc
ttacagtccacGCTCATAAGGTTGAGNCAGGCACATACATGTTAGGAGTA
AaggctgtcctccttacagtccacGCTCATAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_294:91123..91406

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057623 ID=TCONS_00057623|Name=TCONS_00057623|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at scaffold_294:91123..91406 (Clytia hemisphaerica)
CCTTATGAGCgtggactgtaaggaggacagcctTTACTCCTAACATGTAT
GTGCCTGNCTCAACCTTATGAGCgtggactgtaaggaggacagcctTTAC
TCCTAACATGTATGTGCCTGTAGATACTGTATAAGCTAGCCACTAGGTAG
GAGTATGGGGCTCCGAAAGGACCCACACCCCCAAAACGTCCTCAAAACTA
CCCTGAATCGAGATCTGAGGGTAAAATTGTTTGGACATTTAATGCAAGGG
ATCTGCTAAATATATAATAAGATTCTTTGAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036341XLOC_036341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057623-exon-scaffold_294-1491911889:91123..91406TCONS_00057623-exon-scaffold_294-1491911889:91123..91406Clytia hemisphaericaexon
TCONS_00057623-exon-scaffold_294-1510915933:91123..91406TCONS_00057623-exon-scaffold_294-1510915933:91123..91406Clytia hemisphaericaexon
TCONS_00057623-exon-scaffold_294-1575043694:91123..91406TCONS_00057623-exon-scaffold_294-1575043694:91123..91406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_294supercontigscaffold_294:91123..91406 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08005	0.915835	0	0	14.9897	9.10892	8.00393	14.6587	4.3869	4.03769	1.60772	2.13677	2.8716	3.17312	1.06658	0.729598	0	0	0	0	0.545352	1.32873	0	0.489497	6.87161	12.4576	0.751637	0.771641	0.557937	0.646848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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