TCONS_00057634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057634
Unique NameTCONS_00057634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057634 ID=TCONS_00057634|Name=TCONS_00057634|organism=Clytia hemisphaerica|type=transcript|length=790bp
gtcaaaataattatattttcttgcttttcttcatttattttcattgcatt
tcactttatttttggtttctatattttatttctttttgtgcTACTGTTTA
TAGCTCAGAACTGATACACATTCCATACACAGCTGTCCAAAACGATGAAA
TCTGTAGCAATCTTTCTGGTTATCTGTCTCACCATTCGTCAAATTGAATG
TGGCTCAGAACCAGGTCCACCAGGGCCACCAGGACCTCCCGGTATGCCTG
CCGCTCCAGCGCCTTGTACAGGGGAATGTAAGTGAAAAATCTCATTATTG
CATGATTTTTATGTTAACATTTTTTTAGAAGTAGTattagtaaaaatatt
tcagcaGTATGAAGATCTTAGCAATCATTATGGCTCTTACCCTTATGATT
TTTGGATTAATTGAATGTGGGGAGATGGGTCCACCAGGACCTCGGGGACC
ACCCGGGCCACCGGGAGCGCCAGCTCCTTGTACTGGGGAATGTAAGTAAT
ACTTTTCGAGGAGTTaatttaatgaaattgaatCTCCAAAAATAGGGGAG
GGGCTTACtactctttataagaacatgcatGAATATGTACAGTTGAGTCT
CTCTTCTCGCGTTTCTCTGCACAATTAAGAGTGCTTGAGTAGAGCTTGTT
ACATAAAAATTTgtgtatttcttctcaatatTTTCTTGCTTACGCATTGA
TCATTTGATTAGAAAGTTaaatctctataactcgaacacgcacggagaAC
ACAAACTTGGTCAgatttaaggaaatttcgagttgaagag
Run BLAST on NCBI

transcript from alignment at scaffold_295:8416..9205+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057634 ID=TCONS_00057634|Name=TCONS_00057634|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at scaffold_295:8416..9205+ (Clytia hemisphaerica)
gtcaaaataattatattttcttgcttttcttcatttattttcattgcatt
tcactttatttttggtttctatattttatttctttttgtgcTACTGTTTA
TAGCTCAGAACTGATACACATTCCATACACAGCTGTCCAAAACGATGAAA
TCTGTAGCAATCTTTCTGGTTATCTGTCTCACCATTCGTCAAATTGAATG
TGGCTCAGAACCAGGTCCACCAGGGCCACCAGGACCTCCCGGTATGCCTG
CCGCTCCAGCGCCTTGTACAGGGGAATGTAAGTGAAAAATCTCATTATTG
CATGATTTTTATGTTAACATTTTTTTAGAAGTAGTattagtaaaaatatt
tcagcaGTATGAAGATCTTAGCAATCATTATGGCTCTTACCCTTATGATT
TTTGGATTAATTGAATGTGGGGAGATGGGTCCACCAGGACCTCGGGGACC
ACCCGGGCCACCGGGAGCGCCAGCTCCTTGTACTGGGGAATGTAAGTAAT
ACTTTTCGAGGAGTTaatttaatgaaattgaatCTCCAAAAATAGGGGAG
GGGCTTACtactctttataagaacatgcatGAATATGTACAGTTGAGTCT
CTCTTCTCGCGTTTCTCTGCACAATTAAGAGTGCTTGAGTAGAGCTTGTT
ACATAAAAATTTgtgtatttcttctcaatatTTTCTTGCTTACGCATTGA
TCATTTGATTAGAAAGTTaaatctctataactcgaacacgcacggagaAC
ACAAACTTGGTCAgatttaaggaaatttcgagttgaagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036351XLOC_036351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057634-exon-scaffold_295-1491911889:8416..9205TCONS_00057634-exon-scaffold_295-1491911889:8416..9205Clytia hemisphaericaexon
TCONS_00057634-exon-scaffold_295-1510915933:8416..9205TCONS_00057634-exon-scaffold_295-1510915933:8416..9205Clytia hemisphaericaexon
TCONS_00057634-exon-scaffold_295-1575043694:8416..9205TCONS_00057634-exon-scaffold_295-1575043694:8416..9205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:8416..9205 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.150467	0.202925	3.21203	2.40608	9.61432	13.4454	7.72802	5.14521	26.9062	23.6139	18.8008	16.2932	18.3619	40.1781	29.5072	20.638	0	0	12.9682	13.3069	14.1068	12.4135	8.33491	5.43832	2.4895	1.49608	0.028648	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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