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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057635 ID=TCONS_00057635|Name=TCONS_00057635|organism=Clytia hemisphaerica|type=transcript|length=1719bp
tttctttttgtgcTACTGTTTATAGCTCAGAACTGATACACATTCCATAC
ACAGCTGTCCAAAACGATGAAATCTGTAGCAATCTTTCTGGTTATCTGTC
TCACCATTCGTCAAATTGAATGTGGCTCAGAACCAGGTCCACCAGGGCCA
CCAGGACCTCCCGGTATGCCTGCCGCTCCAGCGCCTTGTACAGGGGAATG
TAAGTGAAAAATCTCATTATTGCATGATTTTTATGTTAACATTTTTTTAG
AAGTAGTattagtaaaaatatttcagcaGTATGAAGATCTTAGCAATCAT
TATGGCTCTTACCCTTATGATTTTTGGATTAATTGAATGTGGGGAGATGG
GTCCACCAGGACCTCGGGGACCACCCGGGCCACCGGGAGCGCCAGCTCCT
TGTACTGGGGAATGTGTTGGTCTTGGATGTGAACCAGCTTGTTTGGTTGG
TTGCTGTGGTTACCATGGCAGGTATGGAAAGTCTGGTAAATGGATCCGAA
GTGTTTTGGAGAAATATGTCGATGAAGAAGATTGAAATTAGCATTGCTTA
GATTTTATGAagaattttagatattttttaatttaatatgaCGTGGCCAG
GTACTAggttaaaactttcaaaaaactgaaaacatAAGATAGAAAAAAGC
TTGTTTTCCTAATATACTATAAATTCATCCAAGTTTTTAATGCTACTAAg
attgaatgattattttttattttcaaggatTGACAcccaatattttcatt
ttgtagataattttgataaaaaggtgGAAATATTTAAAGACACATGACAA
AATAATATTAATCTAGTTACAATTCTAGATATCATCCGGATGTAAAGCCT
TATCTACACCAAAGAATATAACTTCAGCGTTGTATCATAGGTCGTCTTCA
TAATTTCCTTGGTCGTTTCGCAACTGCTGTAAATTCTTGAGAAAGAAAAT
atggaaatttaaaatttaatttcaaaagctCAGATAAGatggaaaataga
caaaaaatttgttttttgacaGGGCCCGTTATTGATGCGTGAGCGACAGG
AGTTTGTATGGTCTTGATCTAATTGATGATTCGTCATCTTTTTAAGATAG
AATGTGAATGTGGTACTCTTGAAAATACTGGGGTGATGGTTTCTACAATG
ATGCAAGGGTGTTATACACTCTTCATTATAAAGGTTGCTCTTGATCTCTG
AAACAGGGGTGTTGTTAGATCTACGAGACAGGGGTTCTACTTCAAACCTA
CGGGACAGTTGTTTTGCTTTTAGATCTACAAGACAGGGGTGTTGTATTAC
CTTCAatcgagacaggggtgttactCTAGACCTACGATACCAGTGTTGCT
TTAAATCAACAAGACAGGAGTGTTGCTTTAGTTCAACGAAACAGGGGTTT
TACTTTCAGACCttcgagacaggggtgtttgatTACCTTCAATGGAGACT
TGGTCATCACCATCATCACTAGCAACAGCGATCATATCCTTGATGGCGCT
GTCACTGATCTGATAATTCATTGCTTGGAAGCCAGCCTTCAAATCTTTGA
ACGTCAAATAACCTTTGTTTCCTTGATCAAGTTTCTAATGATATCGGAAA
GAAAGTCAATGGTGGAAATTATGCTACGATAAGATAAAAACTCATTAAGA
ATGAAGGCGAACATTGTTATTATATATTCTTCAAGGTTCTAAACGTTAAA
CAAAATGGTCTTCCTTTCG Run BLAST on NCBI transcript from alignment at scaffold_295:8494..11050+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057635 ID=TCONS_00057635|Name=TCONS_00057635|organism=Clytia hemisphaerica|type=transcript|length=2557bp|location=Sequence derived from alignment at scaffold_295:8494..11050+ (Clytia hemisphaerica)
tttctttttgtgcTACTGTTTATAGCTCAGAACTGATACACATTCCATAC
ACAGCTGTCCAAAACGATGAAATCTGTAGCAATCTTTCTGGTTATCTGTC
TCACCATTCGTCAAATTGAATGTGGCTCAGAACCAGGTCCACCAGGGCCA
CCAGGACCTCCCGGTATGCCTGCCGCTCCAGCGCCTTGTACAGGGGAATG
TAAGTGAAAAATCTCATTATTGCATGATTTTTATGTTAACATTTTTTTAG
AAGTAGTattagtaaaaatatttcagcaGTATGAAGATCTTAGCAATCAT
TATGGCTCTTACCCTTATGATTTTTGGATTAATTGAATGTGGGGAGATGG
GTCCACCAGGACCTCGGGGACCACCCGGGCCACCGGGAGCGCCAGCTCCT
TGTACTGGGGAATGTAAGTAATACTTTTCGAGGAGTTaatttaatgaaat
tgaatCTCCAAAAATAGGGGAGGGGCTTACtactctttataagaacatgc
atGAATATGTACAGTTGAGTCTCTCTTCTCGCGTTTCTCTGCACAATTAA
GAGTGCTTGAGTAGAGCTTGTTACATAAAAATTTgtgtatttcttctcaa
tatTTTCTTGCTTACGCATTGATCATTTGATTAGAAAGTTaaatctctat
aactcgaacacgcacggagaACACAAACTTGGTCAgatttaaggaaattt
cgagttgaagaggttcgagttaaagaaattcCACTGTAATTCTTAGCTCT
CTTTTTCAAAGCCCTGTGATCATCTAAAGAATTTACAGTCAGTTTTGAAC
ATTTTAGATACAGGAAAGTTTTCATGatttgaacctctataactcgaatg
tctctttaactcgaacaagtttttctcgtcccttcagttaacaatgcctc
atAAACTCATAAACGTTACTCCAtacataactcgaaatttcctaaACTCA
AACAATTTTGCGTTTGCGTTTTGTATGACCTAAAGCAATAACTTGTAAGA
AAGATACTTTCTAATTTACGGTTTTTGATGTTAAAGGCGTATATTTCGGA
AAATCTGAAAACGAAGacgaaaaaagtgaaacatttttaactcgACTTAA
TTCAGCCTTTTTTTCGAACTTTGAATCTCGctgatttatgatttttattc
aGATTTTTCCAACTATcttttttagatcaaaagtcATAGCCCACCCAAAA
TTGTCCAAATCAGTTTATGTTGActtcaaaattttacttttcctTCCACA
GGTGTTGGTCTTGGATGTGAACCAGCTTGTTTGGTTGGTTGCTGTGGTTA
CCATGGCAGGTATGGAAAGTCTGGTAAATGGATCCGAAGTGTTTTGGAGA
AATATGTCGATGAAGAAGATTGAAATTAGCATTGCTTAGATTTTATGAag
aattttagatattttttaatttaatatgaCGTGGCCAGGTACTAggttaa
aactttcaaaaaactgaaaacatAAGATAGAAAAAAGCTTGTTTTCCTAA
TATACTATAAATTCATCCAAGTTTTTAATGCTACTAAgattgaatgatta
ttttttattttcaaggatTGACAcccaatattttcattttgtagataatt
ttgataaaaaggtgGAAATATTTAAAGACACATGACAAAATAATATTAAT
CTAGTTACAATTCTAGATATCATCCGGATGTAAAGCCTTATCTACACCAA
AGAATATAACTTCAGCGTTGTATCATAGGTCGTCTTCATAATTTCCTTGG
TCGTTTCGCAACTGCTGTAAATTCTTGAGAAAGAAAATatggaaatttaa
aatttaatttcaaaagctCAGATAAGatggaaaatagacaaaaaatttgt
tttttgacaGGGCCCGTTATTGATGCGTGAGCGACAGGAGTTTGTATGGT
CTTGATCTAATTGATGATTCGTCATCTTTTTAAGATAGAATGTGAATGTG
GTACTCTTGAAAATACTGGGGTGATGGTTTCTACAATGATGCAAGGGTGT
TATACACTCTTCATTATAAAGGTTGCTCTTGATCTCTGAAACAGGGGTGT
TGTTAGATCTACGAGACAGGGGTTCTACTTCAAACCTACGGGACAGTTGT
TTTGCTTTTAGATCTACAAGACAGGGGTGTTGTATTACCTTCAatcgaga
caggggtgttactCTAGACCTACGATACCAGTGTTGCTTTAAATCAACAA
GACAGGAGTGTTGCTTTAGTTCAACGAAACAGGGGTTTTACTTTCAGACC
ttcgagacaggggtgtttgatTACCTTCAATGGAGACTTGGTCATCACCA
TCATCACTAGCAACAGCGATCATATCCTTGATGGCGCTGTCACTGATCTG
ATAATTCATTGCTTGGAAGCCAGCCTTCAAATCTTTGAACGTCAAATAAC
CTTTGTTTCCTTGATCAAGTTTCTAATGATATCGGAAAGAAAGTCAATGG
TGGAAATTATGCTACGATAAGATAAAAACTCATTAAGAATGAAGGCGAAC
ATTGTTATTATATATTCTTCAAGGTTCTAAACGTTAAACAAAATGGTCTT
CCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057635-exon-scaffold_295-1491911889:8494..8906 | TCONS_00057635-exon-scaffold_295-1491911889:8494..8906 | Clytia hemisphaerica | exon |
| TCONS_00057635-exon-scaffold_295-1510915933:8494..8906 | TCONS_00057635-exon-scaffold_295-1510915933:8494..8906 | Clytia hemisphaerica | exon |
| TCONS_00057635-exon-scaffold_295-1575043694:8494..8906 | TCONS_00057635-exon-scaffold_295-1575043694:8494..8906 | Clytia hemisphaerica | exon |
| TCONS_00057635-exon-scaffold_295-1491911889:9745..11050 | TCONS_00057635-exon-scaffold_295-1491911889:9745..11050 | Clytia hemisphaerica | exon |
| TCONS_00057635-exon-scaffold_295-1510915933:9745..11050 | TCONS_00057635-exon-scaffold_295-1510915933:9745..11050 | Clytia hemisphaerica | exon |
| TCONS_00057635-exon-scaffold_295-1575043694:9745..11050 | TCONS_00057635-exon-scaffold_295-1575043694:9745..11050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_295 | supercontig | scaffold_295:8494..11050 + |
Blast
The following BLAST results are available for this feature:
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