|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057655 ID=TCONS_00057655|Name=TCONS_00057655|organism=Clytia hemisphaerica|type=transcript|length=2147bp
GTAAAGAAATCATTCATGATGTGGAATACAATGTTCATCAGAaagatttt
tcatgttttgcaAGTTTTCATGTTCATTTTTATAATCGTTGTTAATGTGT
CGTTTATTTTCCGTCGTTCTACAGAATCAGACATTAAATTGGCGTCAACA
GAGTCATTGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCTGAT
GGTCAATGGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACGCAG
ATGTCGTCAAAAGTCTTAGAAACCCAGgtTTTGCTGGAATACACGACATT
GAGAAGTATTTCAAGTCAATCAATTTGAAACTTGGTCAGAAACGAGTAGG
GAAAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAAAGCTT
ATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaatttca
gaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGACGATAA
TTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGGACTTTACAGGCGAAG
TTAAAGACGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCTACTATCCT
AAGAATCTGGATAATTTGCCAAGACTTTTTGGTGATGAACAAGATCGAGT
CCGCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTATTATTACT
GTAAAGATATGGCGCAATATTTTGTTCAGCTTGAAGATGATATAATTGCT
GTTGATGATTATATGGGGAAAATGCGGGAATTTATAACGAAAAACGAGAA
ACTTCGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTATCGGAATGA
CTTATCGGGGAGAACATCTAGAATCGTTGGCAAAGTTTACCAGATATTTC
TTTTGGACCATGCCAGTCGACTGGCTTTTTCGAGTTTATAACAATAtctt
tttatatcaaaatccTAAGAGCTTTCGTACAAGCGAACCTTTGTTCTTAC
ATATCGGAAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAAATCTTATA
GATCTGCCACTGGTCGGGAGACGTCGATTTCAATTGAGAAACGGAAATCC
ACCAGCTATCATCAAGTCTGACTTGAAAGACTTTTATATGAAGAATTTCT
TAGAAAACCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAACACCTCAC
AATGGAGATACTATTACAATTATGTTTAATTCGactcaaaaagtcaaaag
aatTGTTTTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAGCTTCTATG
AAACTGAATTATACATCTCTCAAATGAGAGGTAATGCGAATTCGAAATGT
GGGAAGTTTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTTGATATTAC
TTTTGATGAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGAGTTGACAA
CTGTCAAGAAAACGAAAGGAATTCCAAACTGGTTGATTATTGAAGAAATT
GCTATTCTTATTAGTTGATTTACAATATTTATATACTAAGTGTATAACTA
CTATGTTTCGTCCTTTGGGCTTAGAATTCAATCTTATTACcctcccccac
catccaaagggctttatTGTGCacatcataagccctttgggTAGTAAAGG
GGAAACTATAGACTGGTTTAATCccaaagaacgaaaaattgcCCTTTAAG
ACCGATCAAAACTCGAAAAATCGCATATTtcatgttttgtgacgtcattt
gggcccTACATTACGTCATTGAAAGGGTAATAAATTCTttacttcactga
aatcaatttgtcatttaccCAAAAGATTCTCTCAATGACTTCCGATCCAA
TGCGGGGTCAtccattgcttaaatccttctcaaactcgaaatattgtatt
tttcaggttttgataACGTCATTGGACCCAAAATGTCTCAATTTGGATAT
ATCATTTTTCgaaagtttctatatacccACTCTGACCCCTCCAATTTATT
CTCTATTAAATTCTAGATCCAATGAGGgttcaacgacctcccaaccgCTA
TTCAATCGCGCGATATCAcaattttcctgttttgatgacgtcttcaactg
aaaacgcctgaaaatttagtcaaattataaagtcacactcaagcctt Run BLAST on NCBI transcript from alignment at scaffold_297:92459..96813+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057655 ID=TCONS_00057655|Name=TCONS_00057655|organism=Clytia hemisphaerica|type=transcript|length=4355bp|location=Sequence derived from alignment at scaffold_297:92459..96813+ (Clytia hemisphaerica)
GTAAAGAAATCATTCATGATGTGGAATACAATGTTCATCAGAaagatttt
tcatgttttgcaAGTTTTCATGTTCATTTTTATAATCGTTGTTAATGTGT
CGTTTATTTTCCGTCGTTCTACAGAATCAGGTATGATCCACTTTCTAATA
TTGCAATAATTGCCCTTAATCATCCATACAAAATACTGTATCTGTACCCA
GGGGCTGACCTGGACGGCCGACGGAGAcatgccgctggagtttgaaaaat
tgactCTGTCAAACATTTAGAtatgaatcaaaaattttctcccaCTCAAT
TTATTCTCCTATGTCAAATCTGCATCTTGAAAGTAATTAAGTTTAATATC
ATGCCAGAATATCTTCACATCCCTGCATCACTGCATCTGCATGACAATAT
AACTAAACCATTAGTTAGCTCAGGCCGTAAGACAGTTCAACGGCGATGCA
AAAAAGAGTCTCAATCTAGCCAATATACCAAACAGAtttctaatttcaaa
aaaatgtttaactcAATTCAGCTTTAGCTTCGAACCCAAACTCCTTCTCA
TATAAATTATAATCCAAGTAAGTCTTTCATGAATGTTTTTGGATTGCTTT
CTAGCGTAATGATAGATATCTCTAGGCGGGTTTTCTCATTAATGACTTGT
TTTTTATCAACACTTGATCTCACTTAATTTAAGACATTAAATTGGCGTCA
ACAGAGTCATTGATGAATGAAGTACGGGTCAGCAACCGATCTTCGAATCT
GATGGTCAATGGGGATGTCATGAAGATATCCAAAGATTGGATGAAAAACG
CAGATGTCGTCAAAAGTCTTAGAAACCCAGGTCTAGTTCACTATAATTAC
TactatattttaaaattatcatgAAATGTCATTGAAAACAACCCtctgtc
acagacccgctgggaccccagccctactggaaaatttgggaagAATTTCG
tacccggtgggaaaataccctagaatttcagccccactgggaaactgact
tttatttcatccctattcaaaaaaattcagtatttcaaaattgcacttaa
aaaccatccccactaaattttttaaccttggaacaatagaatttctatac
ctattgggattttgatagaaattttgatTCCCGatgagaaaaaagttcca
ccggggctgttaGACAgggtatttgaaaatattaaagtgAAACCTTTCAA
GTAACGAAGTCAACTTTTCAAGCGGTTGCTTTCCTGGCTATTACATAAAC
CTATCATCAATATTGTTGTTGATTTTTCGGAATAAAGGAGTCAACAAATG
ATCATATTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCTTCT
AGGTACACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTCTAC
TCAGGACCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCTTAA
ACTATTTGATATTGTAACCTTCTAatatgattttcttttcttttcaaaag
gtTTTGCTGGAATACACGACATTGAGAAGTATTTCAAGTCAATCAATTTG
AAACTTGGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACAAAT
ATTTATCCAGTCACTTCAATCTTTCCCAAAGGCCAAACTTCAATGCAGGC
AGCCTATCAAGGAAATGCACGGACGAATCCTTATGTATCCTATGAATTTC
TATCTTTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAGTAA
AGCTTATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatgaaaa
tttcagaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTTGAC
GATAATTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGANAATTGCACt
taaaaaccatccccactaaattttttaaccttggaacaatagaatttcta
tacctattgggattttgatagaaattttgatTCCCGatgagaaaaaagtt
ccaccggggctgttaGACAgggtatttgaaaatattaaagtgAAACCTTT
CAAGTAACGAAGTCAACTTTTCAAGCGGTTGCTTTCCTGGCTATTACATA
AACCTATCATCAATATTGTTGTTGATTTTTCGGAATAAAGGAGTCAACAA
ATGATCATATTCATCTAAATCTGAGGTTCGGGACTTAAAAGTAAAATCCT
TCTAGGTACACCTCCAAATGTAGATTGTAGACATATAAGACAAAACATTC
TACTCAGGACCATATAGAAGGAATCCTAACTTGATAAATATTCAATACCT
TAAACTATTTGATATTGTAACCTTCTAatatgattttcttttcttttcaa
aaggtTTTGCTGGAATACACGACATTGAGAAGTATTTCAAGTCAATCAAT
TTGAAACTTGGTCAGAAACGAGTAGGGAAAGGTAAAATTATCTCCATACA
AATATTTATCCAGTCACTTCAATCTTTCCCAAAGGCCAAACTTCAATGCA
GGCAGCCTATCAAGGAAATGCACGGACGAATCCTTATGTATCCTATGAAT
TTCTATCTTTCAGCTTTCGTTGTTTTTGGGATTCCAACCGTCAAGAGAAG
TAAAGCTTATTACGTCATCCAAACGGTATCTTCCTTGCTCAAACacatga
aaatttcagaaaggaAAAATGTTGTCATCGTCATTTTTGTGGCAGATCTT
GACGATAATTTTCTTAGGAAAGTCGTAAAAGATGTTCGACAGGACTTTAC
AGGCGAAGTTAAAGACGGTATCATTCAAGTGGTTGCTCCTGATAAAGCCT
ACTATCCTAAGAATCTGGATAATTTGCCAAGACTTTTTGGTGATGAACAA
GATCGAGTCCGCTGGAGATCGAAGCAGTGCCTCGATTATTCATATTTGTA
TTATTACTGTAAAGATATGGCGCAATATTTTGTTCAGCTTGAAGATGATA
TAATTGCTGTTGATGATTATATGGGGAAAATGCGGGAATTTATAACGAAA
AACGAGAAACTTCGTTGGTCGGTCCTTGAGTTCGGTGCCCGAGGATTTAT
CGGAATGACTTATCGGGGAGAACATCTAGAATCGTTGGCAAAGTTTACCA
GATATTTCTTTTGGACCATGCCAGTCGACTGGCTTTTTCGAGTTTATAAC
AATAtctttttatatcaaaatccTAAGAGCTTTCGTACAAGCGAACCTTT
GTTCTTACATATCGGAAAGTTCTCTTCCTTAGATGGCCAAACGAGGTCAA
ATCTTATAGATCTGCCACTGGTCGGGAGACGTCGATTTCAATTGAGAAAC
GGAAATCCACCAGCTATCATCAAGTCTGACTTGAAAGACTTTTATATGAA
GAATTTCTTAGAAAACCCATATTCCAAAAAAGGGGCGATGTGGAGTAAAA
CACCTCACAATGGAGATACTATTACAATTATGTTTAATTCGactcaaaaa
gtcaaaagaatTGTTTTCGTCAGTGGGTTAGAAGATTATAAAAAAGACAG
CTTCTATGAAACTGAATTATACATCTCTCAAATGAGAGGTAATGCGAATT
CGAAATGTGGGAAGTTTGAGCTGGTGAAATTTTACAAAGAAGCAATAGTT
GATATTACTTTTGATGAACCTAAAGAAAACGTTTGGTGTGTCAAACTGGA
GTTGACAACTGTCAAGAAAACGAAAGGAATTCCAAACTGGTTGATTATTG
AAGAAATTGCTATTCTTATTAGTTGATTTACAATATTTATATACTAAGTG
TATAACTACTATGTTTCGTCCTTTGGGCTTAGAATTCAATCTTATTACcc
tcccccaccatccaaagggctttatTGTGCacatcataagccctttgggT
AGTAAAGGGGAAACTATAGACTGGTTTAATCccaaagaacgaaaaattgc
CCTTTAAGACCGATCAAAACTCGAAAAATCGCATATTtcatgttttgtga
cgtcatttgggcccTACATTACGTCATTGAAAGGGTAATAAATTCTttac
ttcactgaaatcaatttgtcatttaccCAAAAGATTCTCTCAATGACTTC
CGATCCAATGCGGGGTCAtccattgcttaaatccttctcaaactcgaaat
attgtatttttcaggttttgataACGTCATTGGACCCAAAATGTCTCAAT
TTGGATATATCATTTTTCgaaagtttctatatacccACTCTGACCCCTCC
AATTTATTCTCTATTAAATTCTAGATCCAATGAGGgttcaacgacctccc
aaccgCTATTCAATCGCGCGATATCAcaattttcctgttttgatgacgtc
ttcaactgaaaacgcctgaaaatttagtcaaattataaagtcacactcaa
gcctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057655-exon-scaffold_297-1491911889:92459..92588 | TCONS_00057655-exon-scaffold_297-1491911889:92459..92588 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1510915933:92459..92588 | TCONS_00057655-exon-scaffold_297-1510915933:92459..92588 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1575043694:92459..92588 | TCONS_00057655-exon-scaffold_297-1575043694:92459..92588 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1491911889:93142..93288 | TCONS_00057655-exon-scaffold_297-1491911889:93142..93288 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1510915933:93142..93288 | TCONS_00057655-exon-scaffold_297-1510915933:93142..93288 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1575043694:93142..93288 | TCONS_00057655-exon-scaffold_297-1575043694:93142..93288 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1491911889:94812..94889 | TCONS_00057655-exon-scaffold_297-1491911889:94812..94889 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1510915933:94812..94889 | TCONS_00057655-exon-scaffold_297-1510915933:94812..94889 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1575043694:94812..94889 | TCONS_00057655-exon-scaffold_297-1575043694:94812..94889 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1491911889:95022..96813 | TCONS_00057655-exon-scaffold_297-1491911889:95022..96813 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1510915933:95022..96813 | TCONS_00057655-exon-scaffold_297-1510915933:95022..96813 | Clytia hemisphaerica | exon |
| TCONS_00057655-exon-scaffold_297-1575043694:95022..96813 | TCONS_00057655-exon-scaffold_297-1575043694:95022..96813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:92459..96813 + |
Blast
BLAST of TCONS_00057655 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 6.295e-53 Identity = 114/348 (32.76%), Postives = 190/348 (54.60%), Query Frame = 1
Query: 325 LKLGQKRVGKAFVVFGIPTVKRSKAYYVIQTVSSLLKHMKISERKNVVIVIFVADLDDNFLRKVVKDVRQDFTGEVKDGIIQVVAPDKAYYPKNLDNLPRLFGDEQDRVRWRSKQCLDYSYLYYYCKDMAQYFVQLEDDIIAVDDYMGKMREFITKNEKLRWSVLEFGARGFIGMTYRGEHLESLAKFTRYFFWTMPVDWLFRVYNNIFLYQ--NPKS---------------FRTSEPLFLHIGKFSSLDGQTRSNLIDLPLVGRRRFQLRNGNPPAIIKSDLKDFYMKNFLENPYSKKGAMWSKTPHNGDTITIMFNSTQKVKRIVFVSGLEDYKKDSFYETELYI 1317
+++G R G + +V GIPTVKR Y+I+T+ SL+ ++ E+ + VIV+F+ + D +++ VV ++ ++F+ E+ G+++V++P ++YYP +L NL FGD ++RVRWR+KQ LDY +L Y ++ Y++QLEDDII +Y ++ F + W +LEF GFIG ++ L + +F F+ P+DWL ++I + NP+ FR S LF H+G SSL G+ + L D + ++ + NPPA + + LK Y + LE Y + W+ TP GD I F+ V+ +F SG +++ D T + +
Sbjct: 126 VQIGNGRTGVS-IVMGIPTVKREVKSYLIETLHSLIDNLYPEEKLDCVIVVFIGETDIDYVHGVVANLEKEFSKEISSGLVEVISPPESYYP-DLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLL---DHILWVKVCNPEKDAKHCDRQKANLRIRFRPS--LFQHVGLHSSLSGKIQ-KLTDKDYMKPLLLKI-HVNPPAEVSTSLK-VYQGHTLEKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVEV 463
The following BLAST results are available for this feature:
|
