TCONS_00057678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057678
Unique NameTCONS_00057678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057678 ID=TCONS_00057678|Name=TCONS_00057678|organism=Clytia hemisphaerica|type=transcript|length=1504bp
ATAGTAGTAAAAGTCGAAGATACGGTGGCAAAAAATCACCTCATTTTAAT
AAAGGACGTAGTTTAGAAAGTAGCGGCTTTGAAGAAGAAACGAACAATAT
CAAATGCCCGTTCGGTAAAAATTGTTCACTCGGTCATAAAAATGGTCGCC
ACGTATACCCGGTTGAAAATAATGACAGGTTAAGCATTCGGAAGGGAAGC
GAGGCAAGTTCTATGATGAGGTCTTGCTCACCCACATCAACTTATTTTAC
CCATGAACATTTTGATTATTTGGTACAACAAATGACGTATTTAAGGGCAG
AGCTCAAAGAAGAGTTTCAACAGTCTATCACCAGAgaacaaaaaatgaaa
gaacatTTCGAATCACAACTCGATGATATGAAAAAAACCATGACGACGGA
CTACATGGGTTGGATCGCCAACGAAATGAAACAACTCAAAACTAAATTAC
ACGAAAAAGACGAAGAAATTCGGAGGCTCCGTGACATTATTGCTGAAAAC
GAAGCCCAAGCATCCAAAACAAAGCGACGTGAATCCTTTGGGACGCCCgt
ttagtttagttttcttGACGTTTACAGTATGTCCGGAAAAAGCGGGACAG
AATTTGTACAGTTggcactctctaattcgatttttaaataaaGGGAATTT
GATTTTGATCAAATAAGGTAGTGTATTGAAAAGAagaacgtcgtttatga
gatTTCCTTGTTGAAAATTTACTGATACAAAATCTGTCCCGCTTTTTTCC
AGACATACTGTATTTTATTTATACAAACATCATTACGTAAATTGGTGGAC
ATTCTCAAACATCCAGTATAGATTACCAGCTGTAAATTACTTTCAGAATC
GTTTTATTCTTCCATATAACTGAATTTCAAGTCAATTCGCTTTAAATGTG
CACTGTTGTATAGTTCTGTTTTCAGTCGTTTTTTGCTTTCCATTTTTCAC
TGAGTGTTTCGATTACATACCGTTGAAAAAGATAATTCAAAGGACTTATT
TGGGGAATTATGCTTAAAaggattttgttttttcataactttccacaaat
ttaaatttagtagtgaagttaagtaaatcggtaaaatcacgacaacgaac
gaaaatttaacaggctagttagcgagtttcaaccaatcaaatttcgtatt
ttcactagcctattacatttttcgtctgtcgtcgtgattatcctggtatg
cttaacaTCAGTAATATGTTTAGATTAGAATAGGTCTGAGAATGTATGAG
GTTGCgtacttttttatatattttttttcattaaatttaatcaccctgac
cacccatatTTACACAGATTATTTTATCATGCTATTTCATAGACCAAAAC
AGATAATTTTCTAGACTTTTTtatattaatttatttttttcgacaGGATT
CTAAGGGGACTTTATTTCACATTTATTTAGAAacgttttcttagaaaaaa
aatattttctatgaCAATATTATTATATGATCATTTTAAATAATAATCCT
TGAG
Run BLAST on NCBI

transcript from alignment at scaffold_297:46529..48899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057678 ID=TCONS_00057678|Name=TCONS_00057678|organism=Clytia hemisphaerica|type=transcript|length=2371bp|location=Sequence derived from alignment at scaffold_297:46529..48899- (Clytia hemisphaerica)
ATAGTAGTAAAAGTCGAAGATACGGTGGCAAAAAATCACCTCATTTTAAT
AAAGGACGTAGTTTAGAAAGTAGCGGCTTTGAAGAAGAAACGAACAATAT
CAAATGCCCGTTCGGTAAAAATTGTTCACTCGGTCATAAAAATGGTCGCC
ACGTATACCCGGTTGAAAATAATGACAGGTTAAGCATTCGGAAGGGAAGC
GAGGCAAGTTCTATGATGAGGTCTTGCTCACCCACATCAACTTATTTTAC
CCATGAACATTTTGATTATTTGGTACAACAAATGACGTATTTAAGGGCAG
AGCTCAAAGAAGAGTTTCAACAGTCTATCACCAGAGAACAAAAAATGAAA
GAACATTTCGAATCACAACTCGATGATGTAAGTCCTATTTTGAATTCTTA
ATATTTCTTACGTAATTTCAGTAAACATAAGCAACAAAACCAGTGGGAAA
CTTGAGAATTTCCGATTGATTCTATATTGTTTGGAGATCTGGCATCAATT
TTATAGAACACAACACTCTCTGAATGAATTTTCGTCTTTTTTACGAGAAA
ACTTGTTTAAATTTAGATTTTCAGCAAAAAGCTTCAGTAAATACATTGTA
TCGTTCCCGTGTATTATCGGTTTTTATTTACGTTTAGTAACGCGATGGAC
GCTAGAGAATTATATGGCTTTCACTAACCATTAAAAGGCAGATAATACGC
AGGGAACGAGGTTGAATTATTTGGCCACACCCAGAATCTTAATACGATCC
TCGGTTTGAACAAATAAATTAATACTTTGTTTCCAATATATTTCCACCTT
CAGATGAAAAAAACCATGACGACGGACTACATGGGTTGGATCGCCAACGA
AATGAAACAACTCAAAACTAAATTACACGTAAGTCGAAGTTGAAATGATA
ATTTAGGGGATTTTGATTGGAAGATGAAAGATGATAACCTTAACTTTGAT
TTTGAATTATCTATATGTATCTGTGTATTACTCATACAAAAACAAACTGT
TGAATTTTTAACTTGTACCCAATTTTTGCTAAAATAAGCCAAGTAAAATC
CGATCTTTGGGTTTCAACAATGGAAAAAGAAAAGAAAGTACTAATTTGAA
GTCCTCGTCTTTAAAGAAAATTAAAAGCCGAACGCATATTGACACGGTTG
TGCGCTAGCTCGTTGAAACCAGAGTCGGGTAACCTTATAGTCGACTTCTA
GGCTGCTGGCGTCCACAATCGGATTCGTGCTCCTTATTATACCTGCAGTT
TTGTAGAGGTTTGCGATTTAGACTAAATAGAAATCAATTCTCAACGGAAT
TATTTACATTTCTTTACAGGAAAAAGACGAAGAAATTCGGAGGCTCCGTG
ACATTATTGCTGAAAACGAAGCCCAAGCATCCAAAACAAAGCGACGTGAA
TCCTTTGGGACGCCCGTTTAGTTTAGTTTTCTTGACGTTTACAGTATGTC
CGGAAAAAGCGGGACAGAATTTGTACAGTTGGCACTCTCTAATTCGATTT
TTAAATAAAGGGAATTTGATTTTGATCAAATAAGGTAGTGTATTGAAAAG
AAGAACGTCGTTTATGAGATTTCCTTGTTGAAAATTTACTGATACAAAAT
CTGTCCCGCTTTTTTCCAGACATACTGTATTTTATTTATACAAACATCAT
TACGTAAATTGGTGGACATTCTCAAACATCCAGTATAGATTACCAGCTGT
AAATTACTTTCAGAATCGTTTTATTCTTCCATATAACTGAATTTCAAGTC
AATTCGCTTTAAATGTGCACTGTTGTATAGTTCTGTTTTCAGTCGTTTTT
TGCTTTCCATTTTTCACTGAGTGTTTCGATTACATACCGTTGAAAAAGAT
AATTCAAAGGACTTATTTGGGGAATTATGCTTAAAAGGATTTTGTTTTTT
CATAACTTTCCACAAATTTAAATTTAGTAGTGAAGTTAAGTAAATCGGTA
AAATCACGACAACGAACGAAAATTTAACAGGCTAGTTAGCGAGTTTCAAC
CAATCAAATTTCGTATTTTCACTAGCCTATTACATTTTTCGTCTGTCGTC
GTGATTATCCTGGTATGCTTAACATCAGTAATATGTTTAGATTAGAATAG
GTCTGAGAATGTATGAGGTTGCGTACTTTTTTATATATTTTTTTTCATTA
AATTTAATCACCCTGACCACCCATATTTACACAGATTATTTTATCATGCT
ATTTCATAGACCAAAACAGATAATTTTCTAGACTTTTTTATATTAATTTA
TTTTTTTCGACAGGATTCTAAGGGGACTTTATTTCACATTTATTTAGAAA
CGTTTTCTTAGAAAAAAAATATTTTCTATGACAATATTATTATATGATCA
TTTTAAATAATAATCCTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036372XLOC_036372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057678-exon-scaffold_297-1575043694:48523..48899TCONS_00057678-exon-scaffold_297-1575043694:48523..48899Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1575043694:48022..48096TCONS_00057678-exon-scaffold_297-1575043694:48022..48096Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1575043694:46529..47580TCONS_00057678-exon-scaffold_297-1575043694:46529..47580Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1510915933:48523..48899TCONS_00057678-exon-scaffold_297-1510915933:48523..48899Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1510915933:48022..48096TCONS_00057678-exon-scaffold_297-1510915933:48022..48096Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1510915933:46529..47580TCONS_00057678-exon-scaffold_297-1510915933:46529..47580Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1491911889:48523..48899TCONS_00057678-exon-scaffold_297-1491911889:48523..48899Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1491911889:48022..48096TCONS_00057678-exon-scaffold_297-1491911889:48022..48096Clytia hemisphaericaexon
TCONS_00057678-exon-scaffold_297-1491911889:46529..47580TCONS_00057678-exon-scaffold_297-1491911889:46529..47580Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:46529..48899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0180175	0	0.0619959	0.0678472	0	0	0.105899	0.0667355	0.0313601	0.0678262	0.130757	0.0266737	0	0.070118	0.0395938	0	0.058041	0.252512	0.105359	0	0.205445	0	0	0.589051	0.236583	0	0.0639909
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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