TCONS_00057697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057697
Unique NameTCONS_00057697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057697 ID=TCONS_00057697|Name=TCONS_00057697|organism=Clytia hemisphaerica|type=transcript|length=384bp
CGTTTATCTAATCTAGGTACGAAGGTAAACAGGATACCCACAGGCACAGG
GCAGTTCAGATCATTGTTTGCACTTTTGCGTGTCATCATGCTCATGAATG
CTGGGTAATCGAGTGTACCATCTGCTGATGTATCTGTATCCTCCAACATT
TCTTTGATGTCTGCCTCGCTTACCCGTTGtcccaatgacgtcatcatgtc
TTGTAACTCGTGGACAGATATGGTGCCATCACCGTCACGATCGAATAACG
TGAATGTGTCACGGATGTCATTCAGCTGGTCTTGTGTTAGTGATGTGACC
TCTGTTCCTTTTGTCAAAATATTCGAAAACTTCTTTGAAGTCTGCAATGT
CGTCACGAGTGAAGATTGAATACGCctgaatttt
Run BLAST on NCBI

transcript from alignment at scaffold_297:172526..177424-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057697 ID=TCONS_00057697|Name=TCONS_00057697|organism=Clytia hemisphaerica|type=transcript|length=4899bp|location=Sequence derived from alignment at scaffold_297:172526..177424- (Clytia hemisphaerica)
CGTTTATCTAATCTAGGTACGAAGGTAAACAGGATACCCACAGGCACAGG
GCAGGTAGGAGCAGTTATTAGTATGTTTTTATTATTATTTAAANCGCGGT
CTTAACTCTTAACATTTTTCCATCGCAAGTTTGGGGGGGGGAAACAAAAG
TACTCTATATTTTACGTATGGGGAAGTGTAACAAAGATTTACAAGATAGA
AAAGTTTCGTTTTAGGGTAAAGAATCAGTATTGTGAATTTAATCGAGTTT
CTATTTTGCAATTTTTCTACATAGCCAAATAAAGGTTTTTCTATTGTTCT
TGCTCGATTGCCTCTAAGGATAAGTTCCAAAAGAATGAGGGTATTGAGAC
ATAATATGAGGAATTTGCGGGAAAACGAATTTTAACATTTCTCTAGGCTG
CATGTTGAATATATAGCTAGTCGTTTGGGAGAACGTGACGACCTATTGTC
TATCTGTCTATCTATCTAAATATTTAAATAACATCAGGCCGGAAGGCCCA
TTCTTGCTACATATAAAAATACAATGATAGTCCTGTAAAAACCTTTATTA
CACGTTGAACTATAAAAACAAATAAAAGAAAGCCTGAGAGGGAGTTGAGA
ATTTAAGGTATATGTAAAAGTTTGGAATTCTGACAAAAATTGTGGTTTTC
AGACTGACAATCTTAGATTGAGATTAGTGCCAAAATCGAGATTGAACTTA
TGATAATAACGAATGAAATTTTAAATATCTTGAATACAATAAAATGTTAA
ATTATGATTATAAATAGTAAATAAATATAGTGAAAACTTTTTACTAGAAG
TATTACTAGAAAATAGTTAATTTTTCTTAAAATGTTCAATAAGTTTAGTT
CTGAAGAGATCCTCTTTTGTGATCTTTCTCAAATCAGTTGATAAATTGCT
ATTGACTCAGGTCTGCATATTAAATTACTCCAGCCAATTTCTGTGTTTGT
GCCAGATGGAGAATGAGATGACAGCTGCTCGCGGTTTGCTTTTGACCACT
GGATTCCACTAGTTTTCTACAAGTTTCTACCCGTTTCTACTAGTTTTTCA
TTGGTTTCCACTGGTTTGCACAAGCTTCAGGTTTTAGATTTAACAGAATT
TAAAGCTCAGGAAAGAGTGATATTTTCAGGCTTTCTACTTTATTTAATCA
TATATTTTGATTTGGGAGGGGTGTGATGGCTTCCAGGTTATATTTTCAAC
CTAGTTAGACCATTCACAAGCTTTTTGGATCCTCAAGTCTTAAGCCTTAT
GCTAAAACTCAGAGTTAAAACCCTACTTCCTTAAGTTAAGGCACTTAAAA
ACTACTAGCAATTTTTAAAATTTGGCTGGGAAATCCCTTTGTGTCAACGT
TGTAATTCTTGAAATTTTATTAAATGCACTATATATGAGGTAAACACAGC
TAAGTCAGACTACCTTACAATAAAATGAATTTTTTTCTTGCAAATCGGCA
ATTTTCTTAGCAGTTCCTGCCTCATTATACATCCTTGTCTGGCAGAATTA
AATCTGATAATTTAGGCAGTACAGCCTAAAGGCAGTTAGATTCCCTTTTC
TTTTTGATTTTAATTGACATCTTTACTCGGTGAAGGAGAACTTTCAAGTG
ACTCAAACTGTTTATCCTTACCTTTAGAGAATAAGACATAAAATTTAATT
ACTCTTCAACTACCATTAAGAGACAGTTCAGATTGTCCTTTATCAATTAT
ACTTAAAAATATAGAAAAATGATTTAGGTGGATAATGAGTAAATATTCAA
GAATCTCTGTCCCTATGAGGGAGAGTCAGTTAGAGTGCAAAAATTAGAAG
TTTTTGAAAAATGTTGACAGTTCACCTTCATCAAGTAAAGATTTGAAAAG
AAACTTTATAAGAGAAAACAATCAGATTGTAAGGTCCAGCAGGTTTGACC
AGCTACTTTATTGAGAGTTTAAAAGTTAATTCTTTGGCTACTTTGTCAAA
CACCAAAACATAAGTTGAATGTGGTACATTGGAGGAAAACTAAGTGAATA
GGCTTTTCATTATTGAATCTTAAGCTAATACTCTATTTCATTNGGCTTTC
TACTTTATTTAATCATATATTTTGGGAGGGGTGTGATGGCTTCCAGGTTA
TATTTTCAACCTAGTTAGACCATTCACAAGCTTTTTGGATCCTCAAGTCT
TAAGCCTTATGCTAAAACTCAGAGTTAAAACCCTACTTCCTTAAGTTAAG
GCACTTAAAAACTACTAGCAATTTTTAAAATTTGGCTGGGAAATCCCTTT
GTGTCAACGTTGTAATTCTTGAAATTTTATTAAATGCACTATATATGAGG
TAAACACAGCTAAGTCAGACTACCTTACAATAAAATGAATTTTTTTCTTG
CAAATCGGCAATTTTCTTAGCAGTTCCTGCCTCATTATACATCCTTGTCT
GGCAGAATTAAATCTGATAATTTAGGCAGTACAGCCTAAAGGCAGTTAGA
TTCCCTTTTCTTTTTGATTTTAATTGACATCTTTACTCGGTGAAGGAGAA
CTTTCAAGTGACTCAAACTGTTTATCCTTACCTTTAGAGAATAAGACATA
AAATTTAATTACTCTTCAACTACCATTAAGAGACAGTTCAGATTGTCCTT
TATCAATTATACTTAAAAATATAGAAAAATGATTTAGGTGGATAATGAGT
AAATATTCAAGAATCTCTGTCCCTATGAGGGAGAGTCAGTTAGAGTGCAA
AAATTAGAAGTTTTTGAAAAATGTTGACAGTTCACCTTCATCAAGTAAAG
ATTTGAAAAGAAACTTTATAAGAGAAAACAATCAGATTGTAAGGTCCAGC
AGGTTTGACCAGCTACTTTATTGAGAGTTTAAAAGTTAATTCTTTGGCTA
CTTTGTCAAACACCAAAACATAAGTTGAATGTGGTACATTGGAGGAAAAC
TAAGTGAATAGGCTTTTCATTATTGAATCTTAAGCTAATACTCTATTTCA
TTAGAATACATTTAACTAGATTTTTATTAATACAAAATATATTGATGTTG
ATGTCAATAATTATTTACATTTTCATAAAATAAAGGTCATAAAGATAAAA
ATACAAAAGATCAAGGAGCAATCATGATTTTGGCCATGTGATCAGCTTTG
CAAATTCTAAAGTAGTAGAAAAAATAAATGTGTGATAATTTCAGTAAAAA
GCCTTATTTTGCTATCAATAAGCATTCTATTTGGTAATAACTTTTTGAAT
TTANGCCTTATTCTGCTATCAATAAGCATTCTATTTGGTAATAACTTTAT
GAATTTAAAGCATTTATGATTTGGAAAGCACTGATATAAGAACTTTTGTC
TGACAGAATCTTTTATACAAATTAAACAAAAGTACTAAGAGTTTAGTTCT
TATATCAAGTTTTAAATTGGCGGGAGACTTGGCTTGAGTTTCCAGGAAGC
ATTGATGTCAAAAAGTCCGAGTGGTTGCGTTGACATTCTTATAGGCAAAG
AATTTCGACATTATTTTCTTGTAAATTCATCACCAGTCCCCTCAACAAGG
AAGGAGACAAGAAGTGTTTCCTTGGATGCTGGAAACCCAAAAACAGTCAA
AAGTTGGCTGCACTGTTAAGGGTTGATAGGTGTATTCTGATAATTAGTAT
AAGTCTTACCATGAAACTCAATTTTTCCGTTCCCGTCTAAATCTGCTTCA
TTGAGCATTTCATTAAGATCTTCGTCAGATAAGTCTTCACCAATACGTTT
CATACAGATTTTCAATTCTTCTTTTGTTATTGTACCATCCCCGTCTTGAT
CAAAGAATTTGAAGGCCTATGATGGGAAAAAGTTTTTACTTTTATTATAG
TGTATGTAGAATCTAGATCAANGTGATGGGAAAAAATTAGTACGTTTATT
ATAGTGTATGTAGAATCTAGACCAATTTTCTCACTGAGAGACTTGATTAA
ACCAAGATCACTCTAAGATAGAACCGTTTGCTTGTTGAAAATAGGCTTCT
AATTTATACTGAATTTCGAGTGATTTAATTCATGGGCTTGAAAAAATCAA
AGATAACTTTTACCTCTTTAATTTCACAGTTCAGATCATTGTTTGCACTT
TTGCGTGTCATCATGCTCATGAATGCTGGGTAATCGAGTGTACCATCTGC
TGATGTATCTGTATCCTCCAACATTTCTTTGATGTCTGCCTCGCTTACCC
GTTGTCCCAATGACGTCATCATGTCTTGTAACTCGTGGACAGATATGGTG
CCATCACCGTCACGATCGAATAACGTGAATGTGTCACGGATGTCATTCAG
CTGGTCTTGTGTTAGGTTTGTATAATGACTCTAAGAATAATATAGTGTTA
AATTTATATTCTAATACTAAAGCAATTTTAATTTATCTTCGGTATAAAGG
AAATATTTAGTGAAACGATCGCATTATTTTCAATGGTTTAAGAATTTGAA
TAAGTTTGGCAAACGACCGGGACAAGTTTACAGACACGACGATGTCATAT
ATACATGAACAAATTTATCAGGTGTTTTTCAGTACAGAACCCTGATTTAG
ACGGCCGAGCCATAAAAAGCTAATTATCAAAAGTTCAAAACAACAAAAGC
GCAACAACTTAACCGAGGGCCAGCTCCTCCTCATTGAAAAGACAAACAAT
ATTCTATAGCATACCCTTTTTCTTCGTGGTTTTTTATCATGTATCTGTTT
CTTGCGATTACTTTCAATTGTCGCATGAAGAATATCCAAATATTCTCGAA
AATTGACTGTATTTTTAAATGATATATTTTCCATAAGGCATGTTATGTCA
TTTTCTTTAGGCTTTGGGATGAGTGATCTCAATGTTGTCACCATTTGTTT
TCTAGTGATGTGACCTCTGTTCCTTTTGTCAAAATATTCGAAAACTTCTT
TGAAGTCTGCAATGTCGTCACGAGTGAAGATTGAATACGCCTGAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036378XLOC_036378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057697-exon-scaffold_297-1575043694:177371..177424TCONS_00057697-exon-scaffold_297-1575043694:177371..177424Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1575043694:173160..173395TCONS_00057697-exon-scaffold_297-1575043694:173160..173395Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1575043694:172526..172619TCONS_00057697-exon-scaffold_297-1575043694:172526..172619Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1510915933:177371..177424TCONS_00057697-exon-scaffold_297-1510915933:177371..177424Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1510915933:173160..173395TCONS_00057697-exon-scaffold_297-1510915933:173160..173395Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1510915933:172526..172619TCONS_00057697-exon-scaffold_297-1510915933:172526..172619Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1491911889:177371..177424TCONS_00057697-exon-scaffold_297-1491911889:177371..177424Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1491911889:173160..173395TCONS_00057697-exon-scaffold_297-1491911889:173160..173395Clytia hemisphaericaexon
TCONS_00057697-exon-scaffold_297-1491911889:172526..172619TCONS_00057697-exon-scaffold_297-1491911889:172526..172619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:172526..177424 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.95034	6.52917	1.5363	1.86183	0	0	0.977778	0.469688	0.384673	1.00936	0	0.326815	2.3004	0.96318	0.944341	0.590407	2.33494	1.30837	0	0	0.351182	0	0.575226	2.04513	1.98488	0	0.0612505	0.0326841	0.450029	1.29599
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00057697 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.746e-19
Identity = 34/77 (44.16%), Postives = 57/77 (74.03%), Query Frame = -2 
Query:   60 LTQDQLNDIRDTFTLFDRDGDGTISVHELQDMMTSLGQRVSEADIKEMLEDTDTSADGTLDYPAFMSMMTRKSANND 290
            LT++Q+ + ++ F+LFD+DGDGTI+  EL  +M SLGQ  +EA++++M+ + D   +GT+D+P F++MM RK  + D
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD 81
The following BLAST results are available for this feature:
BLAST of TCONS_00057697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.746e-1944.16Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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