TCONS_00057717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057717
Unique NameTCONS_00057717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057717 ID=TCONS_00057717|Name=TCONS_00057717|organism=Clytia hemisphaerica|type=transcript|length=785bp
GAGAAATTTGGTGAGACACCAAAGAACAGTCCATGAAGGTATTAAGGCAT
TTGAGTGTAAAGAATGTGGCAaatgttttgtagaaaaaagAGATTTAACT
TCTCATCAATTAACAGTCCATGAGGGGATAAATCCTTTTGAGTGTCAAGA
ATGTGCTAAATCTTTTGCTACAAAGAGTTGTTTGGTGAGGCATCAAAGAA
CAGTCCATCAAGGTATAAAGCCTtttaaatgtcaagaatgtggtaaatgc
ttTGTAGATAAAACCAAGTTAACTTTTCATCAAATAGCTGTCCATCAACT
AGGTATAAAGCCTTTCAAATGTCAGGAATGTGTCAAGTCTTTTACAATGA
AAAGTTATTTGAAGGCGCATCAAAGAACAGTCCATCAAGGTATGAAACCA
TTTttgtgtcaagaatgtggtaaatatTTTGGAACTAAAACGAAATTAAC
TGTGCACCAAAGAACAGTTCATGAAGgtataaagctttttaaatgtcaag
aatgtTGTAAATCATTTGGACTTAAATCGACCCTTACTACGCATCAAAGA
ACAGTCCATGAAGGTATTAAGGCATttgaatgtcaagaatgtgCTAAAAG
TTTTGGGCAGAAAACGACCTTAACTTTTCATCAAAGAACAGTTCATGAAG
GTATAAAGCCCtttaaatgtcaagaatgtgaTAAGTCTTTTACGAGCAAA
AGCTATTTGAAGGTGCATCAAAAAACGGTCCATCAAGGTgtaaaagcctt
taaatgtcaagaatgtAGTAAATGTTTTGGACANN
Run BLAST on NCBI

transcript from alignment at scaffold_298:31996..32780+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057717 ID=TCONS_00057717|Name=TCONS_00057717|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at scaffold_298:31996..32780+ (Clytia hemisphaerica)
GAGAAATTTGGTGAGACACCAAAGAACAGTCCATGAAGGTATTAAGGCAT TTGAGTGTAAAGAATGTGGCAaatgttttgtagaaaaaagAGATTTAACT TCTCATCAATTAACAGTCCATGAGGGGATAAATCCTTTTGAGTGTCAAGA ATGTGCTAAATCTTTTGCTACAAAGAGTTGTTTGGTGAGGCATCAAAGAA CAGTCCATCAAGGTATAAAGCCTtttaaatgtcaagaatgtggtaaatgc ttTGTAGATAAAACCAAGTTAACTTTTCATCAAATAGCTGTCCATCAACT AGGTATAAAGCCTTTCAAATGTCAGGAATGTGTCAAGTCTTTTACAATGA AAAGTTATTTGAAGGCGCATCAAAGAACAGTCCATCAAGGTATGAAACCA TTTttgtgtcaagaatgtggtaaatatTTTGGAACTAAAACGAAATTAAC TGTGCACCAAAGAACAGTTCATGAAGgtataaagctttttaaatgtcaag aatgtTGTAAATCATTTGGACTTAAATCGACCCTTACTACGCATCAAAGA ACAGTCCATGAAGGTATTAAGGCATttgaatgtcaagaatgtgCTAAAAG TTTTGGGCAGAAAACGACCTTAACTTTTCATCAAAGAACAGTTCATGAAG GTATAAAGCCCtttaaatgtcaagaatgtgaTAAGTCTTTTACGAGCAAA AGCTATTTGAAGGTGCATCAAAAAACGGTCCATCAAGGTgtaaaagcctt taaatgtcaagaatgtAGTAAATGTTTTGGACANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036398XLOC_036398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057717-exon-scaffold_298-1491911889:31996..32780TCONS_00057717-exon-scaffold_298-1491911889:31996..32780Clytia hemisphaericaexon
TCONS_00057717-exon-scaffold_298-1510915933:31996..32780TCONS_00057717-exon-scaffold_298-1510915933:31996..32780Clytia hemisphaericaexon
TCONS_00057717-exon-scaffold_298-1575043694:31996..32780TCONS_00057717-exon-scaffold_298-1575043694:31996..32780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:31996..32780 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66615 3.15156 1.23009 1.30094 4.1552 4.33675 7.82331 7.54235 1.9765 1.5975 3.20489 2.36123 1.4995 1.27957 2.32456 3.02248 2.52072 3.13542 0.598096 0.257289 2.02504 1.9697 5.19624 5.66088 1.32836 2.25975 1.47801 0.431098 1.91651 2.24998
Blast
BLAST of TCONS_00057717 vs. Swiss-Prot (Human)
Match: ZN268 (Zinc finger protein 268 OS=Homo sapiens GN=ZNF268 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.647e-69
Identity = 132/257 (51.36%), Postives = 166/257 (64.59%), Query Frame = 2
Query:    8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778
            L+ HQRT H G K +EC +CGK F  K  L  HQ T H G  PFEC EC K+F TKS L+ HQRT H G KP+ C ECGK F  K++L  H+  VH  G+KP+ C +C K+F++KS L  HQR+ H G+KP+ C ECGK F +K+ L +H RT H G K  +C+EC KSF   S L  HQR +H G   +EC EC K+F +K  L  HQRT H G KP+ C EC K+F+SKSYL +H +T H G K ++C EC K F
Sbjct:  571 LISHQRT-HAGEKPYECTDCGKAFGLKSQLIIHQRT-HTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPYSCNECGKAFTFKSQLIVHK-GVH-TGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPYECSECGKAFNRKDQLISHQRT-HAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPYECNECGKAF 817          

HSP 2 Score: 211.46 bits (537), Expect = 3.854e-62
Identity = 130/311 (41.80%), Postives = 170/311 (54.66%), Query Frame = 2
Query:    5 NLVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFH-----------------------QIAVHQ---LGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRT---------------------------VHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778
            NL+ HQRT H G K + C +CGK F  K  L  HQ  +H G+ P+ C +C K F+ KS L+ HQR+ H G+KP+ C ECGK F  K+ L  H                       Q+ +HQ    G  P++C EC K+F+ K  L +HQRT H G KP+ C +CGK FG K++L +HQRT H G K F+C EC K+F  KS L  HQRT                           VH G+K + C +CAK+F  K+ L  HQR+ H G+KP+ C EC K+F SKSYL +H +T H G K  +C+EC K F
Sbjct:  430 NLMVHQRT-HTGEKPYVCSDCGKAFTFKSQLIVHQ-GIHTGVKPYGCIQCGKGFSLKSQLIVHQRS-HTGMKPYVCNECGKAFRSKSYLIIHTRTHTGEKLHECNNCGKAFSFKSQLIIHQRIHTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPYECTDCGKAFGLKSQLIIHQRT-HTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKPHECRECGKSF 733          

HSP 3 Score: 209.92 bits (533), Expect = 1.403e-61
Identity = 126/257 (49.03%), Postives = 155/257 (60.31%), Query Frame = 2
Query:    8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778
            L+ HQR+ H G+K + C ECGK F  K  L  H  T H G  P EC+EC KSF+  S L+ HQR +H G  P++C ECGK F  K +L  HQ      G KP+ C EC K+F+ KSYL  H RT H G KP+ C ECGK F  K+ L VH+RT H G+  +KC +C KSF  K  L  HQR +H   K +EC EC K+F + + L  HQRT H G KP+ C EC K+F+ KS L  HQ+T H G K  KC EC K F
Sbjct:  683 LIVHQRS-HTGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPYECSECGKAFNRKDQLISHQRT--HAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPYECNECGKAFIWKSLLIVHERT-HAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPYECSECGKAFIRNSQLIVHQRT-HSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPCKCTECGKAF 929          

HSP 4 Score: 205.682 bits (522), Expect = 4.609e-60
Identity = 122/258 (47.29%), Postives = 156/258 (60.47%), Query Frame = 2
Query:    8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCFG 781
            LV HQR +H G   +EC ECGK F  K  L SHQ T H G  P+ C EC K+F  KS L+ H+R +H G KP++C EC K F  K+ L  HQ      G KP+ C +C K+FT KS L  HQ  +H G+KP+ C +CGK F  K++L VHQR+ H G+K + C EC K+F  KS L  H RT H G K  EC  C K+F  K+ L  HQR +H G  P++C EC K+F+ K  L  HQ+T H G K ++C +C K FG
Sbjct:  347 LVIHQR-IHTGENPYECCECGKVFSRKDQLVSHQKT-HSGQKPYVCNECGKAFGLKSQLIIHER-IHTGEKPYECNECQKAFNTKSNLMVHQRT--HTGEKPYVCSDCGKAFTFKSQLIVHQ-GIHTGVKPYGCIQCGKGFSLKSQLIVHQRS-HTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGEKLHECNNCGKAFSFKSQLIIHQR-IHTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPYECTDCGKAFG 594          

HSP 5 Score: 195.282 bits (495), Expect = 2.137e-56
Identity = 118/240 (49.17%), Postives = 146/240 (60.83%), Query Frame = 2
Query:    8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKT 727
            L+ H RT H G K  EC+ECGK F     L  HQ  +H G NP+EC EC K+F  K  L+ HQRT H G KP+ C ECGK F  K+ L  H +  H  G KP++C EC K+F  KS L  H+RT H G+ P+ C +C K F  K +L VHQR +H   K ++C EC K+F   S L  HQRT H G K + C EC K+F QK+ L+ HQRT H G KP KC EC K+F  KS L +HQ+T
Sbjct:  711 LIIHMRT-HTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPYECSECGKAFNRKDQLISHQRT-HAGEKPYGCSECGKAFSSKSYLIIH-MRTHS-GEKPYECNECGKAFIWKSLLIVHERT-HAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPYECSECGKAFIRNSQLIVHQRT-HSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPCKCTECGKAFCWKSQLIMHQRT 941          

HSP 6 Score: 185.267 bits (469), Expect = 8.754e-53
Identity = 112/250 (44.80%), Postives = 151/250 (60.40%), Query Frame = 2
Query:   29 VHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778
            ++ G K F C  C K F  K  L  HQ T H    P+ C EC K F++KS L+ HQR +H G K  +C EC K F   ++L  HQ  +H  G  P++C EC K F+ K  L +HQ+T H G KP++C ECGK FG K++L +H+R +H G K ++C EC K+F  KS L  HQRT H G K + C +C K+F  K+ L  HQ  +H G+KP+ C +C K F+ KS L VHQ++ H G+K + C EC K F
Sbjct:  269 MYMGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPYGCNECGKDFSSKSYLIVHQR-IHTGEKLHECSECRKTFSFHSQLVIHQ-RIH-TGENPYECCECGKVFSRKDQLVSHQKT-HSGQKPYVCNECGKAFGLKSQLIIHER-IHTGEKPYECNECQKAFNTKSNLMVHQRT-HTGEKPYVCSDCGKAFTFKSQLIVHQ-GIHTGVKPYGCIQCGKGFSLKSQLIVHQRS-HTGMKPYVCNECGKAF 509          

HSP 7 Score: 106.301 bits (264), Expect = 2.972e-25
Identity = 72/161 (44.72%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  299 LGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCFG 781
            +GIK  +  E  K+   KS L   Q  ++ G KPF C  C K F +K+ L VHQ+T H   K + C EC K F  KS L  HQR +H G K  EC EC K+F   + L  HQR +H G  P++C EC K F+ K  L  HQKT H G K + C EC K FG
Sbjct:  244 IGIKYCESIESGKTVNKKSQLMCQQ--MYMGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPYGCNECGKDFSSKSYLIVHQR-IHTGEKLHECSECRKTFSFHSQLVIHQR-IHTGENPYECCECGKVFSRKDQLVSHQKT-HSGQKPYVCNECGKAFG 398          
The following BLAST results are available for this feature:
BLAST of TCONS_00057717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2682.647e-6951.36Zinc finger protein 268 OS=Homo sapiens GN=ZNF268 ... [more]
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