Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057717 ID=TCONS_00057717|Name=TCONS_00057717|organism=Clytia hemisphaerica|type=transcript|length=785bpRun BLAST on NCBI transcript from alignment at scaffold_298:31996..32780+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057717 ID=TCONS_00057717|Name=TCONS_00057717|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at scaffold_298:31996..32780+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00057717 vs. Swiss-Prot (Human)
Match: ZN268 (Zinc finger protein 268 OS=Homo sapiens GN=ZNF268 PE=1 SV=2) HSP 1 Score: 231.491 bits (589), Expect = 2.647e-69 Identity = 132/257 (51.36%), Postives = 166/257 (64.59%), Query Frame = 2 Query: 8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778 L+ HQRT H G K +EC +CGK F K L HQ T H G PFEC EC K+F TKS L+ HQRT H G KP+ C ECGK F K++L H+ VH G+KP+ C +C K+F++KS L HQR+ H G+KP+ C ECGK F +K+ L +H RT H G K +C+EC KSF S L HQR +H G +EC EC K+F +K L HQRT H G KP+ C EC K+F+SKSYL +H +T H G K ++C EC K F Sbjct: 571 LISHQRT-HAGEKPYECTDCGKAFGLKSQLIIHQRT-HTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPYSCNECGKAFTFKSQLIVHK-GVH-TGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPYECSECGKAFNRKDQLISHQRT-HAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPYECNECGKAF 817 HSP 2 Score: 211.46 bits (537), Expect = 3.854e-62 Identity = 130/311 (41.80%), Postives = 170/311 (54.66%), Query Frame = 2 Query: 5 NLVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFH-----------------------QIAVHQ---LGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRT---------------------------VHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778 NL+ HQRT H G K + C +CGK F K L HQ +H G+ P+ C +C K F+ KS L+ HQR+ H G+KP+ C ECGK F K+ L H Q+ +HQ G P++C EC K+F+ K L +HQRT H G KP+ C +CGK FG K++L +HQRT H G K F+C EC K+F KS L HQRT VH G+K + C +CAK+F K+ L HQR+ H G+KP+ C EC K+F SKSYL +H +T H G K +C+EC K F Sbjct: 430 NLMVHQRT-HTGEKPYVCSDCGKAFTFKSQLIVHQ-GIHTGVKPYGCIQCGKGFSLKSQLIVHQRS-HTGMKPYVCNECGKAFRSKSYLIIHTRTHTGEKLHECNNCGKAFSFKSQLIIHQRIHTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPYECTDCGKAFGLKSQLIIHQRT-HTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKPHECRECGKSF 733 HSP 3 Score: 209.92 bits (533), Expect = 1.403e-61 Identity = 126/257 (49.03%), Postives = 155/257 (60.31%), Query Frame = 2 Query: 8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778 L+ HQR+ H G+K + C ECGK F K L H T H G P EC+EC KSF+ S L+ HQR +H G P++C ECGK F K +L HQ G KP+ C EC K+F+ KSYL H RT H G KP+ C ECGK F K+ L VH+RT H G+ +KC +C KSF K L HQR +H K +EC EC K+F + + L HQRT H G KP+ C EC K+F+ KS L HQ+T H G K KC EC K F Sbjct: 683 LIVHQRS-HTGVKPYGCSECGKAFRSKSYLIIHMRT-HTGEKPHECRECGKSFSFNSQLIVHQR-IHTGENPYECSECGKAFNRKDQLISHQRT--HAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPYECNECGKAFIWKSLLIVHERT-HAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPYECSECGKAFIRNSQLIVHQRT-HSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPCKCTECGKAF 929 HSP 4 Score: 205.682 bits (522), Expect = 4.609e-60 Identity = 122/258 (47.29%), Postives = 156/258 (60.47%), Query Frame = 2 Query: 8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCFG 781 LV HQR +H G +EC ECGK F K L SHQ T H G P+ C EC K+F KS L+ H+R +H G KP++C EC K F K+ L HQ G KP+ C +C K+FT KS L HQ +H G+KP+ C +CGK F K++L VHQR+ H G+K + C EC K+F KS L H RT H G K EC C K+F K+ L HQR +H G P++C EC K+F+ K L HQ+T H G K ++C +C K FG Sbjct: 347 LVIHQR-IHTGENPYECCECGKVFSRKDQLVSHQKT-HSGQKPYVCNECGKAFGLKSQLIIHER-IHTGEKPYECNECQKAFNTKSNLMVHQRT--HTGEKPYVCSDCGKAFTFKSQLIVHQ-GIHTGVKPYGCIQCGKGFSLKSQLIVHQRS-HTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGEKLHECNNCGKAFSFKSQLIIHQR-IHTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPYECTDCGKAFG 594 HSP 5 Score: 195.282 bits (495), Expect = 2.137e-56 Identity = 118/240 (49.17%), Postives = 146/240 (60.83%), Query Frame = 2 Query: 8 LVRHQRTVHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKT 727 L+ H RT H G K EC+ECGK F L HQ +H G NP+EC EC K+F K L+ HQRT H G KP+ C ECGK F K+ L H + H G KP++C EC K+F KS L H+RT H G+ P+ C +C K F K +L VHQR +H K ++C EC K+F S L HQRT H G K + C EC K+F QK+ L+ HQRT H G KP KC EC K+F KS L +HQ+T Sbjct: 711 LIIHMRT-HTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPYECSECGKAFNRKDQLISHQRT-HAGEKPYGCSECGKAFSSKSYLIIH-MRTHS-GEKPYECNECGKAFIWKSLLIVHERT-HAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPYECSECGKAFIRNSQLIVHQRT-HSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPCKCTECGKAFCWKSQLIMHQRT 941 HSP 6 Score: 185.267 bits (469), Expect = 8.754e-53 Identity = 112/250 (44.80%), Postives = 151/250 (60.40%), Query Frame = 2 Query: 29 VHEGIKAFECKECGKCFVEKRDLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKPFKCQECGKCFVDKTKLTFHQIAVHQLGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCF 778 ++ G K F C C K F K L HQ T H P+ C EC K F++KS L+ HQR +H G K +C EC K F ++L HQ +H G P++C EC K F+ K L +HQ+T H G KP++C ECGK FG K++L +H+R +H G K ++C EC K+F KS L HQRT H G K + C +C K+F K+ L HQ +H G+KP+ C +C K F+ KS L VHQ++ H G+K + C EC K F Sbjct: 269 MYMGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPYGCNECGKDFSSKSYLIVHQR-IHTGEKLHECSECRKTFSFHSQLVIHQ-RIH-TGENPYECCECGKVFSRKDQLVSHQKT-HSGQKPYVCNECGKAFGLKSQLIIHER-IHTGEKPYECNECQKAFNTKSNLMVHQRT-HTGEKPYVCSDCGKAFTFKSQLIVHQ-GIHTGVKPYGCIQCGKGFSLKSQLIVHQRS-HTGMKPYVCNECGKAF 509 HSP 7 Score: 106.301 bits (264), Expect = 2.972e-25 Identity = 72/161 (44.72%), Postives = 89/161 (55.28%), Query Frame = 2 Query: 299 LGIKPFKCQECVKSFTMKSYLKAHQRTVHQGMKPFLCQECGKYFGTKTKLTVHQRTVHEGIKLFKCQECCKSFGLKSTLTTHQRTVHEGIKAFECQECAKSFGQKTTLTFHQRTVHEGIKPFKCQECDKSFTSKSYLKVHQKTVHQGVKAFKCQECSKCFG 781 +GIK + E K+ KS L Q ++ G KPF C C K F +K+ L VHQ+T H K + C EC K F KS L HQR +H G K EC EC K+F + L HQR +H G P++C EC K F+ K L HQKT H G K + C EC K FG Sbjct: 244 IGIKYCESIESGKTVNKKSQLMCQQ--MYMGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPYGCNECGKDFSSKSYLIVHQR-IHTGEKLHECSECRKTFSFHSQLVIHQR-IHTGENPYECCECGKVFSRKDQLVSHQKT-HSGQKPYVCNECGKAFG 398 The following BLAST results are available for this feature:
BLAST of TCONS_00057717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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