TCONS_00057744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057744
Unique NameTCONS_00057744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057744 ID=TCONS_00057744|Name=TCONS_00057744|organism=Clytia hemisphaerica|type=transcript|length=698bp
GAAACTCGCGATACCGAAGTTTGTTGTCGTAAATTTCTCGGTTGTTGGAA
GAAATGTAAACGAACTTCCGTGATCAACAAACAAGTCTCGAAGATTGTCA
GTCGTTTGGTGAACTACAAAGTCCATCATTGTTGCTCGGGATATTCTGTC
AATGATGAAAAGACTGAATGCACAAAGCCCGTTTGTTTTCCGCCTTGTAA
GAATGGAGGGAAATGTAAACAACCGGATCAATGTAGCTGTGCGAAGGGCT
TCGAAGGAACAATTTGCCAATTTGACAAGAACGAGTGTTTGCCGGGCAAA
GAAGGATACTCTAAATGTCTTGCAATGCAGAAAGGTGGAAACGGAGCACA
ACAATCTTCTTCAGTATGTGTCAATATACCCGGATCATATTATTGTGCGT
GCAAACGAGGCTACACGCCGttccaaaataacaaaagaaatgtgACGGAA
TGTGAAAATATTGACGAATGTAAAAAATCTCCATGTAAATGTGCACCAGA
AATCGCCAACTGTCATCAAATCGCTACTTGCACTGATGTGCCTGGATCCT
ACAAATGTTCCTGTAGTCATGGATACAGACTATCACGTGACAACCTATGC
GTGGATCGGAATGAATGCTTTGAGAATGAGAATATTTGTCcacaaatttg
tcaaaacacTATAGGTTCATATCAATGTAAATGTTTCGATGGATTCGA
Run BLAST on NCBI

transcript from alignment at scaffold_298:172621..176680+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057744 ID=TCONS_00057744|Name=TCONS_00057744|organism=Clytia hemisphaerica|type=transcript|length=4060bp|location=Sequence derived from alignment at scaffold_298:172621..176680+ (Clytia hemisphaerica)
GAAACTCGCGATACCGAAGTTTGTTGTCGTAAATTTCTCGGTTGTTGGAA
GAAATGTAAACGAACTTCGTAAGTTTCTCTTCTCCTTTGTAATCTTCTTT
ATTTCTCCGGTCAGAATCTTATTTTGGGGAcagagaaaaatttcttttgg
aaaaaaaactttttcgaaatATTTAAGGCACTATCCGATTTTCGCCAGGA
GTggcaaattaaagaaaaatttgagcaagacaaaatttgtttaaaatttg
ccaCTTCTAGCAAAAACCGGAGCTTTTCCATAAAaagcattacgtcatga
atatcatgttATGAATTAtggtcgttttgtataagattcccatttccgca
ctaagattcttgtcacttttccggaATTTTCCACTATTTTCTCGGAATAC
CCGGCATGAgtttgtttctaaaggtacgAAAAACTAGCGTTTACTCTCAC
GAAACTtcctaactttccgaagcttatTCTTtacccagacggcacacaac
gtcaaaacaacgtccatttgacattcataacgtccaaataacgttatttg
aacgttaaaacaacgttgtgtgccagctgggtatgcAACTACCCGAAGAA
CTACccgaagtcctggtctttttccgctaAAAAGTGGCAGTAGAATCTTA
GTGTGGAGATGGGAATCTAATACAAAACGACGGTAATTCATgatatgata
ttcatgacgtaatgctttttatggaaaaactccggtttttgccagtagtg
gcaaattttaaacaatttttgtcaggctcaaatttcttaaatttgccCCT
CCTTTCCGAAAACCGGGAAATTTCTGACGgtaatttatgaaacaaatCTT
CATATTGTTTCAGCGTGATCAACAAACAAGTCTCGAAGATTGTCAGTCGT
TTGGTGAACTACAAAGTCCATCATTGTTGCTCGGGATATTCTGTCAATGA
TGAAAAGACTGAATGCACAAAGCGTAAGTTgattcttttatcaaaaaacg
tcaatttacACATTTATCTTAAAGCTCCGAAGGGGCTGGTTCCGAAACTC
CTGGATGAgaaatgggaaatgaagccacttatttcacAAATTTCTGAATT
TCTAAATCTTGATACAGTTGACACTCCATAATTTGAATTTCTACCATTTG
ATacactccattattcgataatattgaaagtcatcgTCAACaggaaactc
tcataaacgacgctctactatttgatacgTTCCATTATTCAATGGAAATT
CAATTTCCGTTGAAAATTgaatagcgcaccgcgctgaatctaaaaataga
ttttatttttgacataatcattactctcgatgtgtttgtacgagttccaa
tcccatcatcctttgcgttaatctcttttgcacgttaattgcatcatttg
acaatagatatataacaacttgcgcgtatctttaattgagccgcattgaa
ttgtgggattgcaactcgtacaaatgtcaaaaaaaagtgaaaagtaataa
ttatgacgtaagcgttgcggagcgctattagcgagagtcaactgtatccC
AACTggcaaaaaacgttgtttcaacgttcgtctaacgttatatggacgtt
gtgaacgttaaataaacgttgaaacaacgttgtgttccAGCTGGGATCAC
TGTATATTCGAAATCATTACTTAAATGACCTTTTtgtatttcattctttt
tcacaGCCGTTTGTTTTCCGCCTTGTAAGAATGGAGGGAAATGTAAACAA
CCGGATCAATGTAGCTGTGCGAAGGGCTTCGAAGGAACAATTTGCCAATT
TGGTAAGTGTGAAACCAATGAAAATAAGGACACTCTTGATCTTCGGGTAA
TAATTTGAAACTATTCTTTCAGGAGATTGGGTGGCAGAGCACCGTATGCA
TTTCggccttattaggactcgtcagcactgcatactgcaccctgaCTAGG
AAGATCAAATTGCCTAGCATCTCACGCCATAAAACTAACTGTGGTGCAGA
CTGAAAGAAGAAGTGGATAGAATATATTTTTACTCAGAAATAGGAATATG
GAAACTACAACGTTTCTACTGTTTTTCCTATTTGTACAAAAAGTTCATTA
AATCTCCATTAAATCTCACATTTTCCCTTCTCGTTTGCTGACAGACAAGA
ACGAGTGTTTGCCGGGCAAAGAAGGATACTCTAAATGTCTTGCAATGCAG
AAAGGTGGAGACGGAGCACAACAATCTTCTTCAGTATGTGTCAATATACC
CGGATCGTATTATTGTGCGTGCAAACGAGGCTACACGCCGttccaaaata
acaaaagaaatgtgACGGAATGTGAAAGTAAGTcttctttattttaaaaa
ttctttgttttgaaaaaaacgaaagaaGTGACACAAAAGGGGAAGGCAAC
AAATTTGATTCCTATTGCGCTGTGCGCTTGATCATTTTAAGGGTTGgatc
aaaatatttcttcaaaCACAAAGGAAATTTTGTGCAAAACTGAACAAGAC
CTTACCACACTGTTTTAATGCATTTTCAAAATAGTCagcactctctaatt
cgataaaaatcttgaaaatcgaatcagagagcgtcaactgtattcaaCTT
TAGAAAATCTTCGAAATTCCTCATAGATTCTTCTCTCTTTAATAGATATT
GACGAATGTAAAAAATCTCCATGTAAATGTGCACCAGAAATCACTAACTG
TCATAAAATCGCTACTTGCACTGATGTACCTGGATCCTACAAATGTTCCT
GTAGTCATGGATACAGACTATCACGTGACAACCTATGCGTGGATCGGAAT
GAATGCTTTGAGAATGAGAACATTTGTCCACAAATTTGCCAAAACACAAT
AGGTTCATATCAATGTAAATGTTTCGATGGCTTCGAATGGGATCCTGCTC
TCAAGGCTTGTAAAGGTATGTTCACATATATACCTAACATTTCGATAGTT
TTTAAGTGACCGTTGTGCAAAGGTAGAGCATTCGGCNgacaagcatcagt
tgatccCCTGAACactcaaaattacccccaaacagagcaagtttaccgcc
cagacaaggcaaattttgtagatttttcactaccctccggacactatatc
ctcccatttacgaacattttctgaaaGAGCCCAATCTCCATTGAAATCTT
CCCAATCTTCTTTTCTCCGACAGACAAGAACGAGTGTTTGCCGGGCAAAG
AAGGATACTCTAAATGTCTTGCAATGCAGAAAGGTGGAAACGGAGCACAA
CAATCTTCTTCAGTATGTGTCAATATACCCGGATCATATTATTGTGCGTG
CAAACGAGGCTACACGCCGttccaaaataacaaaagaaatgtgACGGAAT
GTGAAAGtaagttttctttattttaaaaattttttgttttgaaaaggaCG
AGAAGTGATACAATAGGAGAAACAACACATTTGACACCTATTGCGCTGTG
CACTTGATCATTGCATcgggcttttccaaaaaaaaacccctgttgaggag
gtccaactttttgtgacctacccccttggaattccaggcaattttaggat
cattcCCCTCTGGAATtgcgaaattttacaaattttcaataattaccccc
ttggaattccacttatttttgacggatttttgtctacccttatggaattc
cactacATTTCAAACCTTGCCCCATTGGAACGGAAAtgaacctcctcaac
agggggtgcacgatttttttttgGAGTCTTAATTATCGAATTATAAGAGC
GCCAGCtgtatttgtaaaaaattatgaaaaatcttcaaaatttctcATTG
ATTCTTCTTTCTTTAATAGATATTGACGAATGTAAAAAATCTCCATGTAA
ATGTGCACCAGAAATCGCCAACTGTCATCAAATCGCTACTTGCACTGATG
TGCCTGGATCCTACAAATGTTCCTGTAGTCATGGATACAGACTATCACGT
GACAACCTATGCGTGGATCGGAATGAATGCTTTGAGAATGAGAATATTTG
TCcacaaatttgtcaaaacacTATAGGTTCATATCAATGTAAATGTTTCG
ATGGATTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036404XLOC_036404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057744-exon-scaffold_298-1491911889:172621..172688TCONS_00057744-exon-scaffold_298-1491911889:172621..172688Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1510915933:172621..172688TCONS_00057744-exon-scaffold_298-1510915933:172621..172688Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1575043694:172621..172688TCONS_00057744-exon-scaffold_298-1575043694:172621..172688Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1491911889:173484..173593TCONS_00057744-exon-scaffold_298-1491911889:173484..173593Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1510915933:173484..173593TCONS_00057744-exon-scaffold_298-1510915933:173484..173593Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1575043694:173484..173593TCONS_00057744-exon-scaffold_298-1575043694:173484..173593Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1491911889:174327..174422TCONS_00057744-exon-scaffold_298-1491911889:174327..174422Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1510915933:174327..174422TCONS_00057744-exon-scaffold_298-1510915933:174327..174422Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1575043694:174327..174422TCONS_00057744-exon-scaffold_298-1575043694:174327..174422Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1491911889:175794..175976TCONS_00057744-exon-scaffold_298-1491911889:175794..175976Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1510915933:175794..175976TCONS_00057744-exon-scaffold_298-1510915933:175794..175976Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1575043694:175794..175976TCONS_00057744-exon-scaffold_298-1575043694:175794..175976Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1491911889:176440..176680TCONS_00057744-exon-scaffold_298-1491911889:176440..176680Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1510915933:176440..176680TCONS_00057744-exon-scaffold_298-1510915933:176440..176680Clytia hemisphaericaexon
TCONS_00057744-exon-scaffold_298-1575043694:176440..176680TCONS_00057744-exon-scaffold_298-1575043694:176440..176680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:172621..176680 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0932766	0	0	0.272093	0	0	0.969576	0.344449	0.103373	0.541088	0.119081	0.111648	0.106315	0.750291	0.155614	0.523454	0.202989	0.818787	1.13297	2.44029	0.640493	0.508053	0.734048	1.11185
Blast
[Close]
BLAST of TCONS_00057744 vs. Swiss-Prot (Human)
Match: PROS (Vitamin K-dependent protein S OS=Homo sapiens GN=PROS1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.451e-18
Identity = 59/170 (34.71%), Postives = 83/170 (48.82%), Query Frame = 1 
Query:  187 FPPCKNGGKCKQPDQCSCAKGFEGTICQFDKNECLPGKEGYSKCLAMQKGGNGAQQSSSVCVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEIANCHQIATCTDVPGSYKCSCSHGYRLS-RDNLCVDRNECFENENICPQICQNTIGSYQCKCFDG 693
            +  CK+G   K    C+C  G++G  C+FD NEC         C             S +C N PGSY+C+CK G+    N K    +C+++DEC   P  C          A C ++PG ++C C  GYR + +   C D +EC  +EN+C Q+C N  G Y C C DG
Sbjct:  131 YMSCKDG---KASFTCTCKPGWQGEKCEFDINECKDPSNINGGC-------------SQICDNTPGSYHCSCKNGFVMLSNKK----DCKDVDECSLKPSICG--------TAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC--SENMCAQLCVNYPGGYTCYC-DG 269
The following BLAST results are available for this feature:
BLAST of TCONS_00057744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PROS2.451e-1834.71Vitamin K-dependent protein S OS=Homo sapiens GN=P... [more]
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