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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057765 ID=TCONS_00057765|Name=TCONS_00057765|organism=Clytia hemisphaerica|type=transcript|length=1543bp
NNCAAATTTCTCTTTGTagcaaaagatttaccacattcttgacatttaaa
AGGTTTATCATATATCGTTCTTTGATGTTCTTTAACCGAACTTTTCGTTA
TTTCGTCAATGTTTGGATTTTCGATCTTGTCAGCCTCAAAACATTCctgt
ttattttcattttcatggttttgaaacaatttatcttcaaatttaATAGT
GATTTTTTCACCGATCTGTGAATTCATTTCCTTAATCAGTGAAAACTGAT
CAAAACAATTCGTTCCATCGTTAATATTTACTACACTTTGATTCTTATCA
TCTAGAGATTTTAACTCATCTTCAAGTTTAATGGcgattttataattttt
gggGTCAGTTTCTTCGGTTGATGTAACATCGTTCCCCTTTACATTTCTAC
AAGAATTATTAAAAAGTTCACTTTCATGGTTTTTTAATGGTTCCAAAATT
GCGTTGTCTGGATATCCAATTGATTCATCTTCAagtttgataataatttc
caaATTATTATGAATTGTTTCATCACAACcatgatcttcttcttcttcaa
tttttatttctatttcttcaatctcattcatttcatttaaacaaaATGCT
CtaagataaaagaaaaatacagTAACAGAATTGAAATTATTATGTTTGAA
AAGATTTAAAGCAGTCCTNTAGCAAAAGATTTACTACATTCTCGACATTT
AAAAAGCCTTATACCTTGATGAACAGTTCTTTGATGAGAAGTTAATTTCC
TTTTCTCTGcgaaacatttaccacattcttgacatttaaaggcttttatA
CCTTGATGGACTGTTCTTTGGTGCCTCAACAAATTTCTCTTTGTagcaaa
agatttaccacattcttgacatttaaaAGGTTTATGATATATCGTTCTTT
GATGTTCTTTAACCGAACTTTTCGTTATTTCGTCAATGTTTGGATTTTCG
ATCTTGTCAGCCTCAAAACATTCCtgcttattttcattttcatggttttg
aaacaatttatcttcaaatttaATAGTGATTTCCTCACCGATCTGTGAAT
TCATTTCCTTAATCAGTGAAAATTGATCAAAACAATTCGTTCCATCGTTA
ATATTTACTACACTTTGATTCTTATCATCTAGAGATTTTAACTCATCTTC
AAGTTTAATGGcgattttataatttttgggGTCAGTTTCTTCGGTTGAAG
TAACATCGTTCCCCTTTACATTTCTACAAGAATTATTAAAAAGTTCACTT
TCATGGTTTTTTAATGGTTCCAAAATTGCGTCGTCTGGAAATccaattga
ttcatttttcagtttgataataatttccaaATTATTATGAATTGTTTCAT
CACAACcatgatcttcttcttcttcaatttttatttctatttcttcaatc
tcattcatttcatttaaacaaaATGCTCtaagataaaagaaaaatacagT
AACAGAATTGAAATTATTATGTTTGAAAAGATTTAAAGCAGTCCTTAAGT
TAAATTGtagatgaaatttaaaaaacgaCGGCCCAAATTGTTT Run BLAST on NCBI transcript from alignment at scaffold_298:67662..69204- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057765 ID=TCONS_00057765|Name=TCONS_00057765|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at scaffold_298:67662..69204- (Clytia hemisphaerica)
NNCAAATTTCTCTTTGTAGCAAAAGATTTACCACATTCTTGACATTTAAA
AGGTTTATCATATATCGTTCTTTGATGTTCTTTAACCGAACTTTTCGTTA
TTTCGTCAATGTTTGGATTTTCGATCTTGTCAGCCTCAAAACATTCCTGT
TTATTTTCATTTTCATGGTTTTGAAACAATTTATCTTCAAATTTAATAGT
GATTTTTTCACCGATCTGTGAATTCATTTCCTTAATCAGTGAAAACTGAT
CAAAACAATTCGTTCCATCGTTAATATTTACTACACTTTGATTCTTATCA
TCTAGAGATTTTAACTCATCTTCAAGTTTAATGGCGATTTTATAATTTTT
GGGGTCAGTTTCTTCGGTTGATGTAACATCGTTCCCCTTTACATTTCTAC
AAGAATTATTAAAAAGTTCACTTTCATGGTTTTTTAATGGTTCCAAAATT
GCGTTGTCTGGATATCCAATTGATTCATCTTCAAGTTTGATAATAATTTC
CAAATTATTATGAATTGTTTCATCACAACCATGATCTTCTTCTTCTTCAA
TTTTTATTTCTATTTCTTCAATCTCATTCATTTCATTTAAACAAAATGCT
CTAAGATAAAAGAAAAATACAGTAACAGAATTGAAATTATTATGTTTGAA
AAGATTTAAAGCAGTCCTNTAGCAAAAGATTTACTACATTCTCGACATTT
AAAAAGCCTTATACCTTGATGAACAGTTCTTTGATGAGAAGTTAATTTCC
TTTTCTCTGCGAAACATTTACCACATTCTTGACATTTAAAGGCTTTTATA
CCTTGATGGACTGTTCTTTGGTGCCTCAACAAATTTCTCTTTGTAGCAAA
AGATTTACCACATTCTTGACATTTAAAAGGTTTATGATATATCGTTCTTT
GATGTTCTTTAACCGAACTTTTCGTTATTTCGTCAATGTTTGGATTTTCG
ATCTTGTCAGCCTCAAAACATTCCTGCTTATTTTCATTTTCATGGTTTTG
AAACAATTTATCTTCAAATTTAATAGTGATTTCCTCACCGATCTGTGAAT
TCATTTCCTTAATCAGTGAAAATTGATCAAAACAATTCGTTCCATCGTTA
ATATTTACTACACTTTGATTCTTATCATCTAGAGATTTTAACTCATCTTC
AAGTTTAATGGCGATTTTATAATTTTTGGGGTCAGTTTCTTCGGTTGAAG
TAACATCGTTCCCCTTTACATTTCTACAAGAATTATTAAAAAGTTCACTT
TCATGGTTTTTTAATGGTTCCAAAATTGCGTCGTCTGGAAATCCAATTGA
TTCATTTTTCAGTTTGATAATAATTTCCAAATTATTATGAATTGTTTCAT
CACAACCATGATCTTCTTCTTCTTCAATTTTTATTTCTATTTCTTCAATC
TCATTCATTTCATTTAAACAAAATGCTCTAAGATAAAAGAAAAATACAGT
AACAGAATTGAAATTATTATGTTTGAAAAGATTTAAAGCAGTCCTTAAGT
TAAATTGTAGATGAAATTTAAAAAACGACGGCCCAAATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057765-exon-scaffold_298-1575043694:67662..69204 | TCONS_00057765-exon-scaffold_298-1575043694:67662..69204 | Clytia hemisphaerica | exon |
| TCONS_00057765-exon-scaffold_298-1510915933:67662..69204 | TCONS_00057765-exon-scaffold_298-1510915933:67662..69204 | Clytia hemisphaerica | exon |
| TCONS_00057765-exon-scaffold_298-1491911889:67662..69204 | TCONS_00057765-exon-scaffold_298-1491911889:67662..69204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:67662..69204 - |
Blast
BLAST of TCONS_00057765 vs. Swiss-Prot (Human)
Match: ZN248 (Zinc finger protein 248 OS=Homo sapiens GN=ZNF248 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.376e-17 Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = -1
Query: 671 KSSVKEHQRT-IYHKPFKCQECGKSFATKRNLLRHQRTVHQGIKAFKCQECGKCFAEKRKLTSHQRTVHQGIRLFKCRECSKSFA 922
+S++ HQRT KPF C ECGKSF K NL+ HQRT H G K +KC ECGK F EK LT HQRT H G + ++C C K+F+
Sbjct: 476 RSALTVHQRTHTGEKPFICNECGKSFCVKSNLIVHQRT-HTGEKPYKCNECGKTFCEKSALTKHQRT-HTGEKPYECNACGKTFS 558
The following BLAST results are available for this feature:
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