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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057767 ID=TCONS_00057767|Name=TCONS_00057767|organism=Clytia hemisphaerica|type=transcript|length=2634bpRun BLAST on NCBI protein sequence of TCONS_00057767-protein >TCONS_00057767-protein ID=TCONS_00057767-protein|Name=TCONS_00057767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MGILTEGELAPLTFEEIQQYKEFLKTHGIQQFCRHYNKIKDKNYETLKWGRun BLAST on NCBI transcript from alignment at scaffold_298:99859..113533- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057767 ID=TCONS_00057767|Name=TCONS_00057767|organism=Clytia hemisphaerica|type=transcript|length=13675bp|location=Sequence derived from alignment at scaffold_298:99859..113533- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_298:99859..113533- >TCONS_00057767 ID=TCONS_00057767|Name=TCONS_00057767|organism=Clytia hemisphaerica|type=CDS|length=27258bp|location=Sequence derived from alignment at scaffold_298:99859..113533- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057767 vs. Swiss-Prot (Human)
Match: GSH1 (Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2) HSP 1 Score: 567.77 bits (1462), Expect = 0.000e+0 Identity = 290/627 (46.25%), Postives = 407/627 (64.91%), Query Frame = 2
Query: 104 MGILTEGELAPLTFEEIQQYKEFLKTHGIQQFCRHYNKIKDKNYETLKWGDEIEMMMIRLDDEKKSAPLVCKAKDIIGPLTE-AENLNPGNTDTAWRPEMTEWMIESSPGRPYGGNIDHFNTVEANMKIRRDELMSYFNDDKERILSLSTYPRLGCRDVFYPPMENKVEENDATRSYCIPDEVLNQTHIRFRKLAEMMTKRKGRKLFRNAPIFRDTNTPNPFIDPDVPKDSPEDIEVMKPNHVHLDSVCNGLGCGCLQTTFQACNVEEARTLYDQQTVLAPIVMALSASSPCIKGYLLETDTRWENISGLCDDRRADELGEVPLIDKTRRRLYKSRYSSVDMYLSEENDKYNDIDVIYRDEHLQILLDEGIDQQLARHIAHLFTRDPLAVYK---HMLEDQEMDHFELFNSTNWQTVRFKPPPPGANMGWRVEMRPIESQLTDFENAAFTCFVVLLTRVCLSYELNLAIPMSKVEKNMERASKRDAARQEKFFFRTNL-------------GPEETESRNEE---MTMNEIINGG-TTFPGLLNVIQFYLSHLDIDADTRCTISQYLKLISARASGEVLTTASWMRKFIRSHPKYKFDSVVSEEINYDLMKMCTEITSGNVQCPDLF 1921
MG+L++G +PL++EE +++ + ++ HGI QF Y+ +KD++ + LKWGDE+E M++ D E K LV + ++ L E E NP N T WRPE +MIE +PG+PYGG + FNTVEANM+ RR E S ++ + + +++++PRLGC P ++ E A++S PDE +N+ H RF L + R+G K+ N PIF+D NTP+PFI+ D E KP+H+++D++ G+G CLQ TFQAC++ EAR LYDQ + PIVMALSA+SP +GY+ + D RW IS DDR +E G PL R+ KSRY S+D YLS+ +KYNDID+ E + LL EGID LA+H+AHLF RDPL +++ H+ + E DHFE STNWQT+RFKPPPP +++GWRVE RP+E QLTDFEN+A+ FVVLLTRV LSY+L+ IP+SKV++NM+ A KRDA Q F+FR ++ TE EE M+++ IING FPGL+ ++ YL ++++D DTRC+I YLKLI RASGE++T A WMR+FI +HP YK DSV+++E+NY L+ C +I + +CP+L
Sbjct: 1 MGLLSQG--SPLSWEETKRHADHVRRHGILQFLHIYHAVKDRHKDVLKWGDEVEYMLVSFDHENKKVRLVLSGEKVLETLQEKGERTNP-NHPTLWRPEYGSYMIEGTPGQPYGGTMSEFNTVEANMRKRRKEATSIL-EENQALCTITSFPRLGCPGFTLPEVKPNPVEGGASKSLFFPDEAINK-HPRFSTLTRNIRHRRGEKVVINVPIFKDKNTPSPFIETFTEDD--EASRASKPDHIYMDAMGFGMGNCCLQVTFQACSISEARYLYDQLATICPIVMALSAASPFYRGYVSDIDCRWGVISASVDDRTREERGLEPL-KNNNYRISKSRYDSIDSYLSKCGEKYNDIDLTIDKEIYEQLLQEGIDHLLAQHVAHLFIRDPLTLFEEKIHLDDANESDHFENIQSTNWQTMRFKPPPPNSDIGWRVEFRPMEVQLTDFENSAYVVFVVLLTRVILSYKLDFLIPLSKVDENMKVAQKRDAVLQGMFYFRKDICKGGNAVVDGCGKAQNSTELAAEEYTLMSIDTIINGKEGVFPGLIPILNSYLENMEVDVDTRCSILNYLKLIKKRASGELMTVARWMREFIANHPDYKQDSVITDEMNYSLILKCNQIANELCECPELL 619 The following BLAST results are available for this feature:
BLAST of TCONS_00057767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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