TCONS_00057797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057797
Unique NameTCONS_00057797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057797 ID=TCONS_00057797|Name=TCONS_00057797|organism=Clytia hemisphaerica|type=transcript|length=652bp
ATAATTATCACACATCGTTTATATTACAAAACCTTTTCACGCTTGATCGA
CACATGGAAAGTACAATCAATggcaatcattttcaaataagGGGGGTATA
TTCGGGCTTGTGGGAATAAGATTGCCTAAGgagtttgaatatttttaaat
cttAGCGATGACTTTGTCGAATAAACAAAATCTCCAAAGTTTGTAGTAGC
TTGATGAAACATTAATTTCTATCATAATATCTCAAAAATCGGTGTTTCGG
GGCTtcacattttcaatattttttcatcaaaagatgTCGTCACAATCata
tttctgacgtcaaataatatttttcacttggacaattagaagaaaaaaaa
ctgaggaagaaagaaaaaaaacattgaaaaaagaaagaattttcagAGCA
TACCGCTGGAGCTGAGCGCGTCTCAGGTAGCGGAACAAAGCTGAGTATAA
ACTTCAATTTGTTGATCGGAAAAGACTTTTTGAGAAGATGTTGTTACATG
CATGCATTAAGAAGGAAAACGTGAAATTCATAAAGAATTCAATTTACGGT
CAAATAGTGTATGTTTCGGATCACGTTTAAATGAAATTTGTTTGTCAGCA
AAACATTTTATCGATCCAATAGCACATAAGACGTAAAAGACGAAGATATC
TT
Run BLAST on NCBI

transcript from alignment at scaffold_298:18183..18834

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057797 ID=TCONS_00057797|Name=TCONS_00057797|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at scaffold_298:18183..18834 (Clytia hemisphaerica)
AAGATATCTTCGTCTTTTACGTCTTATGTGCTATTGGATCGATAAAATGT
TTTGCTGACAAACAAATTTCATTTAAACGTGATCCGAAACATACACTATT
TGACCGTAAATTGAATTCTTTATGAATTTCACGTTTTCCTTCTTAATGCA
TGCATGTAACAACATCTTCTCAAAAAGTCTTTTCCGATCAACAAATTGAA
GTTTATACTCAGCTTTGTTCCGCTACCTGAGACGCGCTCAGCTCCAGCGG
TATGCTctgaaaattctttcttttttcaatgttttttttctttcttcctc
agttttttttcttctaattgtccaagtgaaaaatattatttgacgtcaga
aatatGATTGTGACGAcatcttttgatgaaaaaatattgaaaatgtgaAG
CCCCGAAACACCGATTTTTGAGATATTATGATAGAAATTAATGTTTCATC
AAGCTACTACAAACTTTGGAGATTTTGTTTATTCGACAAAGTCATCGCTa
agatttaaaaatattcaaactcCTTAGGCAATCTTATTCCCACAAGCCCG
AATATACCCCCcttatttgaaaatgattgccATTGATTGTACTTTCCATG
TGTCGATCAAGCGTGAAAAGGTTTTGTAATATAAACGATGTGTGATAATT
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036427XLOC_036427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057797-exon-scaffold_298-1491911889:18183..18834TCONS_00057797-exon-scaffold_298-1491911889:18183..18834Clytia hemisphaericaexon
TCONS_00057797-exon-scaffold_298-1510915933:18183..18834TCONS_00057797-exon-scaffold_298-1510915933:18183..18834Clytia hemisphaericaexon
TCONS_00057797-exon-scaffold_298-1575043694:18183..18834TCONS_00057797-exon-scaffold_298-1575043694:18183..18834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:18183..18834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.400426	0.54667	0.725413	0.266139	0.323998	0.170685	0.308886	0.771135	0.674863	0.501556	1.21706	0.746708	0.319573	0.719072	0.500225	0.780827	0.480957	1.04755	0.0851323	0.445424	0.774309	0.566521	0	0.250444	0.0859839	0.460432	1.31775	0.23439	0.355553	0.271689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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