TCONS_00057833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057833
Unique NameTCONS_00057833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057833 ID=TCONS_00057833|Name=TCONS_00057833|organism=Clytia hemisphaerica|type=transcript|length=781bp
TNAAAGTGAAAAAGTATTTCAGAGTCATTGTGTCTAAAGGAAACACAACT
AAAGGATATCCCCCGGGAAAAGTGACCATCGTCCATGCGAAGGCAATAAC
CGATTGTACTCAATTTGCTTTGAAGACGGTACAATTAATCAAGTACATCA
TGGAATTGATTTTGATGCCAAGGAAGAGTACCTTATGATGGACACAAGGC
GAGCAGCTATCTAGTGGAGTTTACGGACAGATCCAAGAGGAGGGTGGCAT
CCAGCTGTTTCCATATCCTTTCACAATACGAAAGTTCagaaatgagtgaa
aaaaagcTGTTGTCATGAAAACAAGACAGGAGGAGCTGGTTCTCAACTTG
CAAGCTATTATGTTTATCAAGATATGAGATTGATGTTGTATACCAATTTT
GGAGATTATTTTCTACCAAAATGTGGTTATGTGAATGTTTTGGTAAGCAT
ATCTTCCAAAATGTAATTTCATACTCTTGTTCCAAccaaaacttttgatg
aaaccCTGGGGTGTGCTTATTATGCctattaaaaatttcaaatttttgta
aattcatttTGATCAGAAATTGCAGATcacttgatttgattttttcagcA
AAACAAAATGCATGCGCTTCTGTCAAATATCAACCTTGTAatataaaaat
gattttacaaTTTCACGTATTAACATTTTATTGATGGGCTTTTATAGAAA
TTGTCGGTATTGAAGTTATTCATTTTTGAGCTTCACAGCCCCCTGGATGT
ATGGCTTAAAAATAAAGATCTCCTGATGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_299:156416..162937-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057833 ID=TCONS_00057833|Name=TCONS_00057833|organism=Clytia hemisphaerica|type=transcript|length=6522bp|location=Sequence derived from alignment at scaffold_299:156416..162937- (Clytia hemisphaerica)
TNAAAGTGAAAAAGTATTTCAGAGTCATTGTGTCTAAAGGAAACACAACT
AAAGGATATCCCCCGGGAAAAGTGACCATCGTCCATGCGAAGGCAATAAC
CGATTGTACTCAATTTGCTTTGAAGACGGTACAATTAATCAAGTACATCA
TGGAATTGATTTTGATGCCAAGGAAGAGTACCTTATGATGGTAAGATGAT
TACTTGTGTACTGTTATTTCGCATCAATAATCTGCTTACTCTCCAGGTGA
TTAAGGCAGGTTCTTTCCGGTCCAAATTCTTTCAACGTTACAAATCATTT
TCGTAGGCTCATTTTGGGCTAAAGAAAAAGGGTATAATTAAGTAGAATAA
GATTCAGTCAAGGCAGATGTTTTATGATTTAGAAATTTTGGATAATTTAT
TCAAAACCTCAATTTTGCTCTATTTTGATGAAAATCTTTACAATCATGAT
GGCATCAGCATTTTTTAAGGATTTCAGTTTTTCAGCTGAAAAGTGATGAC
ATGATCAAATTAAAAAAAAAAATTGTATTCTGATGGTCAAAATTTCAATT
TATTTCATTAATTATGCCGGCAATTCTGTAGCAATATTTAATTTTTTGAA
TTTTTAGTTCAATTCAATCTTTGATCCTGATATTTAGTTCAATTCAATCC
CTCATATTTGTTCAATCCCGATATTTGTTTCAATCCCGATATTTGTTTCA
ATCCCGATATTTGTTTCAATCCCGATATTTGTTTCAATCCAATCCTTCAT
ATTCAAATTCAATACTTCATATTCAAATTTCATCCTTCATATTCNATTAC
TTGTGTACTGTTATTTCGCATCAATAATCTGCTTACTCTCCAGGTGATTA
AGGCAGGTTCTTTCCGGTCCAAATTCTTTCAACGTTACAAATCATTTTCG
TAGGCTCATTTTGGGCTAAAGAAAAAGGGTATAATTAAGTAGAATAAGAT
TCAGTCAAGGCAGATGTTTTATGATTTAGAAATTTTGGATAATTTATTCA
AAACCTCAATTTTGCTCTATTTTGATGAAAATCTTTACAATCATGATGGC
ATCAGCATTTTTTAAGGATTTCAGTTTTTCAGCTGAAAAGTGATGACATG
ATCAAATTAAAAAAAAAAATTGTATTCTGATGGTCAAAATTTCAATTTAT
TTCATTAATTATGCCGGCAATTCTGTAGCAATATTTAATTTTTTGAATTT
TTAGTTCAATTCAATCTTTGATCCTGATATTTAGTTCAATTCAATCCCTC
ATATTTGTTCAATCCCGATATTTGTTTCAATCCCGATATTTGTTTCAATC
CCGATATTTGTTTCAATCCAATCCTTCATGTTCAAATTCAATCTTTTTCA
TTCAAATTCAATCCTTCATATTCAAATTCAATCTTTTTCATTCAAATTCA
ATCCTTCATATTCAAATTCAATCCTTCATATTCAAATTCAATCNTTCAAA
GGGCAGCTACTAATGCAAGTAGCATGTTAAGTGATAAAATTCATCAGTTA
TTATTATCCCCGAAAAAAAAGAAAAACATAAAGTACGCGGCTGGGCGGAA
GAATTTGAATAAAGAAGATTGAATTTGAATAAAGAAGGTTGAATTTGAAT
AAAGAAGGATTGAATTTGAATAGGGAGGATTGAATTTGAATAGGAAGGAT
TGAATTTGAATGAAAAAGATTGAATTGAACAAAATACGAAGGATTGGATT
GAACCAAATATCGGGATTGAACCAAATATGAGGTTTTGGATTGAAATAAA
TATCAGGATCAAAAGATTGAATTGAACTAAATATCAGGATCAAAAGATTG
AATTGAACTAAATATTCAAAAGATTGAATATTGCTACAGAATGGCCGGCA
TGATTAATTATATCAAAATTTATAGAGTTTCAATTTTTATGATCATCAAA
ATAGCAAAAATCTATGCAAAATCAGATTTTTATTTCAACCGTAGTATTTC
GAGGTTTAATAGAAAATAGCACCTATCAATCATTTTATTATCACTTTTTC
AGCCTTGGGGCAGGCTGGAGACTTCAAAAAATGGTCTGATATATCAAAAA
ATGGTCTGATATATCAAAAAATGGTCTGATATATCAAAAAATGGTCTGAT
ATATCAAAAATTTCCTTTTGGTGTTTACAATTGCGCCTACAAATAATTTA
AATAATACTGAAGTTGAGCAAGTGCGGTTAGCACGTAGGACGTTTTTATA
CTCAGAATTCAACTCAGCTCACTTTACTTTATTTAAAAAAAAGAAAATCA
TGTGATTAGTTGGTTCATGTAGGCTTATCTGCTTTGGACTTTTTAATCTA
AACTTGAATGGAATGGGTGTTTTCAGTGTAGCTGACAGAGTGACCAATCT
TTCACAATGTATAATTGAAATACGAACCTCTTGGTATGTTTTTATTACAG
GACACAAGGCGAGCAGCTATCTAGTGGAGTTTACGGACAGATCCAAGAGG
AGGGTGGCATCCAGCTGTTTCCATATCCTTTCACAATACGAAAGTTCAGA
AATGAGTGAAAAAAAGCTGTTGTCATGAAAACAAGACAGGAGGAGCTGGT
TCTCAACATGCAAGGTTAGTTCTTGGTTCATAAATTGCCTTCTCTTTCGA
AATTTCCTATACAGAAGGATCTCAATAACTTGAATCGTGTTTTGCGCAGT
TATGTAATTTTTGCGCAGATGTGTAATTATTTTGCGCAGTCATGTAAATT
CTGCGCAGATAATGTAATCATTTTGCGCAGATATGTAATTTCCAAGCTGC
GCAGTTATGTAATTATTTTCTGCGCAGTTATGTAATTAGAACGGTTTTAT
GNAACCTCTTGGTATGTTTTTATTACAGGACACAAGGCGAGCAGCTATCT
AGTGGAGTTTACGGACAGATCCAAGAGGAGGGTGGCATCCAGCTGTTTCC
ATATCCTTTCACAATACGAAAGTTCAGAAATGAGTGAAAAAAAGCTGTTG
TCATGAAAACAAGACAGGAGGAGCTGGTTCTCAACTTGCAAGGTTAGTTC
TTGGTTCATAAATTGCCTCGAAATTTCCTATACAGAAGGATCTCAATAAC
TTGAATCGTGTTTTGCGCAGTTATGTAATTTTTGCGCAGATGTGTAATTA
TTTTGCGCAGTCATGTAAATTCTGCGCAGATAATGTAATCATTTTGCGCA
GATATGTAATTTCCAAGCTGCGCAGTTATGTAATTATTTTCTGCGCAGTT
ATGTAATTAGAACGGTTTTATGATTACATTTTTGTGAATTTCAGTTATAA
TATGTGAAAAAAAATTCATCTTGTGGACTTATAGTTTTTTGTGAAGTTTA
TCTCAGGAGACATGTTATATACCACTTAATATTCAACGTCCACTTAACAT
TCATTTAACGTCTTTTTTATGATAATTAATGATTGGGATTGAATTTTTAA
ATGAAACTTAGCACAGTAGGGCTTTGGTACAAACCACACCCTTTACAACG
TCCATTTAACATCCATTTAACGTCTTTTTCGTGATAATTACTGATAACGA
TGGAATTTTGAAATGGAATTTAACTTAATCCATTTAACCTCTTTTTTCAT
GATAACAAGCATTGAATTTTCAAATTTCGATGGTTTATACATGTATTCAT
TTCTAGGTTATTTAGATGTATTTTCAAATAAGGTTTCACACAAGAGATTT
CGAGTATTACAGTATAACTTTTTTGAAATGTGAAAACACTATGAAAAAGT
GAAACACTTGTGTTTTTTTTTCGTTTAACTTTTTATTTCAAACACACGTT
ACACACGTTTTCAAAAAATATACAGAAAATTATTTTCAATATCAACAGAA
TGAACCCTGATAATATCAATCCAATATACCCCTGTGTCACGTCTCCGCTG
GAAGAAAACGCTTTAAATTCCATCCCCATTGGAAAAAATGAAATATTACA
CTACTAGGTCAAAAAACATTGACTAGGCCCATGTTCAATGTATTTCATCG
ACTGTCGTCAAGTTTTATTTACTGTCAATTGTAAATTATCGACAACAAAT
TTTTTGCATCAACCATCAATATTTCCTTTCTTACAGTCAATGATTTGTTT
AGACTGTCAATTATTTTGTTGGCAGCTGTCATTGTAAGTAATGAACGGTC
AATGCAAAAAATTGTCAATATATTCTTTTAATTTTCAAGAAAATTAATTG
ATCAGTGTTAAACATTTTTTGTCAATTTGATTTTGACAGTCAATAAAACT
TGCTGACAGTCAATGAAAAACATTGAACATGGGCCTAATCAATGTTTTTT
GACCTACCTTAAGGGAATTAATTCTCGCGGCAACTAATTTTTGCGAGACA
GCTTCCCACGCAAATAATTTAATTTTTGCAGGACTTATTTTCGACTGTAA
ATTTTCGCGAATTGGCGAATTTTTTCAGATTTTCAGATTTTTTGTTAGTT
TGATTACGTGATTTTGTCTGTACAGTAGAGTCTCCACAACTCAAACGGCT
ACGAGGAATGAAAATTATTCAAATTATAGAGATATTCGAGTAATGGAGAC
TCATTCAAGAGAGTTTCTTAGCTGAAAGAATTTTTAGCGTAAAAAACTTA
ATTTTCGCGAGGGATTATTTTTCGCAACAAAGGCAAAATTCGCGAAATAT
AATCCCCGCAAAAATTTAGACCCTTAAGGTAGTAGTAGTGTCCAGTGTAA
AAATAAATCTTAATTTCCCATCCCTACTGGGTACTTGTGATTGAAAACAC
TAAAAATCAATATCCCAATCATAAAATGAAAGGGATTTTCACATCCCCAT
ATTTTTCCTCAATTTATCCCCCTTGGCGATAATAAAAATTATAAAAAAGA
CGTTGGACGGATACTAAATGGAAGTTACATACCAGGGGTCTATCATAGTT
TCATTTAAAAACTTTCTTAGAAGCTATCATAAATGGATGTTAAATGGACG
TTATCATTTTCAAAGGGTGTGGTATATACCAAAGTCCTATCATGCCAAGT
TTCGTTTAAAAATTTATTCCCAATCATTAATTATCATGAAAAGACGTTAA
ATTGATGTTAAATGGACGTTGTCATTTTCAAGTAGTGTGGTATTATACCT
AAGTCCTACCATGCCAAGTTTTATTTAGAAATTTAATCCCAATCATTAAT
TATCATGGAAAAGACATTAAATGGATGTGAAATGGACGTTGTCATTTTCA
AACGGTGTGGTATGTACCTAAGCCCTACCATGCTAAATTTCATTTAAAAA
TTCAATCCGAATCATTAATCATTATGAAAAAGACATTAAATCTGATTAAA
TGGATGTTAAATGGACAAAATCATTTGTAAAGGGTGTGGTATGTACTTAA
GCCTTATCGTGCTAAATTTCATAAGATAAAAGTTATTTTACATGCTGACT
GAGATTCGCAAAAATATTATCATAAAACCGTTCGCTAATTACATAACTGC
ACAGAAAATAATTACATTGCTACGCAGCTCGAAAATTACATATCTCCACA
AAATAATTACATATCTGTGCAAGGCAATTACATATCTGCGCAGAAATTAC
ATATCTGTGCAAAAATTACATAACTGCGCATCTCAAAAAATCTCTATATA
TCTCAAATTGTTCCCTGACTTGTACAGATTTAACACCCCTTGTTTATTTG
ATGGGTTTTTTTTTTGAATTCTCATCTTATTTTCAAAGTAATAACATGAG
ATACACAGGTTTAGTTAAATTTAAAAATAGTAATTCCCAAAAATGTGACA
GAGCACAATTTTTGAAGAAAAGTATATTTTGTTTTTAGGATTTTCTTATT
AGAATTTTCTGATTTCTTTTATTTTTTATTATAAGACTAATTAAATAATC
CATCATGACACATGAATTTTCAGCTGGGATTTGGAAATCTATTTATATGT
CCCTAACTAAAGTTTCAGCCTTTTTAAAGGTTTTTTTTAAGGTATTCCAA
TCAAATTTTAGGTTTTAAAGCATTTTATTCTTGTTTTGGCATTTTCTTTA
TATTTTAGTGCCAATTAAATTTAATGACCATCCTTCTTCTCCTAGATAGT
GCCTCAATATTTTTAGGGTTCATCTGTTCTCATGGATTCGTAGTTTCAAT
CTTATGTTCAATGTTGAGTATAACTTGTTTCTTCTTTATTCATAGCTATT
ATGTTTATCAAGATATGAGATTGATGTTGTATACCAATTTTGGAGATTAT
TTTCTACCAAAATGTGGTTATGTGAATGTTTTGGTAAGCATATCTTCCAA
AATGTAATTTCATACTCTTGTTCCAACCAAAACTTTTGATGAAACCCTGG
GGTGTGCTTATTATGCCTATTAAAAATTTCAAATTTTTGTAAATTCATTT
TGATCAGAAATTGCAGATCACTTGATTTGATTTTTTCAGCAAAACAAAAT
GCATGCGCTTCTGTCAAATATCAACCTTGTAATATAAAAATGATTTTACA
ATTTCACGTATTAACATTTTATTGATGGGCTTTTATAGAAATTGTCGGTA
TTGAAGTTATTCATTTTTGAGCTTCACAGCCCCCTGGATGTATGGCTTAA
AAATAAAGATCTCCTGATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036456XLOC_036456Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057833-exon-scaffold_299-1575043694:162748..162937TCONS_00057833-exon-scaffold_299-1575043694:162748..162937Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1575043694:159946..160109TCONS_00057833-exon-scaffold_299-1575043694:159946..160109Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1575043694:156416..156842TCONS_00057833-exon-scaffold_299-1575043694:156416..156842Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1510915933:162748..162937TCONS_00057833-exon-scaffold_299-1510915933:162748..162937Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1510915933:159946..160109TCONS_00057833-exon-scaffold_299-1510915933:159946..160109Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1510915933:156416..156842TCONS_00057833-exon-scaffold_299-1510915933:156416..156842Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1491911889:162748..162937TCONS_00057833-exon-scaffold_299-1491911889:162748..162937Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1491911889:159946..160109TCONS_00057833-exon-scaffold_299-1491911889:159946..160109Clytia hemisphaericaexon
TCONS_00057833-exon-scaffold_299-1491911889:156416..156842TCONS_00057833-exon-scaffold_299-1491911889:156416..156842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:156416..162937 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.648973	0.46505	0.792883	0	0	1.00531	0.470758	0.421417	2.57862	0	0	0	0	0.0988994	0	0	0	0.444336	0	0.860926	1.81724	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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