|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057848 ID=TCONS_00057848|Name=TCONS_00057848|organism=Clytia hemisphaerica|type=transcript|length=313bp
AAACTGTGGGATAGCAGAAGAGAAAGTGGAGAAAGGCATCGTCGTGCCGT
AAATGACGAAGATGATGATAGTTGGGaacaaatccttaaaatcgatCTTG
ATAAATTCAACCATTACATAAAAACAAAATCGAAGGAAACCTTTCAAGAA
GAAATCAACCGAGCTCTTTTGGGATTCCTTTCAAACCTCCCCTCTCAACA
ATTGTGCAAACTCGTCAAAAACTGTGAAAAAAACTGCGAGGAAGAGGAGA
AGATagttttcggcgaagaaaaaatcgTGGAAAAGACACGAACCAAGTGC
GTCAGAGGACCGC Run BLAST on NCBI transcript from alignment at scaffold_3:93519..94701+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057848 ID=TCONS_00057848|Name=TCONS_00057848|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_3:93519..94701+ (Clytia hemisphaerica)
AAACTGTGGGATAGCAGAAGAGAAAGTACTTTACAGCACTTCAAATGAAA
AATACCTTTATTTTTTGAGTGGTCTGCCAATTTTGATCTTTTCTCTATTT
GTTTATAATTTCAAACCAGGACTGCTATTCTCTCTGTATGGctcaatttt
ctaaatttgtatttataaaatttttacagagCGTGAAGCGATAACACACA
TGCTTCATCAAAAGATGGATAGAGTAATATACTTATTAGTGATTTCCTTT
GgatttctttctgtttataATTTTTGGCGAGATTTAGAAGTGAACTCAAG
AGTCATCCAACTGGAACAAAACCCTCAAGGTATGTCAACTTTCGAAAGAT
TATTTGTCACTTTGATCgttcattttcttgaaattcagCTGTCATCCTGT
TTGTTTCACCATTTTTAATTGCTAACCGTCAAACTGCTCTTCtttttttg
gtgtgtttcgGCCTTAgagagtggtcagaaagtatctactagggggagGG
GAGTCTataaaaatttcatgtcattttAAGTGGCCTATATCAGGAGAGGG
GTGCCAAAAATATATTGACTGGTTAGGGAGGGGAGGGgcttgaagttttt
tttgaggATATCATAAGGAGGGCTGCGTATATTTTtggcaatttaaaaaa
aaatcctcCACCTCACACTAGtggatactttctgaccactccctaatcat
tttttcatctatAAAACCTTTTTTAGGTGGAGAAAGGCATCGTCGTGCCG
TAAATGACGAAGATGATGATAGTTGGGaacaaatccttaaaatcgatCTT
GATAAATTCAACCATTACATAAAAACAAAATCGAAGGAAACCTTTCAAGA
AGAAATCAACCGAGCTCTTTTGGGATTCCTTTCAAACCTCCCCTCTCAAC
AATTGTGCAAACTCGTCAAAAACTGTGAAAAAAGTAAGCACCATGTACAG
TAGATATTTCTTtttagaatttcaattttttaccaTAAGAATTACTCATA
AAAGTAAGCAGAAATAAGAATTCAGTTTTCACTTTTTCCGAACTAACTTA
ATTAAAAAAGTAAGGTAATATCTAAAATGTTATGAACTCATTCTGTCAAC
AGACTGCGAGGAAGAGGAGAAGATagttttcggcgaagaaaaaatcgTGG
AAAAGACACGAACCAAGTGCGTCAGAGGACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057848-exon-scaffold_3-1491911889:93519..93543 | TCONS_00057848-exon-scaffold_3-1491911889:93519..93543 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1510915933:93519..93543 | TCONS_00057848-exon-scaffold_3-1510915933:93519..93543 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1575043694:93519..93543 | TCONS_00057848-exon-scaffold_3-1575043694:93519..93543 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1491911889:94245..94451 | TCONS_00057848-exon-scaffold_3-1491911889:94245..94451 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1510915933:94245..94451 | TCONS_00057848-exon-scaffold_3-1510915933:94245..94451 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1575043694:94245..94451 | TCONS_00057848-exon-scaffold_3-1575043694:94245..94451 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1491911889:94621..94701 | TCONS_00057848-exon-scaffold_3-1491911889:94621..94701 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1510915933:94621..94701 | TCONS_00057848-exon-scaffold_3-1510915933:94621..94701 | Clytia hemisphaerica | exon |
| TCONS_00057848-exon-scaffold_3-1575043694:94621..94701 | TCONS_00057848-exon-scaffold_3-1575043694:94621..94701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:93519..94701 + |
Blast
The following BLAST results are available for this feature:
|
