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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057868 ID=TCONS_00057868|Name=TCONS_00057868|organism=Clytia hemisphaerica|type=transcript|length=780bp
CctggttctttttttttttcatgaaggAAACTCAGAACTTTAAAGACTAC
CAGATCAGCACATTTAATTcagcattttcaaattcaacaaattattcaaa
aagtaaaagattGCAACAAAAaaagccaATTATTGGTATACAAATTATAG
AATGTCAAATAACGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAA
ATgtgaacaaaacaaaaacatctaGACCAAAGTTATCCTCTGATAGAAAG
CCTAAAAAATGTAATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGC
AAGTAAACGAAGAGAGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTC
GATGTAGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAAT
AAACATGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatatttt
ggctaAAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCG
AAACACTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAACTCCC
TTAAACTCTTAAAATTaaagagattttttaaattataagATTGTATATAG
GTAATGTTCTGCACAATATATGaattaatattttgattttatgatGGGTG
tatattgttttgatttatttttgtactGTATAGAAAAAACTTTGACTTAA
TAAATGCTTTATGAAGTGTGTATTTTACATCAAACTTaagtttttcataa
attttgtcCACTCTCTAAATTAAATCTTgc Run BLAST on NCBI transcript from alignment at scaffold_30:7490..15864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057868 ID=TCONS_00057868|Name=TCONS_00057868|organism=Clytia hemisphaerica|type=transcript|length=8375bp|location=Sequence derived from alignment at scaffold_30:7490..15864+ (Clytia hemisphaerica)
CctggttctttttttttttcatgaaggAAACTCAGAACTTTAAAGACTAC
CAGATCAGCACATTTAATTcagcattttcaaattcaacaaattattcaaa
aagtaaaagattGCAACAAAAGTAAGATATTTTTCCCAATATCAGCCATC
AGCTTTGGTAAGTTTtctgtgttttcattttatttttagatgaaaaataa
gcacgaccctgccgattccccggGGAATCACGGTAGAGCGCggtggtttg
agttttctggaagccttatttattaagctgtgcatttttctgatagtgga
ttgTTAAATACAGCAGagttagggcaaaagagggtaTTTCTCAAACAAAA
GCGGCATTCAatgatgcaagagttagattgaTGGTGTCTATTGAATAGCA
AACTAATCTTACAATAATAACTGGTTTGgaggtcaatattttacgtATTG
ACCAAGAAAACAGTTATATTATTGTGTTTATTAACTGGTGAACATTCTTT
GTGCGTTTCTGGccaaaaaaatgcattttccaCTCATtttaggaccctgc
cgacgcaccggacttaacgaacaccggacacgcgaaagtccggtgtaaaa
tgagaatttttttaccaccggacaatttctacaccggattTAAGGAAGTC
AGGTGTCCGGTGTcgaagaaggatattttttcccaacGGACAATCAatac
accggacatgaccagtccggtgcgtccggtgtttcttaattttttgtttc
ataaatgtccggcgtccaaaattccctgtatgcaacaccggactgacacc
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAccccggactga
caccggacttattgcgtccggtgtagcgaaaggatactttttgccaccgg
acaaatacaccggacagtccggtgcgtcggcagggtcctctcattttcca
tgattttttcgtttcttttttacccaatattttctttgatttattcTGAC
GTCACTTTGTTATGAGAAGTCATTGCAACGTCAGCTTTTACTTCAACCAG
TTAATAATATCCAGTACAAACTGAATAAATTATCATGTACCTAGGTGCTG
TGTTGTAAATGACAAATCTtaagttttcattaaaaaaatttctactgGGT
TTATTAGTTATTCATAAGACGAAgttctcccaaacaactattttttgatt
ggaaaaaataaaacatcGATCAATACGGTGATTATTTGGCAGATTCATAA
GTGTCTGtgattaaacaaaataaaataataattctaTTTCCTTGTTCTTC
ATGCTCGCAAATTCAAGAGtttttctctttgatcttttattgGTCTCTTT
TGTTGATTGCTTGTGTGTCATCAATGACTCCCGAGTCATTTCTTGAAATG
GAAACACACAAATTTTACCAAGCTGAATATCTGTATATaatatagacctt
ttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGCATCAAAA
TAGCGGTGAGAAAAAATTAGTGTACACTTGTTATAGTTATGCCTTGAAAT
GTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTACATCT
TTATAAGCAAAAGGGTCTATAAccaatatatataaaaaagaaagccaATT
ATTGGTATACAAATTATAGAATGTCAAATAACGTTTTCTGGTTTGACTGT
GCTGCAAACGATGAGGAAAATgtgaacaaaacaaaaacatctaGACCAAA
GTTATCCTCTGATAGAAAGCCTAAAAAATGTAATTCAGTTGAAGAGATTC
AGAAAAAGATTGACGAAGCAAGTAAACGAAGAGAGgtaattaaaaatgtt
taaaatgttGTATCATTCCATTTTACTATAAAATAATAAGCAGACAGGCC
ATTTCTCATGTCCTTTTAGTGTCCGGTTATCGGACACTGCCCTTCCCGAA
TTTGCAaagattttggtaaaaacagcctttttggTGAAAAACAGCCTTAT
AATACCATACTTTTTCTAACTTCTAtttatcataaaaaaattcactccat
taagaattagtgaataaggctgAACCTGTGTGGAAACACGTGGGAGAGGC
CAGTATTTTTCNATTTTACCAAGCTGAATATCTGTATATaatatagacct
tttgctaatcaggatgTCATGTTAGGATAGTTAAAGACTCAAGCATCAAA
ATAGTGATGAGAAAAAATTAGTATACACTTGTTATAGTTATGCCTTGAAA
TGTGTTTTTGTATTATTGCtgaagtttttaattattttaaacaTTACATC
TTTATAAGCAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTCTGATATCAATAAAGATAGTTGACATGCTACCGAT
ATTTTGATTGTTCCAAACCATTCCCCGCTCGTGTGCAGTCTGACACGGCA
CAAACACTCCCAGTTATTCAAAGCGATTTCTATTCCCCTTGGGGAATTAA
AGTTCAATTGAAAATCTGgtggaaaaacaatttttcaattcgaaCTCCTG
GCTATTTGAagtaaattcttaaaaattatcCCCCTTGGAGCTTTGAATAA
CTGGAGGTCTACtgtatctttttcaaaaagactcccaataaaaataattg
aatgCCTCTGTAACTATAATAGAAGCATGTGCTTAATCCCAATTTCTACC
AAGCCTTAAAAATATGAGATTTCTGCATGCTGcattatttattatttcaa
ttattctgCACtacagtaaaatcaaaaaaaattcaacacaATAGCAAAGA
ATATTTTCATACCTTTTTGACGAGATATGCTTTGCTTGTTGCATCAGATA
AGCAATAGAATGAAGCTACAGCATAACTTAAACCGACAACTCTTTTTGAT
ACAAATTGTCTAAAAGCTTCTCCAACCTCGTTGGCATAACCTGTTTGGAA
agtaaaataaaacatttttgtgTTATTTCAGTTAATTTGCACTGGTCTTT
AGGGGGAGTTAATACTGAAACNCTTGTgttatttcagttaattttcactG
GTCTTTAGGGGGAGTTAATACTGAAACATCCTGTTGGAAGTAAATATCTC
AAATAAATTATGAATATAATTTCAGGTGCTAGCAAAATTTCAGATTCCAg
gcaatttaatttaatttaatttaaactTCTAAGAAATTTATACGCTTTTA
CAACATAGCTGTTACCAAGGTACCTACAAAATAGTTTATCCCGTTTGTAC
TGGCTGGAGTATTTTGTTATTGAATAGACCGGTTGACAGGTTGACCGCCA
CGTTCTCCCAAAAACTATTTTGCAGGGTTTGAGGATTTAGCAAGGATGAA
AAAAACCATCCCAGTAGAAATACGCAGAACTACGCAGAACACTTGCAAAC
TCCCTAATgggggaaaaaaatttcaacctgtcaatcattttgattttctc
aatatccttttattttcatttctggaacTTTTGTCTTTTATTGCATTtgc
aaaaacaggaaaaatacaaaagttgtTACTGCTGATTTTTCTCCTGCTTT
TCCGGGACTTTAGCTAAAGTGCTTGTGTGCAGCATtaggtacaaagtcca
aattaaaaaatttggtttgacCAAGGGCTGTTATACCACCAACAACTAAC
TGCACTGCacacacaaaaaaacaaaaattaaaaaagatacCATCAGATCA
TTATTGGAAAAACAGTATACCTAAGTATCTTATTGGAGTATCTCTGAAAT
AATCTATCTCATCATCTTTCTGCTTTGCTCTGGTCTGATCACTCATTTCC
CTCGAACAGCTGCTAGTCTTGGTCTGATGATGACCTGGTCAAAGACAGAC
AGAAAAAAAGGACCAAAGTCAAGTTAGCGACACATTCAGCGACACATTCA
GCGACACATTCAGCGACACTTTCGCTTTCAGCGACACTTTCAGCgacaca
ttcgaattcttttgtatttttcatgctGAAGGAGAGAATTCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcatttgagggctatgcatg
ttagccttcactgatgcaagttaccctttttcacggtagtGGATTGTTAA
ATACAGCAGAGTTAGGCCCTGACATTTAagttagggcaaaagagggtaTT
TCTCAAACAAAAGCGGCATTCaatgcaagagttagattgaTGGTGTCTAT
TGAATAGCAAACTAATCTAACATCTAATACAATAATAACTGGTTTGGAGG
TCAATACGGCAAAATATTGACCGCAGCCGAAGTacagaccgagcttgcga
ggtctgTGTGCAGGAtaaggtcaatattttacgtATTGACCAAGAAAACA
GTTATATTATTGTGTTTATTAACTGGTGAACATTCTTTGTGCGTTTCTGG
Gcaaaaaatgcattttccactcattttccatgattttttcgtttcttttt
tacCCAATATTTTCTTAGATTTATTCTGACGTCACTGCAACGTCAGCTTT
TACTTCAACCAGTTAATAATATCCAGTACAAACTGAATAAATTATCTTGT
ACCTAGGTGCTGTGTTGTAAATGACAAATCTtaagttttcattaaaaaaa
tttctactgGGTTTATTAGTTATTCATAAGACAAAgttctcccaaacaac
tattttttgattggaaaaaataaaacatcGATCAATACGGTGATCACAAA
ATATTTGGCAGATTCATAAGTGTCTGtgattaaacaaaataaaataataa
ttctaTTTCCTTGTTCTTCATGCTCGCCAATTCGAGAGtttttctctttg
atcttttattgGTCTCTTTTGTTGATTGCTTGTGTGTCATCAATGACTCC
CGAGTCATTTCTTGAAATGGAAACACACAAATTTTACCAAGCTGAATATC
TGTATATaatatagaccttttgctaatcaggatgTCATGTTAGGATAGTT
AAAGACTCAAGCATCAAAATAGTGATGAGAAAAAATTAGTGTACACTTGT
TATAGTTATGCCTTGAAATGTGTTTTTGTATTATTGCtgaagtttttaat
tattttaaacaTTACATCTTTATAAGCAAAAGGGTCTATAAccaatatat
ataaaaaagaaagccaATTATTGGTATACAAATTATAGAATGTCAAATAA
CGTTTTCTGGTTTGACTGTGCTGCAAACGATGAGGAAAATgtgaacaaaa
caaaaacatctaGACCAAAGTTATCCTCTGATAGAAAGCCTAAAAAATGT
AATTCAGTTGAAGAGATTCAGAAAAAGATTGACGAAGCAAGTAAACGAAG
AGAGgtaattaaaaatgtttaaaatgttGTATCATTCCATTTTACTATAA
AATAATAAGCAGACAGGCCATTTCTCATGTCCTTTTAGTGTCCGGTTATC
GGACACTGCACTTCCCGAATTTGCAaagattttggtaaaaacagccccCA
GCccactagggcaagatgggttacggggatgctccgctggtcagggtacc
ttttttaacctccacgagtcacaggtagggttgcaaaaacaccaaaatag
aaaaatcagtccctcgtagggtgcctttttttggaaaatttgggggaaaa
gtagaaaatttgagaaaattttgNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAA
ACAGCCTTTTTGGTGAAAAACACAAGAAAGGTGCCCTTTTTGACTACCAC
CAGGAGAcactgccctgcctttctaaaatattgcCTGGCAGATATTCATT
CAGTGTATTTTCATAAtatcaacaaaacaaagaagaagTGTAGGTACCTG
AAAAATATTTCTGTTTCTGGTCAGTTGGCACAtcaatatttctttgtttt
ttttaaagtttgatttGCAAGGACGTTATTgtgttatattttttaaaata
taatgCAATGCAATTTTATAAATGATGCAAAAAATAATACCATACTTTTT
TTAACTTCTATTTATCATAATAGAAGACTGAGTGTTTAGAAAATGGATTT
AGGGATAGAAATCTCAATACCATACCATTGCAACCAACGCGAGTTCCAGT
ggacttgaaataaaaatattttttggtttaCAACTGTTGGGTGGTTGAAA
TTGGCAATAAGATGACATAATCTAATAGGTGCCTGTCAAACTATCATTTa
ccatttttattccaaatatACATCCTTTTTGGATTTTCtatctgaaaatt
attttcatgtcCCCTCAGCTACTCTTTAGGCTATCAAACTTTATTCAGCT
TTTACTAGACGCCTGGTAAATTATTAAAAGAGATTATCTACAAGTACAAC
AAAACAGTGTGCTTCCCGCAACGTAAACAGTGAACAGTGCCAAAAGTGTc
catatcatttgaaaatcattcAGCTGAATTTTTTCTTAGACAAGGCTCTT
TACTTTTTCAGGAGCAAAATAACAGAAGATCTCAAAATGCTGCTCGATGT
AGAGAAAGTATGCTTGCTCTTGCTCAAAAAATGGACAAGTTAAATAAACA
TGAAACTGCCAAAAAAACTGGAAATATcaacaatgaaaatattttggcta
AAAGAGAATATTGTAAAATTGCATCTGAAGTATCAATGCAATTCGAAACA
CTTTCCAGAAAGTACGAGAAGGATTTGTCAAGCTCTTAAACTCCCTTAAA
CTCTTAAAATTaaagagattttttaaattataagATTGTATATAGGTAAT
GTTCTGCACAATATATGaattaatattttgattttatgatGGGTGtatat
tgttttgatttatttttgtactGTATAGAAAAAACTTTGACTTAATAAAT
GCTTTATGAAGTGTGTATTTTACATCAAACTTaagtttttcataaatttt
gtcCACTCTCTAAATTAAATCTTgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057868-exon-scaffold_30-1491911889:7490..7610 | TCONS_00057868-exon-scaffold_30-1491911889:7490..7610 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1510915933:7490..7610 | TCONS_00057868-exon-scaffold_30-1510915933:7490..7610 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1575043694:7490..7610 | TCONS_00057868-exon-scaffold_30-1575043694:7490..7610 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1491911889:9180..9374 | TCONS_00057868-exon-scaffold_30-1491911889:9180..9374 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1510915933:9180..9374 | TCONS_00057868-exon-scaffold_30-1510915933:9180..9374 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1575043694:9180..9374 | TCONS_00057868-exon-scaffold_30-1575043694:9180..9374 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1491911889:15401..15864 | TCONS_00057868-exon-scaffold_30-1491911889:15401..15864 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1510915933:15401..15864 | TCONS_00057868-exon-scaffold_30-1510915933:15401..15864 | Clytia hemisphaerica | exon |
| TCONS_00057868-exon-scaffold_30-1575043694:15401..15864 | TCONS_00057868-exon-scaffold_30-1575043694:15401..15864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:7490..15864 + |
Blast
The following BLAST results are available for this feature:
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