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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057903 ID=TCONS_00057903|Name=TCONS_00057903|organism=Clytia hemisphaerica|type=transcript|length=1266bp
CTAAGATTTTTGGTCGAAAGTTGATCGAAAATTTTGTCAGTGTGAGAAAA
ACTGAAGGGGGGATAGAATGTTTTCAATTTAGGTATGGGGAGAAcagacc
ctgaaggacactatgaCACAATTTTCctagtgaagaaaaaaaattatctt
aaaaaaaagacttttataatttataagttatatttcaaaaagaagcttct
tttattttgtctGCATTTGAAAACCATCCATTTTCAACACATCATTCTGT
GTGTTTTTGTTCATTGAATCAATATTGGAAGAGAAAACACCAAAGCTGTC
AGTGCTGGTTGGTGacttaaaaacatattttagTCAGTGTAAGATCAACA
AAATGAAGCAACTatgcaattttcaaaatgtaattCTGAATATTTCTTCT
TGATTCATCTTTGGATAAGCCTTCTCTGGTGCACTTTAGTGGGcaccttt
cttttttataacaTAACAACCATTTAGATAAAACAAGAGTAGACGAAAGG
AACGGATTCATTGCTTCAATTGTCACTATCATGTTCACTATCACTCTCGC
TCTTATCATCTTCTTCTTCGCATATTGTCTCTACCACACCAGATTGTTTC
GTTTCATTTAATTCAACTTTAAAAATAGCAGTATCTAATCCAAGGTCAAT
TGGTATTGTATTCACTTGAAGTTCttgtttatagttttgattACTGATAC
CATCTGAAAGCTCATGATCTGCGACATCATTAGGTGATTCCTGTGAAGAa
gtgttttcttcttcatctccATCAACATTGTTTGATGCACTACTTATTAA
TTTTAATAAAGTCAATTCTTCTACTTTCAGTCTATTAATATGATCTTGAA
CAttcttttctaaatttttcaaaaatttctcctCTTCTACCAAGTATTGT
TTGTACACAGATTGTTCCCTTTGGtacatcttttcaaaaaaaaaaagagt
ataGTAAGGGTTTGTTGGCTAACTGATGATGGCTAAGTCCATTAAAATAT
GTTTCCTAGAGACAAAATAATCCATCCTGCTTGTTCTGGTTGGAGGCAAT
TAACATGACTTGGCaccaggttttaggtgccccctaagaattcaggtgac
ccctaagatttaagtaacccctggttgccaaatattttaggtgatcCAAG
CCAATCAGTGCAGCTGGAACTTCGATattccttggttagaaaaaacTACA
GTATACCTAGTTTTCTTTTCCATCAGCATCAACCCAggcgtccgcgctcg
ataggatcgatcatNN Run BLAST on NCBI protein sequence of TCONS_00057903-protein >TCONS_00057903-protein ID=TCONS_00057903-protein|Name=TCONS_00057903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MYQREQSVYKQYLVEEEKFLKNLEKNVQDHINRLKVEELTLLKLISSASN
NVDGDEEENTSSQESPNDVADHELSDGISNQNYKQELQVNTIPIDLGLDT
AIFKVELNETKQSGVVETICEEEDDKSESDSEHDSDN Run BLAST on NCBI transcript from alignment at scaffold_301:12822..14087 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057903 ID=TCONS_00057903|Name=TCONS_00057903|organism=Clytia hemisphaerica|type=transcript|length=1266bp|location=Sequence derived from alignment at scaffold_301:12822..14087 (Clytia hemisphaerica)
NNatgatcgatcctatcgagcgcggacgccTGGGTTGATGCTGATGGAAA
AGAAAACTAGGTATACTGTAgttttttctaaccaaggaatATCGAAGTTC
CAGCTGCACTGATTGGCTTGgatcacctaaaatatttggcaaccaggggt
tacttaaatcttaggggtcacctgaattcttagggggcacctaaaacctg
gtGCCAAGTCATGTTAATTGCCTCCAACCAGAACAAGCAGGATGGATTAT
TTTGTCTCTAGGAAACATATTTTAATGGACTTAGCCATCATCAGTTAGCC
AACAAACCCTTACtatactctttttttttttgaaaagatgtaCCAAAGGG
AACAATCTGTGTACAAACAATACTTGGTAGAAGaggagaaatttttgaaa
aatttagaaaagaaTGTTCAAGATCATATTAATAGACTGAAAGTAGAAGA
ATTGACTTTATTAAAATTAATAAGTAGTGCATCAAACAATGTTGATggag
atgaagaagaaaacactTCTTCACAGGAATCACCTAATGATGTCGCAGAT
CATGAGCTTTCAGATGGTATCAGTaatcaaaactataaacaaGAACTTCA
AGTGAATACAATACCAATTGACCTTGGATTAGATACTGCTATTTTTAAAG
TTGAATTAAATGAAACGAAACAATCTGGTGTGGTAGAGACAATATGCGAA
GAAGAAGATGATAAGAGCGAGAGTGATAGTGAACATGATAGTGACAATTG
AAGCAATGAATCCGTTCCTTTCGTCTACTCTTGTTTTATCTAAATGGTTG
TTAtgttataaaaaagaaaggtgCCCACTAAAGTGCACCAGAGAAGGCTT
ATCCAAAGATGAATCAAGAAGAAATATTCAGaattacattttgaaaattg
catAGTTGCTTCATTTTGTTGATCTTACACTGActaaaatatgtttttaa
gtCACCAACCAGCACTGACAGCTTTGGTGTTTTCTCTTCCAATATTGATT
CAATGAACAAAAACACACAGAATGATGTGTTGAAAATGGATGGTTTTCAA
ATGCagacaaaataaaagaagcttctttttgaaatataacttataaatta
taaaagtcttttttttaagataattttttttcttcactagGAAAATTGTG
tcatagtgtccttcagggtctgTTCTCCCCATACCTAAATTGAAAACATT
CTATCCCCCCTTCAGTTTTTCTCACACTGACAAAATTTTCGATCAACTTT
CGACCAAAAATCTTAG Coding sequence (CDS) from alignment at scaffold_301:12822..14087 >TCONS_00057903 ID=TCONS_00057903|Name=TCONS_00057903|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_301:12822..14087 (Clytia hemisphaerica)
atgtaCCAAAGGGAACAATCTGTGTACAAACAATACTTGGTAGAAGagga
gaaatttttgaaaaatttagaaaagaaTGTTCAAGATCATATTAATAGAC
TGAAAGTAGAAGAATTGACTTTATTAAAATTAATAAGTAGTGCATCAAAC
AATGTTGATggagatgaagaagaaaacactTCTTCACAGGAATCACCTAA
TGATGTCGCAGATCATGAGCTTTCAGATGGTATCAGTaatcaaaactata
aacaaGAACTTCAAGTGAATACAATACCAATTGACCTTGGATTAGATACT
GCTATTTTTAAAGTTGAATTAAATGAAACGAAACAATCTGGTGTGGTAGA
GACAATATGCGAAGAAGAAGATGATAAGAGCGAGAGTGATAGTGAACATG
ATAGTGACAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057903-exon-scaffold_301-1491911889:12822..14087 | TCONS_00057903-exon-scaffold_301-1491911889:12822..14087 | Clytia hemisphaerica | exon |
| TCONS_00057903-exon-scaffold_301-1510915933:12822..14087 | TCONS_00057903-exon-scaffold_301-1510915933:12822..14087 | Clytia hemisphaerica | exon |
| TCONS_00057903-exon-scaffold_301-1575043694:12822..14087 | TCONS_00057903-exon-scaffold_301-1575043694:12822..14087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_301 | supercontig | scaffold_301:12822..14087 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029138 | SNAPC5 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006384 | transcription initiation from RNA polymerase III promoter |
| GO:0006366 | transcription from RNA polymerase II promoter |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006366 |
transcription from RNA polymerase II promoter |
| biological_process |
GO:0006384 |
transcription initiation from RNA polymerase III promoter |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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