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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057935 ID=TCONS_00057935|Name=TCONS_00057935|organism=Clytia hemisphaerica|type=transcript|length=1880bp
tccggttgaaaattctggaaatcgccgtttttgcagattttcattggatt
ttttccttatatttctatgtttttcacacaaaaacattattcacacaaaa
acattattgataacaatgctcaccatcaagcatgattcaattgtcaataa
aactgatttttgcgaccagaactttctatctattttttccctacaaccct
tccctctccccctaccatcaatcaatgatgaatttcttgcattatgcatt
ttcgctaagcgctatgttttctgactgattttttttcatttttctccttg
cattgctatctaactttcatcatcaggtaggtccattcagcatctagctt
gttatttgaattttttatttttcagcaaaagtaaTAAGATGAATAGTTTC
CGTGGTATCAGAGGTATGACAAGGGTTGGTTCCCATACCATTCGGCTGTG
CAGatcacaacaacaacaaaagcgCCTGTTATCTGCAGCATTACCTGCAA
TCTCTCAGAGGGTTCTGAAATCTGCTTTTCAAGATGCAATTGTTTCGCCA
GTCAATAAATATGATTTGAGTGGCGGAACAGGTGTTTTGTCTTCTACATG
TTCTGCTTTGTTTTCAACTGTTGCAGAATCCATTTCAGATGAGGCGTCTT
CCAGCCTTGAGGAGAGTGATTCGGAGGCAGGAAAAGAATGTAGATGGCCA
TCTCCAGTACATCAACACCAGAATAAGAGGCAAGCAGCGTCGAACGAGCA
TTAGAAGCTAAGACTGTCACAGCAAAGAATGGACATGAGATTGAAATTAA
GCAAAGATCCaataatgaaaataacaaaaaagatttACTTGTGAAACGAA
CTGTTGTTATTAAAAACCTTCCTGCGCACTTTACGGTGCAAAAATGTATT
GAGTTGTTTGGGAGTGCTGGAGATCTTCAAGTAGTTAATGTTGTATTTAA
TGGTTTGATACAGAGATTCGATGAAAAGTCGTTTGCATTCCTTGTGTTCC
AGCAACCTCCAGATATGTCGGACATCCTTTCTCTCTTACCCACGATATCA
GATGATATTCAATTAGAAGAATTCAAGATCTCTAGAAAACAACCACCACG
CAACAGAAGCCAAAAGATCTTCATTGAAGATATCCCAGATGGTTTGCCTG
TAGAAGACATCATAAGTCACTTTGGTTCCTATGGAAACATATTGTACTCG
AAGCTTTTTAACAAAACTGACGAGGAAGCATCCAGAGGAAGTGCTATCAT
TGAATTTGATAACAATGATATTGCAATGAAGGCAACTGAAGACTTATATC
ATGACATAAATGGCTCCAAAGTCATTGCACGTTGTCTTGGCTGGAGAAAA
GACTTGTAGGCTTGTTAGCTAGGTATAGCGTTATTTCGGCTACCCGTTTT
TCTAATGATCCTATATTCTAGCTCAATCCTTAGCTGTTAGTCACAAACTA
AGTATTATGTGATCCTCTAAAGGCGAACAAACTGAACAATTTGGTACTTC
AGGATAATGCTTATTTTTTCCAGTTATTTCTCAACATAGTCGCATACGTT
ATAaggagattttgaattttttttatttcttgagTTAGAGGAACCTTCTC
ATCTCTATACATTTCTGTGGGTTGCAGGTAACTGAttctttcttgaaaat
ttctctcaaaCTAATGGAGTGAAAGTGTTACATTTATTTCAATGGAATTG
TGAAGATATTATCAATTTTATTAAGaagctttatttttgtttcataattt
ttcaggattatttttattttttagctaAGTGAGAAAACTTCACTGTATTA
GAATTTTATTAACACAATAATATGATAAACCTGCCAGAAAAAGTGTTTGC
TCTTTTCACCTTGATTTTTCAGACGTCTAC Run BLAST on NCBI protein sequence of TCONS_00057935-protein >TCONS_00057935-protein ID=TCONS_00057935-protein|Name=TCONS_00057935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MNSFRGIRGMTRVGSHTIRLCRSQQQQKRLLSAALPAISQRVLKSAFQDA
IVSPVNKYDLSGGTGVLSSTCSALFSTVAESISDEASSSLEESDSEAGKE
CRWPSPVHQHQNKRQAASNEH Run BLAST on NCBI transcript from alignment at scaffold_302:375632..377701+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057935 ID=TCONS_00057935|Name=TCONS_00057935|organism=Clytia hemisphaerica|type=transcript|length=2070bp|location=Sequence derived from alignment at scaffold_302:375632..377701+ (Clytia hemisphaerica)
tccggttgaaaattctggaaatcgccgtttttgcagattttcattggatt
ttttccttatatttctatgtttttcacacaaaaacattattcacacaaaa
acattattgataacaatgctcaccatcaagcatgattcaattgtcaataa
aactgatttttgcgaccagaactttctatctattttttccctacaaccct
tccctctccccctaccatcaatcaatgatgaatttcttgcattatgcatt
ttcgctaagcgctatgttttctgactgattttttttcatttttctccttg
cattgctatctaactttcatcatcaggtaggtccattcagcatctagctt
gttatttgaattttttatttttcagcaaaagtaaTAAGATGAATAGTTTC
CGTGGTATCAGAGGTATGACAAGGGTTGGTTCCCATACCATTCGGCTGTG
CAGatcacaacaacaacaaaagcgCCTGTTATCTGCAGCATTACCTGCAA
TCTCTCAGAGGGTTCTGAAATCTGCTTTTCAAGATGCAATTGTTTCGCCA
GTCAATAAATATGATTTGAGTGGCGGAACAGGTGTTTTGTCTTCTACATG
TTCTGCTTTGTTTTCAACTGTTGCAGAATCCATTTCAGATGAGGCGTCTT
CCAGCCTTGAGGAGAGTGATTCGGAGGCAGGAAAAGAATGTAGATGGCCA
TCTCCAGTACATCAACACCAGAATAGTAAGATAATACATTCCAATGCACA
CTCTGTCTTTGTCGGTGGACATCATTTTGATCACAGAGAGTTTGCACTTA
AAGAAATTTTCTCACAATTTGGGCCAGTCATTGAAGTAGCTGTACCTAAC
TTGCGACTCTATAACAGAACACCTAGTGATAACGAAACCTATCGATTTGC
ATTCATCCGTTTTAGAGAGGCAAGCAGCGTCGAACGAGCATTAGAAGCTA
AGACTGTCACAGCAAAGAATGGACATGAGATTGAAATTAAGCAAAGATCC
aataatgaaaataacaaaaaagatttACTTGTGAAACGAACTGTTGTTAT
TAAAAACCTTCCTGCGCACTTTACGGTGCAAAAATGTATTGAGTTGTTTG
GGAGTGCTGGAGATCTTCAAGTAGTTAATGTTGTATTTAATGGTTTGATA
CAGAGATTCGATGAAAAGTCGTTTGCATTCCTTGTGTTCCAGCAACCTCC
AGATATGTCGGACATCCTTTCTCTCTTACCCACGATATCAGATGATATTC
AATTAGAAGAATTCAAGATCTCTAGAAAACAACCACCACGCAACAGAAGC
CAAAAGATCTTCATTGAAGATATCCCAGATGGTTTGCCTGTAGAAGACAT
CATAAGTCACTTTGGTTCCTATGGAAACATATTGTACTCGAAGCTTTTTA
ACAAAACTGACGAGGAAGCATCCAGAGGAAGTGCTATCATTGAATTTGAT
AACAATGATATTGCAATGAAGGCAACTGAAGACTTATATCATGACATAAA
TGGCTCCAAAGTCATTGCACGTTGTCTTGGCTGGAGAAAAGACTTGTAGG
CTTGTTAGCTAGGTATAGCGTTATTTCGGCTACCCGTTTTTCTAATGATC
CTATATTCTAGCTCAATCCTTAGCTGTTAGTCACAAACTAAGTATTATGT
GATCCTCTAAAGGCGAACAAACTGAACAATTTGGTACTTCAGGATAATGC
TTATTTTTTCCAGTTATTTCTCAACATAGTCGCATACGTTATAaggagat
tttgaattttttttatttcttgagTTAGAGGAACCTTCTCATCTCTATAC
ATTTCTGTGGGTTGCAGGTAACTGAttctttcttgaaaatttctctcaaa
CTAATGGAGTGAAAGTGTTACATTTATTTCAATGGAATTGTGAAGATATT
ATCAATTTTATTAAGaagctttatttttgtttcataatttttcaggatta
tttttattttttagctaAGTGAGAAAACTTCACTGTATTAGAATTTTATT
AACACAATAATATGATAAACCTGCCAGAAAAAGTGTTTGCTCTTTTCACC
TTGATTTTTCAGACGTCTAC Coding sequence (CDS) from alignment at scaffold_302:375632..377701+ >TCONS_00057935 ID=TCONS_00057935|Name=TCONS_00057935|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_302:375632..377701+ (Clytia hemisphaerica)
ATGAATAGTTTCCGTGGTATCAGAGGTATGACAAGGGTTGGTTCCCATAC
CATTCGGCTGTGCAGatcacaacaacaacaaaagcgCCTGTTATCTGCAG
CATTACCTGCAATCTCTCAGAGGGTTCTGAAATCTGCTTTTCAAGATGCA
ATTGTTTCGCCAGTCAATAAATATGATTTGAGTGGCGGAACAGGTGTTTT
GTCTTCTACATGTTCTGCTTTGTTTTCAACTGTTGCAGAATCCATTTCAG
ATGAGGCGTCTTCCAGCCTTGAGGAGAGTGATTCGGAGGCAGGAAAAGAA
TGTAGATGGCCATCTCCAGTACATCAACACCAGAATAAGAGGCAAGCAGC
GTCGAACGAGCATTAGATGAATAGTTTCCGTGGTATCAGAGGTATGACAA
GGGTTGGTTCCCATACCATTCGGCTGTGCAGatcacaacaacaacaaaag
cgCCTGTTATCTGCAGCATTACCTGCAATCTCTCAGAGGGTTCTGAAATC
TGCTTTTCAAGATGCAATTGTTTCGCCAGTCAATAAATATGATTTGAGTG
GCGGAACAGGTGTTTTGTCTTCTACATGTTCTGCTTTGTTTTCAACTGTT
GCAGAATCCATTTCAGATGAGGCGTCTTCCAGCCTTGAGGAGAGTGATTC
GGAGGCAGGAAAAGAATGTAGATGGCCATCTCCAGTACATCAACACCAGA
ATAAGAGGCAAGCAGCGTCGAACGAGCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057935-exon-scaffold_302-1491911889:375632..376356 | TCONS_00057935-exon-scaffold_302-1491911889:375632..376356 | Clytia hemisphaerica | exon |
| TCONS_00057935-exon-scaffold_302-1510915933:375632..376356 | TCONS_00057935-exon-scaffold_302-1510915933:375632..376356 | Clytia hemisphaerica | exon |
| TCONS_00057935-exon-scaffold_302-1575043694:375632..376356 | TCONS_00057935-exon-scaffold_302-1575043694:375632..376356 | Clytia hemisphaerica | exon |
| TCONS_00057935-exon-scaffold_302-1491911889:376547..377701 | TCONS_00057935-exon-scaffold_302-1491911889:376547..377701 | Clytia hemisphaerica | exon |
| TCONS_00057935-exon-scaffold_302-1510915933:376547..377701 | TCONS_00057935-exon-scaffold_302-1510915933:376547..377701 | Clytia hemisphaerica | exon |
| TCONS_00057935-exon-scaffold_302-1575043694:376547..377701 | TCONS_00057935-exon-scaffold_302-1575043694:376547..377701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:375632..377701 + |
Blast
The following BLAST results are available for this feature:
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