TCONS_00057940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057940
Unique NameTCONS_00057940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057940 ID=TCONS_00057940|Name=TCONS_00057940|organism=Clytia hemisphaerica|type=transcript|length=1316bp
TTCCTATTCTCCACAAGCTGCGCTACCTATCATGTCAGTTGTCAATtcga
aataatttaataaaaaaccCGATTTTAAGCCAATAAATATGTTTTAAGAG
GATTGGAAACTAATTTAAGCGTTTTAACAGCATAATCACATTCCAAAATG
CATGGTATAAAAGTGGGCACGCGGTGGATGGTGATCAGATCGAAAAGTAC
AGAAGCGCTGGATTTTCTTGTACAAGCAACATCGAAGAAAATCGACCTTT
TTTTCACATCAAAATGAATCTGGTAATCTCGATCATTTTGTTGGCGTTTT
GCATTAACACCACGTTTTCAAGATGGACAAATGATGAAGTTGTTGATGAT
TATTACCGTGAAAGaaGTCTCCGTGACTCTATGCGACGTCAGTTCATGGA
CGCTAGAAAAATTCCTTTGCCATCGGACTATGATGAAGTGAGTGACTCCG
CCCAAATTGTGAATTCGCAACGCGATGATGACCCACATCGATACCGACCA
ATCACCTTGCCTTTGAGAGACGCCATTCGTTATATTAGAAAATACGGTCC
ACAAGCTCAAACTTTACAACGTCTCGACGATGAAGTGAGAAACCTCAGAT
TTTCGGACCCCCGAAAGATGTTCTTGCAAGAAAAGCGAGGAGAAAAACAT
TGTCATGCAAGACCAGACGATAAAAAACCATGCAAAATGGAGGTCAATGG
TTGTGGTTCAGGATTCAGTGAAGACATTCCTATGGTTTTTCGAGATCTCT
TTACACCATGCTGCAACAAACATGATGTTTGCTATGATTGTGGTACGACA
GATAAATGGACAAAAGATGAATGCGACGACACTTTCTATTATGATATGGC
GAACATGTGCGAATGCCGTTATCCCAGTATGTATCAATACGCTTTACGCA
AGATGTGTGAATTATGGTCCAAAACACTTTATGAAGTTGTCCACGTTTTT
GGTGGTCAATACTTTACCAAAGAGAAGAAAGAATTCTGTAAAGCTAAATG
TATCTTGCCACACGGAAGCCCAAACATGACTCTACTTGTGTGAGCTGTAA
CATTACCCGGACGGTAATTTTCGACTATCAAAGTGCACTTTCTCATTATT
TTATCACTAGTNTTTTTGTAATCCTTACTGGACGGTAATTTTCGACTATT
ATAGGGCACTTTCTCATTATTTTATCACTAGTTAGGGATATTTTTATAGG
TATCAACATTTGTATgttttttaactttgttttattaatgaaaaaggaaa
atattctcAAATTGTAGGATTTTCTGTGTTTACCATCTCTACTCTTTTGT
GCTAAACTGTAGGGGG
Run BLAST on NCBI

protein sequence of TCONS_00057940-protein

>TCONS_00057940-protein ID=TCONS_00057940-protein|Name=TCONS_00057940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MNLVISIILLAFCINTTFSRWTNDEVVDDYYRERSLRDSMRRQFMDARKI
PLPSDYDEVSDSAQIVNSQRDDDPHRYRPITLPLRDAIRYIRKYGPQAQT
LQRLDDEVRNLRFSDPRKMFLQEKRGEKHCHARPDDKKPCKMEVNGCGSG
FSEDIPMVFRDLFTPCCNKHDVCYDCGTTDKWTKDECDDTFYYDMANMCE
CRYPSMYQYALRKMCELWSKTLYEVVHVFGGQYFTKEKKEFCKAKCILPH
GSPNMTLLV
Run BLAST on NCBI

transcript from alignment at scaffold_302:384038..386364+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057940 ID=TCONS_00057940|Name=TCONS_00057940|organism=Clytia hemisphaerica|type=transcript|length=2327bp|location=Sequence derived from alignment at scaffold_302:384038..386364+ (Clytia hemisphaerica)
TTCCTATTCTCCACAAGCTGCGCTACCTATCATGTCAGTTGTCAATtcga
aataatttaataaaaaaccCGATTTTAAGCCAATAAATATGTTTTAAGAG
GATTGGAAACTAATTTAAGCGTTTTAACAGCATAATCACATTCCAAAATG
CATGGTATAAAAGTGGGCACGCGGTGGATGGTGATCAGATCGAAAAGTAC
AGAAGCGCTGGATTTTCTTGTACAAGCAACATCGAAGAAAATCGACCTTT
TTTTCACATCAAAATGGTGAGACTTCGAAATTTATacataaaaaatttca
gttttaccaaattaaaattgtcattaatgcAAATTGCCCATGGGGTACCG
TGTGCTTGGTTTTCTAATTCAATCTAATGTAAGAATTATAAGATGAGATA
ATGGCCAGTAGTATCACTAGCTAGCGACTATTCAATACCATTATTCGTTT
TCTTTCTTTCAGAATCTGGTAATCTCGATCATTTTGTTGGCGTTTTGCAT
TAACACCACGTTTTCAAGATGGACAAATGATGAAGTTGTTGATGATTATT
ACCGTGAAAGGTACGCCTTACAGCCAGCTTTCATTACTATTGTTATCATC
TGTAAACACTGCTACTTGTTTCTTATTAATTATTACTTACATACAACTCG
TGCATCTGTAACGtctaattttcttttctatttaaAGGGAGAAATGCACA
AATCTTTGTGCTCGACCAAGTTGATTaatgcagtgacgtaggaaaataTC
ATGTACTCAAAACGCGGAAAAAGGCTAATGATCATCTCtctgaaacaaaa
aattccGAATACCTTTAAAATTGTATGATAACACCCCCAAAACATTCATT
TAACcctatttttgtcattttagaaGTCTCCGTGACTCTATGCGACGTCA
GTTCATGGACGCTAGAAAAATTCCTTTGCCATCGGACTATGATGAAGTGA
GTGACTCCGCCCAAATTGTGAATTCGCAACGCGATGATGACCCACATCGA
TACCGACCAATCACCTTGCCTTTGAGAGACGCCATTCGTTATATTAGAAA
ATACGGTCCACAAGCTCAAACTTTACAACGTCTCGACGATGAAGTGAGAA
ACCTCAGATTTTCGGACCCCCGAAAGATGTTCTTGCAAGAAAAGCGAGGA
GAAAAACATTGTCATGCAAGACCAGACGATAAAAGTAAGATTTTGTACAG
AGGCTGAGCAGAATCCCTAGAAAATTGCCCGCTAAGTTTTACCGACATTT
GAAATTCGTTGAGATGCTTTTCTACAAGAGATGCAAAATTATGAGAACCT
TGTATCAAAATTTACGAAATCTCAAGCTGTCTGAAAGATTAGCatgtttt
atcaaaaagtacagcaaaatatattttttaattgcaGTTTTGTAAGCGAG
TATACTGGTTAAACTTATTTCATACTTCTGCATAGAACCATGCAAAATGG
AGGTCAATGGTTGTGGTTCAGGATTCAGTGAAGACATTCCTATGGTTTTT
CGAGATCTCTTTACACCATGCTGCAACAAACATGATGTTTGCTATGATTG
TGTAAGAATTGATTTTAAGCATAATATATGTTTGCTGATCCCAAGGAGCT
CTAAACTCAATACCAGGGAATTATTCCAGTGTCTGTTGTTTTCATTCTTa
ccaaaaaatttcaactttaattTCCCCTTTCAGAGTGTCACTAAAAAGTT
TAAGGAAAGCATTTTTTTGTGTGAGAGCTGCGTTTTACGTGGATCTTTTT
CGCTTTTAGTATTTACAAACTCTGTTGAGCAAATGCCTAATTCTCATTAC
AGGGTACGACAGATAAATGGACAAAAGATGAATGCGACGACACTTTCTAT
TATGATATGGCGAACATGTGCGAATGCCGTTATCCCAGTATGTATCAATA
CGCTTTACGCAAGATGTGTGAATTATGGTCCAAAACACTTTATGAAGTTG
TCCACGTTTTTGGTGGTCAATACTTTACCAAAGAGAAGAAAGAATTCTGT
AAAGCTAAATGTATCTTGCCACACGGAAGCCCAAACATGACTCTACTTGT
GTGAGCTGTAACATTACCCGGACGGTAATTTTCGACTATCAAAGTGCACT
TTCTCATTATTTTATCACTAGTNTTTTTGTAATCCTTACTGGACGGTAAT
TTTCGACTATTATAGGGCACTTTCTCATTATTTTATCACTAGTTAGGGAT
ATTTTTATAGGTATCAACATTTGTATgttttttaactttgttttattaat
gaaaaaggaaaatattctcAAATTGTAGGATTTTCTGTGTTTACCATCTC
TACTCTTTTGTGCTAAACTGTAGGGGG

Coding sequence (CDS) from alignment at scaffold_302:384038..386364+

>TCONS_00057940 ID=TCONS_00057940|Name=TCONS_00057940|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_302:384038..386364+ (Clytia hemisphaerica)
ATGAATCTGGTAATCTCGATCATTTTGTTGGCGTTTTGCATTAACACCAC
GTTTTCAAGATGGACAAATGATGAAGTTGTTGATGATTATTACCGTGAAA
GaaGTCTCCGTGACTCTATGCGACGTCAGTTCATGGACGCTAGAAAAATT
CCTTTGCCATCGGACTATGATGAAGTGAGTGACTCCGCCCAAATTGTGAA
TTCGCAACGCGATGATGACCCACATCGATACCGACCAATCACCTTGCCTT
TGAGAGACGCCATTCGTTATATTAGAAAATACGGTCCACAAGCTCAAACT
TTACAACGTCTCGACGATGAAGTGAGAAACCTCAGATTTTCGGACCCCCG
AAAGATGTTCTTGCAAGAAAAGCGAGGAGAAAAACATTGTCATGCAAGAC
CAGACGATAAAAAACCATGCAAAATGGAGGTCAATGGTTGTGGTTCAGGA
TTCAGTGAAGACATTCCTATGGTTTTTCGAGATCTCTTTACACCATGCTG
CAACAAACATGATGTTTGCTATGATTGTGGTACGACAGATAAATGGACAA
AAGATGAATGCGACGACACTTTCTATTATGATATGGCGAACATGTGCGAA
TGCCGTTATCCCAGTATGTATCAATACGCTTTACGCAAGATGTGTGAATT
ATGGTCCAAAACACTTTATGAAGTTGTCCACGTTTTTGGTGGTCAATACT
TTACCAAAGAGAAGAAAGAATTCTGTAAAGCTAAATGTATCTTGCCACAC
GGAAGCCCAAACATGACTCTACTTGTGTGAATGAATCTGGTAATCTCGAT
CATTTTGTTGGCGTTTTGCATTAACACCACGTTTTCAAGATGGACAAATG
ATGAAGTTGTTGATGATTATTACCGTGAAAGaaGTCTCCGTGACTCTATG
CGACGTCAGTTCATGGACGCTAGAAAAATTCCTTTGCCATCGGACTATGA
TGAAGTGAGTGACTCCGCCCAAATTGTGAATTCGCAACGCGATGATGACC
CACATCGATACCGACCAATCACCTTGCCTTTGAGAGACGCCATTCGTTAT
ATTAGAAAATACGGTCCACAAGCTCAAACTTTACAACGTCTCGACGATGA
AGTGAGAAACCTCAGATTTTCGGACCCCCGAAAGATGTTCTTGCAAGAAA
AGCGAGGAGAAAAACATTGTCATGCAAGACCAGACGATAAAAAACCATGC
AAAATGGAGGTCAATGGTTGTGGTTCAGGATTCAGTGAAGACATTCCTAT
GGTTTTTCGAGATCTCTTTACACCATGCTGCAACAAACATGATGTTTGCT
ATGATTGTGGTACGACAGATAAATGGACAAAAGATGAATGCGACGACACT
TTCTATTATGATATGGCGAACATGTGCGAATGCCGTTATCCCAGTATGTA
TCAATACGCTTTACGCAAGATGTGTGAATTATGGTCCAAAACACTTTATG
AAGTTGTCCACGTTTTTGGTGGTCAATACTTTACCAAAGAGAAGAAAGAA
TTCTGTAAAGCTAAATGTATCTTGCCACACGGAAGCCCAAACATGACTCT
ACTTGTGTGAATGAATCTGGTAATCTCGATCATTTTGTTGGCGTTTTGCA
TTAACACCACGTTTTCAAGATGGACAAATGATGAAGTTGTTGATGATTAT
TACCGTGAAAGaaGTCTCCGTGACTCTATGCGACGTCAGTTCATGGACGC
TAGAAAAATTCCTTTGCCATCGGACTATGATGAAGTGAGTGACTCCGCCC
AAATTGTGAATTCGCAACGCGATGATGACCCACATCGATACCGACCAATC
ACCTTGCCTTTGAGAGACGCCATTCGTTATATTAGAAAATACGGTCCACA
AGCTCAAACTTTACAACGTCTCGACGATGAAGTGAGAAACCTCAGATTTT
CGGACCCCCGAAAGATGTTCTTGCAAGAAAAGCGAGGAGAAAAACATTGT
CATGCAAGACCAGACGATAAAAAACCATGCAAAATGGAGGTCAATGGTTG
TGGTTCAGGATTCAGTGAAGACATTCCTATGGTTTTTCGAGATCTCTTTA
CACCATGCTGCAACAAACATGATGTTTGCTATGATTGTGGTACGACAGAT
AAATGGACAAAAGATGAATGCGACGACACTTTCTATTATGATATGGCGAA
CATGTGCGAATGCCGTTATCCCAGTATGTATCAATACGCTTTACGCAAGA
TGTGTGAATTATGGTCCAAAACACTTTATGAAGTTGTCCACGTTTTTGGT
GGTCAATACTTTACCAAAGAGAAGAAAGAATTCTGTAAAGCTAAATGTAT
CTTGCCACACGGAAGCCCAAACATGACTCTACTTGTGTGAATGAATCTGG
TAATCTCGATCATTTTGTTGGCGTTTTGCATTAACACCACGTTTTCAAGA
TGGACAAATGATGAAGTTGTTGATGATTATTACCGTGAAAGaaGTCTCCG
TGACTCTATGCGACGTCAGTTCATGGACGCTAGAAAAATTCCTTTGCCAT
CGGACTATGATGAAGTGAGTGACTCCGCCCAAATTGTGAATTCGCAACGC
GATGATGACCCACATCGATACCGACCAATCACCTTGCCTTTGAGAGACGC
CATTCGTTATATTAGAAAATACGGTCCACAAGCTCAAACTTTACAACGTC
TCGACGATGAAGTGAGAAACCTCAGATTTTCGGACCCCCGAAAGATGTTC
TTGCAAGAAAAGCGAGGAGAAAAACATTGTCATGCAAGACCAGACGATAA
AAAACCATGCAAAATGGAGGTCAATGGTTGTGGTTCAGGATTCAGTGAAG
ACATTCCTATGGTTTTTCGAGATCTCTTTACACCATGCTGCAACAAACAT
GATGTTTGCTATGATTGTGGTACGACAGATAAATGGACAAAAGATGAATG
CGACGACACTTTCTATTATGATATGGCGAACATGTGCGAATGCCGTTATC
CCAGTATGTATCAATACGCTTTACGCAAGATGTGTGAATTATGGTCCAAA
ACACTTTATGAAGTTGTCCACGTTTTTGGTGGTCAATACTTTACCAAAGA
GAAGAAAGAATTCTGTAAAGCTAAATGTATCTTGCCACACGGAAGCCCAA
ACATGACTCTACTTGTGTGAATGAATCTGGTAATCTCGATCATTTTGTTG
GCGTTTTGCATTAACACCACGTTTTCAAGATGGACAAATGATGAAGTTGT
TGATGATTATTACCGTGAAAGaaGTCTCCGTGACTCTATGCGACGTCAGT
TCATGGACGCTAGAAAAATTCCTTTGCCATCGGACTATGATGAAGTGAGT
GACTCCGCCCAAATTGTGAATTCGCAACGCGATGATGACCCACATCGATA
CCGACCAATCACCTTGCCTTTGAGAGACGCCATTCGTTATATTAGAAAAT
ACGGTCCACAAGCTCAAACTTTACAACGTCTCGACGATGAAGTGAGAAAC
CTCAGATTTTCGGACCCCCGAAAGATGTTCTTGCAAGAAAAGCGAGGAGA
AAAACATTGTCATGCAAGACCAGACGATAAAAAACCATGCAAAATGGAGG
TCAATGGTTGTGGTTCAGGATTCAGTGAAGACATTCCTATGGTTTTTCGA
GATCTCTTTACACCATGCTGCAACAAACATGATGTTTGCTATGATTGTGG
TACGACAGATAAATGGACAAAAGATGAATGCGACGACACTTTCTATTATG
ATATGGCGAACATGTGCGAATGCCGTTATCCCAGTATGTATCAATACGCT
TTACGCAAGATGTGTGAATTATGGTCCAAAACACTTTATGAAGTTGTCCA
CGTTTTTGGTGGTCAATACTTTACCAAAGAGAAGAAAGAATTCTGTAAAG
CTAAATGTATCTTGCCACACGGAAGCCCAAACATGACTCTACTTGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036532XLOC_036532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057940-exon-scaffold_302-1491911889:384038..384303TCONS_00057940-exon-scaffold_302-1491911889:384038..384303Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1510915933:384038..384303TCONS_00057940-exon-scaffold_302-1510915933:384038..384303Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1575043694:384038..384303TCONS_00057940-exon-scaffold_302-1575043694:384038..384303Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1491911889:384500..384597TCONS_00057940-exon-scaffold_302-1491911889:384500..384597Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1510915933:384500..384597TCONS_00057940-exon-scaffold_302-1510915933:384500..384597Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1575043694:384500..384597TCONS_00057940-exon-scaffold_302-1575043694:384500..384597Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1491911889:384911..385221TCONS_00057940-exon-scaffold_302-1491911889:384911..385221Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1510915933:384911..385221TCONS_00057940-exon-scaffold_302-1510915933:384911..385221Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1575043694:384911..385221TCONS_00057940-exon-scaffold_302-1575043694:384911..385221Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1491911889:385473..385588TCONS_00057940-exon-scaffold_302-1491911889:385473..385588Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1510915933:385473..385588TCONS_00057940-exon-scaffold_302-1510915933:385473..385588Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1575043694:385473..385588TCONS_00057940-exon-scaffold_302-1575043694:385473..385588Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1491911889:385840..386364TCONS_00057940-exon-scaffold_302-1491911889:385840..386364Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1510915933:385840..386364TCONS_00057940-exon-scaffold_302-1510915933:385840..386364Clytia hemisphaericaexon
TCONS_00057940-exon-scaffold_302-1575043694:385840..386364TCONS_00057940-exon-scaffold_302-1575043694:385840..386364Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057940-proteinTCONS_00057940-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_302supercontigscaffold_302:384038..386364 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.512777	0.531291	0.72574	0.284009	0.172877	0.13661	0	0	0.351087	0.234165	0.259756	0.747045	0.341032	0.309894	0.254775	0.273413	6.83268	4.43869	0.885776	0.891251	15.803	15.3257	391.972	436.605	205.801	123.482	3500.78	3176.81	29.8444	27.7611
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016090PLipase_A2_dom
IPR010711PLA2G12
Vocabulary: Molecular Function
TermDefinition
GO:0004623phospholipase A2 activity
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0050482arachidonic acid secretion
GO:0006644phospholipid metabolic process
GO:0016042lipid catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050482 arachidonic acid secretion
biological_process GO:0016042 lipid catabolic process
biological_process GO:0006644 phospholipid metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004623 phospholipase A2 activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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