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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057941 ID=TCONS_00057941|Name=TCONS_00057941|organism=Clytia hemisphaerica|type=transcript|length=1243bp
AAACTCTTTATTGCCATTTTCTAAAAGTTATGCGTGACGGTTTATTTCAT
TGTAATCAGCTTTTCAATGAGATTGGTAATATGATTGCGTACTATTATAT
TCTTCGCTTATTATTCGCTTTTTAATGATATTAGCGCAACTGTTACGTGT
GTTTGTTGAAAGGTATAAAAGGGAGTCGACGCTTACCTAGTCTAGTAGTA
CCATATTCTAACGAGGTGAATGCTGATAAACCACTGAGAATACCAGAAGC
TGAAACTATGAATTCATTGTGCACCATCATCCTATTTGTGTGCGTGATCA
ACGCAGTATTTGGTCGTTATTACTATGACAACGATAGAGCACCATGGAAA
CAATACAACGAGAAAAGAGATGACAGACAACCGTCGTTTCTAACGAGAGA
TTCCTTTAGACAAGACAATGAGAATTTTCCAAGATTGCAAGATTCAAGAT
TCGCAAGATTTCATGATTTCCAAAAAGAAGAGCCAAACCCGAACCGCCCA
CTTCCGATCCCTTTGAAAGACGCAGTCCGGTATGTCCGACAATACGGGCC
ACATGCGGACATGTTGCGGGCAAAGGAAGAAAAAGTGATGAGCTACAAAT
TCTCAGATGCAGTGAATCACTTTAGGAATAAGAACAAACGATCTGAAGAA
CCAAAGTGTCAACGTCGAACGGGTGACCCAAAATGCAAACGAGACGTGAA
TGGTTGTGGATCTGGTTTCACTGAAGGAATCCCTTTCTTTTTTCGTGAAG
CTTTTACACCATGCTGCAACAAGCACGACGTCTGCTATGATTGTGGTGTG
ACAGATTCTTGGACGCGAAAAGAATGCGATACAGCTTTTTACAACGATAT
GGTGGATGTTTGTGAGTGCGAATATCCTAACTGGTCGCAATATGCACAAT
ATCTGGCATGTCAGTTACGAGCATCTGAGTTATGGGCAGCTGTTAATGTC
TTCGCTGGATCATTTTTCGGTACCAAAGAGAAGGCAGTGTGCAAACAACA
ATGTATCTTGCCCTATGGTAGTCCCAAAATAAGCTTGTTGGAATAGTTCT
GTCTTGCAATGAGCTTTAAAGATTTCTGCTCCTGGGTTGTGACAAGCTAA
TCGAAACGGATATAACTTTCTAGTCATTTTTTTATGAGTTTATACtattt
ttttaaccctttgagtgccagggtccttttttctaagttttttttaaaaa
atcgctagttcaaactttaagggcttatatctcctgatctaga Run BLAST on NCBI transcript from alignment at scaffold_302:387160..392113+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057941 ID=TCONS_00057941|Name=TCONS_00057941|organism=Clytia hemisphaerica|type=transcript|length=4954bp|location=Sequence derived from alignment at scaffold_302:387160..392113+ (Clytia hemisphaerica)
AAACTCTTTATTGCCATTTTCTAAAAGTTATGCGTGACGGTTTATTTCAT
TGTAATCAGCTTTTCAATGAGATTGGTAATATGATTGCGTACTATTATAT
TCTTCGCTTATTATTCGCTTTTTAATGATATTAGCGCAACTGTTACGTGT
GTTTGTTGAAAGGTATAAAAGGGAGTCGACGCTTACCTAGTCTAGTAGTA
CCATATTCTAACGAGGTGAATGCTGATAAACCACTGAGAATACCAGAAGC
TGAAACTATGGTAAGAATAGGTTATCTCTTATTGTCTTGTATACTTAGCT
CAAAAAAGGtcctaaatttgaaaaaagatattgttGCTGAAATTCGACAC
AAGGAGGCTCCTCCTAGAACCtcccgaaaaaaaaaactgGAATTAAATCA
AAAGTGTTGGATCACTTTTTTTTAGGCGGGGGTTATGATGTCCACTGTCC
ACTATAAAttcttgcaaaaaaatttttttaaacgttttcaaaaatcaatt
tatcaTATTCATATCATATAACCACATTATTACATACATTTAGATATACT
TTAGGCATACAAACTATcagcccttttcgcgaaagtaattttctttgata
attctttgaaagGGCCATTTGCAAATCTGTAAAGATTTTAACTTAggata
aaatgtaaaatttatggCACTGTATAGCCTGTTAAAAGTTTCATAAATTC
AAAAGACAAAAGTTCGAAAGTTTCAAcctaattatttattttttacccta
agtatttgtccctctaagtcATTTGTTCATaagaaaatattcatttttat
gtcttgattcgcgatagtttctgcttgcgaaagtttgtGCGCCTAAAATA
CAATGTGTCCCAAAAAAGCAGAAAACTGACCGTATGAGTCCCTTATGAgt
cctttttccaagcttcccaaagtgcagtGTAAAGGTCAAAATGAGTaaat
atgaaaagaaaaagtgcACTTTAAGGGTGTAGAATCCCACGATATTTTAT
CTTACCGACCTTTTTACCTTTAGTGCCCCCCCGGGCTGGGTTTGTATCTG
TTATAATGATTAATTTTCTCTTATGATGGTTAAATTACCAAGTTCAATGT
TTTGTTGGTCACGATCTTTTTAACATACCTTTCCTTTGACAGGGCTTAAT
AGCATAAAGAAGGAATTGCTTAATCTCTAAATCAATTATGATACTGCATT
CATCCCTTTTATCTTATTGCTATCAAATTGTATTTTAGACAGCGGCTCAA
TTCATTGTGCAAATCGCATTATTTACCAAAACAAAATTCGTGCAACGTAT
CTAGACACGTCAAACGTCAGACATGAAATCATAGAGGTCCATAAACACGA
GAGATTTGCTTTAAGATAAAGCCTACTATTGTCACTTCTCCACCGGAAAA
ACTGGGTCCCAGACtatctttgaagtgaatttccTCGAGTTTTCTAAACT
GTTAAAAGATTCATTTGCATTGGAgtacaatatgaaatatattttccaag
tTCAGAATTTTCGTCATATGTTCCAACGCGTTTTTAGTCAATCAGATTGC
TTACATTtttctagcctggatatcctgGATAGCCCCTTACGACTTCAGCG
GAATGAgtgcaagcaagcggactgtaTTCTGATCTGAGAaggcaaatcgc
tctagggagaccaggctgtaaatcagaacatgaaatatcaaaaactagac
tgtgaaatagtttacagcctggatatccaggctaatattCTTCATGTTAA
TGATAAACATGTTTACTGTTGAcgaatccaagatcttggattaagttcaa
agttgatattttttacgCGTCATTGAAAGCACAACTCAGAAATGTTATCA
acgcttttttaaaaagagtcagtaatagagaatcataacataaagatttG
TCTATTATGTCGGTTCCATTGAAGTAATATTACCATAATCCCATAATTAA
TATAATTATTgttgggaatcatgtagaagatttcttttgaaagaaactca
tttcaattacaatttctggggaattcgtcaaCAGTAAACATGTTTATCat
caataacatgaaaaatatTAGCCTGCATGTCCAGGATTGGattgttgaaa
ctttttttttatctatagtataggtaacacgaacaaatagtacaaaacaa
aagtttgaaagttgaaactttGCCACATGTTCAGAGAAGTGTAAAATATT
TATAGGTAACAGACCAAGGGAGGTAGAGAAATTCCAATTTTCTACATTTT
CGACTTATTCTCAAATTTGCCTTTaaacaatacacgtttttttttataag
gaacacgtttataaggaactcgaggctgaaaatggttcaaaaaataagga
attgtcaaggaactgctcaggctgagaataagtggatttgaaaataatgt
accttattgggactaatttgaccaaattttgatctttcaaggggcaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtaaggaactcga
taaggaactttgagactgaaattctctgtaaaaataaggaactccaggct
cagagcaaagttaaggttccttataaaaaaaaaacgtgtacgccAACCCG
GATCCAGTCGTCCGGATCCAGCCTCACACCAAGCGTGAGTGTTCTGTAGT
ctcatttagaaaaaaatgcagGAAAATCATGCAGcgagaaaaaaagtaaa
aggaaGCGGTCCTTACCCCGAATATAAAAACAGGAAATTCAGTAGCGCTC
TCAAGGTTTCGGAAAGTTTGTGTAGGAGAGCGCAATTTTGTTGCGAAGTT
ATTATCTTTTAATTTTATGAATAGATAGTCactttgtcataaaaatctgc
tcttcGACACAAATTTTCCGACACCCCTGAGAACGCTCTTGTCGGAAACC
GGTCCAATTTAATTTAGACGTCCCTAATGCAAATCTAATAATTAACATAT
CAattaattcaattttaattATGCTTCCGCTCTCTcaatcaaaatattat
aaaagaaGCTTTCTTACGTGTAAGAGGCATCACTCGTCTTTTGATTCAAG
TCCAAAGTAAACTAACATGGTAGGTGTACTAATAACTTTGTGTAGGGATT
TTCATTATAAATCGGCGGTTATGGTTTTTATAGCCTACCATTTTTGCATT
GCATAACTTTATACTCGTTCTTTTTAGAATTCATTGTGCACCATCATCCT
ATTTGTGTGCGTGATCAACGCAGTATTTGGTCGTTATTACTATGACAACG
ATAGAGCACCATGGAAACAATACAACGAGAAAAGAGATGACAGACAACCG
TCGTTTCTAACGAGAGATTCCTTTAGACAAGACAATGAGAATTTTCCAAG
ATTGCAAGATTCAAGATTCGCAAGATTTCATGATTTCCAAAAAGAAGAGC
CAAACCCGAACCGCCCACTTCCGATCCCTTTGAAAGACGCAGTCCGGTAT
GTCCGACAATACGGGCCACATGCGGACATGTTGCGGGCAAAGGAAGAAAA
AGTGATGAGCTACAAATTCTCAGATGCAGTGAATCACTTTAGGAATAAGA
ACAAACGATCTGAAGAACCAAAGTGTCAACGTCGAACGGGTGACCCAAGT
GAGTGgaataaaatacaaatcaaACTGGTCCCCAGTTTTTTATTATTCAC
ATCTGAAATTAGTAAATCCAAGTCTATCAGAATTCTAATGTAATTATAGA
ACCACAATGTAAAATCTATTGTAAATTACGGGATAGTTGTCCGGGACAAT
TCATCCAGCAGGATCAACAATGTCCATAAGCTAACATTCATGGAAAACAA
TGTGTAATGTATATTTCATGTATTTGGCTATCCTTCGTCTTTTAGAATGC
AAACGAGACGTGAATGGTTGTGGATCTGGTTTCACTGAAGGAATCCCTTT
CTTTTTTCGTGAAGCTTTTACACCATGCTGCAACAAGCACGACGTCTGCT
ATGATTGTGTAAGTTCAAAAccctcccgccgatttttttccgtaccGCCA
TAAcaccataccgccatattttcctgTAACGGACAATAACATTGTCTACC
GTATGTCAAAAGGTTGAAGATTAAGAAATATATTAACCTATGACGATTAA
AATTAATTTAGGGCCCTGGGGACCATGTTTTAGAGTGTATTATATGTGGC
GAAAGCTTTGAATGCGGAAAAACAAAACATGGCGGGTgccaaaacttgat
ttaagtCCTTAATGGCCCTTAATGCTATCTTTTATTTCTGGTATTTTTCT
TGCAGGGTGTGACAGATTCTTGGACGCGAAAAGAATGCGATACAGCTTTT
TACAACGATATGGTGGATGTTTGTGAGTGCGAATATCCTAACTGGTCGCA
ATATGCACAATATCTGGCATGTCAGTTACGAGCATCTGAGTTATGGGCAG
CTGTTAATGTCTTCGCTGGATCATTTTTCGGTACCAAAGAGAAGGCAGTG
TGCAAACAACAATGTATCTTGCCCTATGGTAGTCCCAAAATAAGCTTGTT
GGAATAGTTCTGTCTTGCAATGAGCTTTAAAGATTTCTGCTCCTGGGTTG
TGACAAGCTAATCGAAACGGATATAACTTTCTAGTCATTTTTTTATGAGT
TTATACtatttttttaaccctttgagtgccagggtccttttttctaagtt
ttttttaaaaaatcgctagttcaaactttaagggcttatatctcctgatc
taga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057941-exon-scaffold_302-1491911889:387160..387419 | TCONS_00057941-exon-scaffold_302-1491911889:387160..387419 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1510915933:387160..387419 | TCONS_00057941-exon-scaffold_302-1510915933:387160..387419 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1575043694:387160..387419 | TCONS_00057941-exon-scaffold_302-1575043694:387160..387419 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1491911889:390587..391007 | TCONS_00057941-exon-scaffold_302-1491911889:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1510915933:390587..391007 | TCONS_00057941-exon-scaffold_302-1510915933:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1575043694:390587..391007 | TCONS_00057941-exon-scaffold_302-1575043694:390587..391007 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1491911889:391255..391367 | TCONS_00057941-exon-scaffold_302-1491911889:391255..391367 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1510915933:391255..391367 | TCONS_00057941-exon-scaffold_302-1510915933:391255..391367 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1575043694:391255..391367 | TCONS_00057941-exon-scaffold_302-1575043694:391255..391367 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1491911889:391665..392113 | TCONS_00057941-exon-scaffold_302-1491911889:391665..392113 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1510915933:391665..392113 | TCONS_00057941-exon-scaffold_302-1510915933:391665..392113 | Clytia hemisphaerica | exon |
| TCONS_00057941-exon-scaffold_302-1575043694:391665..392113 | TCONS_00057941-exon-scaffold_302-1575043694:391665..392113 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_302 | supercontig | scaffold_302:387160..392113 + |
Blast
The following BLAST results are available for this feature:
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