Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057987 ID=TCONS_00057987|Name=TCONS_00057987|organism=Clytia hemisphaerica|type=transcript|length=1000bpRun BLAST on NCBI transcript from alignment at scaffold_302:408389..431664- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057987 ID=TCONS_00057987|Name=TCONS_00057987|organism=Clytia hemisphaerica|type=transcript|length=23276bp|location=Sequence derived from alignment at scaffold_302:408389..431664- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00057987 vs. Swiss-Prot (Human)
Match: NFXL1 (NF-X1-type zinc finger protein NFXL1 OS=Homo sapiens GN=NFXL1 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 5.991e-60 Identity = 134/307 (43.65%), Postives = 171/307 (55.70%), Query Frame = 1 Query: 55 PSDCHHEKRENHRCHFGRCPPCKKACGKVFE-CGHSCPDLCHDQVRDKDAENRNLLRGINGKRGNKEIYVALPCQPCRAPVKKLCLGEHDFREFPCSEVVEYACQTPCGRRLACGNHTCTKKCHLVK---GKPEQGKAGSNCEKCKEMCRKERPTGCVHDCKLPCHPGDCPPCETHLKMFCHCKALQVYLKCWEFHEGDEKRQEEMLCCTVRCQRIISCGHACSKICHEGPCSLANECQEXXXXXXXXXXXXXDLPCIEVDED-TQIDCDDKCKEIKAKKNMSKQQEEKERRDAELRAQQEELEKFE 960 P CHH +E HRCHFG CPPC + C KV E CGH CP CHDQ K I ALPC PC+ P+ CLG+H+ PC V Y+C+ CGR L C NHTC K+CH V G + KAG C C+E C K RP GC+H C L CHPG+CPPC L++ CHCK +Y++C + D + + CC +C + + CGH C ++CH G C C +K K++C C R KK+L C +V E+ I+CD CKE+K K + K+ E K + E R QQ ELE FE Sbjct: 557 PPTCHHTSQEKHRCHFGSCPPCHQPCQKVLEKCGHLCPAPCHDQALIKQTGRHQPTGPWEQPSEPAFIQTALPCPPCQVPIPMECLGKHEVSPLPCHAVGPYSCKRVCGRILDCQNHTCMKECHKVTKTDGCTGKNKAGPECLHCEEGCSKSRPLGCLHPCILRCHPGECPPCVQMLRIKCHCKITSLYVECRKITTADVNEKNLLSCCKNQCPKELPCGHRCKEMCHPGECPF--NCNQKVKLRCPCKRIKKELQCNKVRENQVSIECDTTCKEMKRKASEIKEAEAKAALEEEKRRQQAELEAFE 861 The following BLAST results are available for this feature:
BLAST of TCONS_00057987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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