TCONS_00058071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058071
Unique NameTCONS_00058071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058071 ID=TCONS_00058071|Name=TCONS_00058071|organism=Clytia hemisphaerica|type=transcript|length=1200bp
CTAAAAATTCacgaaaagaaagattttcagtGCGAGAACAACAAAAATGG
CCGCCGGAGTTAGCTGACAGTCTTTGAAACTCACTTTAAAAATGAGTTGA
AAATATACCAAAATATTAAGTTTTTTGACGATTTATAAATGTTAAGAAGA
AGTACAATGGCTGTTGCAAGGGGAATTATCTCTTACCACAGTGCTGGAGG
AAGGAGCATTGGTTCACCACAACTTACACTCACTGCACCGATGACACCAA
CAAAACAATATTTACACCAATTTTCTCTTCATACATCAAGCTTTTCGCCC
AAAACAACAAATGGAAAGGAATCATCTCTTTCAAACGTTATTGACCTTGT
AGAAGGGAAATGTGTTTCTaaagaacttgaagaaaaacCTGAAAGATTGT
TACAAAAACAACAATCAacagaagaagaagaatttcTCACATTAAATGAA
GATGAAATTGAAGAGAAATTTATCCGTGGCTCTGGCCCTGGTGGTCAAAA
GATTAATAAGACAAGCAGTTGTGTTGAACTGAAGCACATCAAAACAGGAA
TTATTGTCAAGTGTCAAGAAAGCAGATCACAGgatcaaaatcgaaaaatt
gctCGATCACGAATGTTGGAGAAATTAAAACAAATGTTTGCACCTATATT
GAGTGATGCCAACAAAAAGAAGGAGAAACAGAAAAAACGGAAAATTGAGA
CTGAACGCAAACGAAAGTTAAAAGAGGATGCTATGAAAAACAGAGTTGAA
CTCTAATTGAGATGTGCCCCTACTTTATAGTGACAATATCCAAGCTAATC
AAAATTGATGTTGATCACTAATGATAGTGAAGTGGTGGATATGTTACAAA
ATCATTTCCTAGGTTGTTGGGAATAGATTTTGATTTGTTGATTGATGATC
ATGTAGAGTAATTCCCTTAATGCTCAATTGTGATTTGAGATTATTTCCCC
CATTGTTAAGCCTGCTGgatctttagtttttttaagtttaattaTATACG
AAATGATAATTTGTTCATTTAAATTTAGTCTCAGTGTCACTAGATCTATT
TTCTCTGTCAGGGAAGATGGGTCGTTATCCAGTATTCCACCAGGGTAAAA
AACCTGCCTTTTTTGAATTTGGAAGTAGTTGCAACCATCTCTTTAAATCa
ataaaaccttgaaaaaatgaGAATGGGAGACCCTTATTTGTAATGATACC
Run BLAST on NCBI

protein sequence of TCONS_00058071-protein

>TCONS_00058071-protein ID=TCONS_00058071-protein|Name=TCONS_00058071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MLRRSTMAVARGIISYHSAGGRSIGSPQLTLTAPMTPTKQYLHQFSLHTS
SFSPKTTNGKESSLSNVIDLVEGKCVSKELEEKPERLLQKQQSTEEEEFL
TLNEDEIEEKFIRGSGPGGQKINKTSSCVELKHIKTGIIVKCQESRSQDQ
NRKIARSRMLEKLKQMFAPILSDANKKKEKQKKRKIETERKRKLKEDAMK
NRVEL
Run BLAST on NCBI

transcript from alignment at scaffold_305:17441..22125+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058071 ID=TCONS_00058071|Name=TCONS_00058071|organism=Clytia hemisphaerica|type=transcript|length=4685bp|location=Sequence derived from alignment at scaffold_305:17441..22125+ (Clytia hemisphaerica)
CTAAAAATTCacgaaaagaaagattttcagtGCGAGAACAACAAAAATGG
CCGCCGGAGTTAGCTGACAGTCTTTGAAACTCACTTTAAAAATGAGTTGA
AAATATACCAAAATATTAAGTTTTTTGACGATTTATAAATGTTAAGAAGA
AGTACAATGGCTGTTGCAAGGGGAATTATCTCTTACCACAGTGCTGGAGG
AAGGAGCATTGGTTCACCACAACTTACACTCACTGCACCGATGACACCAA
CAAAACAATATTTACACCAATTTTCTCTTCATACATCAAGCTTTTCGCCC
AAAACAACAAATGGAAAGGAATCATCTCTTTCAAACGTTATTGACCTTGT
AGAAGGGAAATGTGTTTCTaaagaacttgaagaaaaacCTGAAAGATTGT
TACAAAAACAACAATCAacagaagaagaagaatttcTCACATTAAATGAA
GATGAAATTGAAGAGAAATTTATCCGTGGCTCTGGCCCTGGTGGTCAAAA
GATTAATAAGACAAGCAGTTGTGTTGAACTGAAGCACATCAAAACAGGAA
TTATTGTCAAGGTATTGCTGaaataattataattttgatttataCTTGTG
ATGCAATTTTGACTCCGTAACATCCAGGTCTATAGAGTTGTAAACAGCAA
TCGCGGCATGGTCTATTGAAAAATCGTTTTGGATAAGTTTcatggctccg
aatggggttctaggtccccccaaaaaatttaggtcccccctaattGCTAA
TGCCTAAGTTTTAAAGgcccccccccacttttcagtaaggttcaggtccc
agttaAAACCTAAAGGTTCAAGTCCTTGCAAAaagtactttcaaggtttg
ggtcccagcaaagaaaaataatttggcACCAAATTATTTCGATTTCATGT
TATATATTTTGCAGACAGATAAAAGTAAAACGgtagaatatttaaaaaca
gaacattaaaaccaaacaaaaaaatatttttacaatttcttaattATTGT
AATTAGCCCCCAGAACTTTAGTGCAGCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTtaaatttcccccccccccccaaataagtgggggggggcAGAG
CCATGCAGTTTCCCATTTCCTCACTAATTCCTTTGCCGATTTTCTAGCGG
AAAAGTACAGTTAGGCAGTTTCGTGactaaacacaagattttccgtacct
ttagaaacaatccctttccaatctcatgcaGGTTATACTGGAAAAAGCAG
ACAGATACCGGAAAAGTGATAAGAATGAGGGTTCACttctgaaaaaaact
ttttgaatttgatgcTTCAAAATTATCATTGTTCTTTGTTAAATAAATAC
CTTAGGAGGGCTAAACTTCTGGCGGGTaggtaaaaaatatttgtaaggCA
GTCAGTCCTAACACCTTTGACTGTAGGGTGTTGTCCTTGCATTTTGTTCA
AATTATAAGTTTGTTAGAGATTATAAGCATTTGCAGCAATAAGACCTCAT
TTGTGTTGTTTAAATGCTCGAATCTCTGCCTTCAAATTGCTTGTCTGCTT
TGTACTGAAAGAGTCCCAAGACCCATGCTATTTGGGTCttaagttttgat
atttttaaaatgttcttaaatttgagatttttgtgaCTGTATCAttctaa
tttttttagaaatttgtatGATCTAGAACtggcaaaaccttaaaatgttc
ttagaatgctcttaaatttttggcaaaaaagccttaccgtcaactgctct
aacttgggagtatctgacaaaacatgggacggcaattcggccaccatttc
accgaacctccaaagtaatttgatttgagttaataaaTGGCGTATTAAAa
gatacacaatttctctttcgcaccgagtaggcttttaaatcgaaaaataa
aaaaaatccgtagtggaacacacacaAATGTCTGaacaaagaagaacaaa
ttagtggcaaaacgatggagcgtttggcGTCACTCgcacggcaagttaca
cacttgttatttgttaatccatCGGGCGATAGGTGGTTAGGCGCggacgt
tctctaattctccaatcggcatccagtcattttaaatgaaaacaaaaagt
taaaaagggtgcgctatcagtgaaatTTATTGTGACATGCTATGACAAAA
AGTGtggttgataaacttggtggaagtcaaaacaaatttattgtcaaaga
gatttaacagtaagtgaaaatacaggtcAGATATCAttcagtcccatgtt
tcgaccaattgtcccaagttagagcagttgacgatatGTTCTGATTCACT
TTGTTTTTGTAGAAGAATAATTTAGGCATACAAACTTTTGCaagcagaaa
tttttttgcaattttcacaaattttagcccttttcaCAAAAGTaaaagtc
tttgaaaattcttgaaagggcaattcgcaaaagtttattggtttaaaaag
ttagtttagaaaaataatatgaaaataattactcaaattttcttattgAT
GATAACAAGGGTTAAATTTAGTGTTAGATATTATGCGAAAGTCCATCAAA
TGTGGTTTGAGTACATTTGAACAATCAAAACACTGGTTTCATGCAccgaa
aatttgaattttttactaaaaatatactttattcacaaaaatttatgctt
gcgaaaaagaattttttgttacatttgcgaaagtaaatgttgtgaATTTA
GCCATTTTTCAACcttgcaaaagtttctgcttgcgaaagttAGTACGCCT
AAATTATATGTATAGAGTGTCTCACTGGCGTGCCAGTACAAGCTGGCAAC
CCACTCATAATCCTGTCACTCTTCTGgattgttaaaaagataatcggaat
cactgattgaaaaagtgtTATTTTCCTATCTGACTGGTAATTGAAAAGGG
TTGACAATATTTGACCAACCCACTACAGTGGTTATTAACCTTGATAAAAT
TGTCTTTAGTAAAAGCTCTATTATTCATATACTAGTAATCTTTATGAGTT
GCAAGCATAAAAATTACccgcaaaataacaaaaaatcaaCAGATCCTTAA
AAACTTCTTAGAAAAATTCCAGGCTGTTCTTTCAAAATTGAGATACCAAA
ATCAGTGCTTTGCTCAAAGTACTAACAATTTCAACTTGGCTCGATTGTGT
ATTGGACACTGTCGTTCAATAGTGTGTGATGTGAGATTATGGATTTAACA
CACTTACCAACAACTAATAAAATCATAACcaagaatgaaaaaataatctA
GCCTGAGCTTAACCTGATAAGACCTCCGTTCAAAAATCTCTATCCTAAAT
GTTTGATTGAGCACTGAGAAATTTGATTCAGTTCTCCATATTTAAACACA
CGAAGAAATTTGGCCATTTGGAGTTCCAAATACTATCAGTTCAATTATGA
TCTTCCTAATATGATTGCATGTGTACTTTTAGGCACGCTGCGTGGACACT
GTTTTTATGAAACACTGTAAGATAAAAATTTAAAGGGTTGAAATTGATCT
TCTATCAGGTTATCATGCCTCTAGTTTTTTGAAGTCAATACGTTATGTTT
TCACCGCTAATTTATGGAATCAAATGATCTATCATGATTGTGTGCTATCT
AGTTTAAGACAACATCTTTTAAAATATACCATTAATTTGGTGCTCTGGCT
AATGATTGCATGTGcaagataaaaaattgaaagggtGGAAAATATACCAT
TAGTATATAGTGCTTTTGCTAatgattttcttatttattttctcAGTGTC
AAGAAAGCAGATCACAGgatcaaaatcgaaaaattgctCGATCACGAATG
TTGGAGAAATTAAAACAAATGTTTGCACCTATATTGAGTGATGCCAACAA
AAAGAAGGAGAAACAGAAAAAACGGAAAATTGAGACTGAACGCAAACGAA
AGTTAAAAGAGGATGCTATGAAAAACAGAGTTGAACTCTAATTGAGATGT
GCCCCTACTTTATAGTGACAATATCCAAGCTAATCAAAATTGATGTTGAT
CACTAATGATAGTGAAGTGGTGGATATGTTACAAAATCATTTCCTAGGTT
GTTGGGAATAGATTTTGATTTGTTGATTGATGATCATGTAGAGTAATTCC
CTTAATGCTCAATTGTGATTTGAGATTATTTCCCCCATTGTTAAGCCTGC
TGgatctttagtttttttaagtttaattaTATACGAAATGATAATTTGTT
CATTTAAATTTAGTCTCAGTGTCACTAGATCTATTTTCTCTGTCAGGGAA
GATGGGTCGTTATCCAGTATTCCACCAGGGTAAAAAACCTGCCTTTTTTG
AATTTGGAAGTAGTTGCAACCATCTCTTTAAATCaataaaaccttgaaaa
aatgaGAATGGGAGACCCTTATTTGTAATGATACC

Coding sequence (CDS) from alignment at scaffold_305:17441..22125+

>TCONS_00058071 ID=TCONS_00058071|Name=TCONS_00058071|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_305:17441..22125+ (Clytia hemisphaerica)
ATGTTAAGAAGAAGTACAATGGCTGTTGCAAGGGGAATTATCTCTTACCA
CAGTGCTGGAGGAAGGAGCATTGGTTCACCACAACTTACACTCACTGCAC
CGATGACACCAACAAAACAATATTTACACCAATTTTCTCTTCATACATCA
AGCTTTTCGCCCAAAACAACAAATGGAAAGGAATCATCTCTTTCAAACGT
TATTGACCTTGTAGAAGGGAAATGTGTTTCTaaagaacttgaagaaaaac
CTGAAAGATTGTTACAAAAACAACAATCAacagaagaagaagaatttcTC
ACATTAAATGAAGATGAAATTGAAGAGAAATTTATCCGTGGCTCTGGCCC
TGGTGGTCAAAAGATTAATAAGACAAGCAGTTGTGTTGAACTGAAGCACA
TCAAAACAGGAATTATTGTCAAGTGTCAAGAAAGCAGATCACAGgatcaa
aatcgaaaaattgctCGATCACGAATGTTGGAGAAATTAAAACAAATGTT
TGCACCTATATTGAGTGATGCCAACAAAAAGAAGGAGAAACAGAAAAAAC
GGAAAATTGAGACTGAACGCAAACGAAAGTTAAAAGAGGATGCTATGAAA
AACAGAGTTGAACTCTAAATGTTAAGAAGAAGTACAATGGCTGTTGCAAG
GGGAATTATCTCTTACCACAGTGCTGGAGGAAGGAGCATTGGTTCACCAC
AACTTACACTCACTGCACCGATGACACCAACAAAACAATATTTACACCAA
TTTTCTCTTCATACATCAAGCTTTTCGCCCAAAACAACAAATGGAAAGGA
ATCATCTCTTTCAAACGTTATTGACCTTGTAGAAGGGAAATGTGTTTCTa
aagaacttgaagaaaaacCTGAAAGATTGTTACAAAAACAACAATCAaca
gaagaagaagaatttcTCACATTAAATGAAGATGAAATTGAAGAGAAATT
TATCCGTGGCTCTGGCCCTGGTGGTCAAAAGATTAATAAGACAAGCAGTT
GTGTTGAACTGAAGCACATCAAAACAGGAATTATTGTCAAGTGTCAAGAA
AGCAGATCACAGgatcaaaatcgaaaaattgctCGATCACGAATGTTGGA
GAAATTAAAACAAATGTTTGCACCTATATTGAGTGATGCCAACAAAAAGA
AGGAGAAACAGAAAAAACGGAAAATTGAGACTGAACGCAAACGAAAGTTA
AAAGAGGATGCTATGAAAAACAGAGTTGAACTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036595XLOC_036595Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058071-proteinTCONS_00058071-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058071-exon-scaffold_305-1491911889:17441..18001TCONS_00058071-exon-scaffold_305-1491911889:17441..18001Clytia hemisphaericaexon
TCONS_00058071-exon-scaffold_305-1510915933:17441..18001TCONS_00058071-exon-scaffold_305-1510915933:17441..18001Clytia hemisphaericaexon
TCONS_00058071-exon-scaffold_305-1575043694:17441..18001TCONS_00058071-exon-scaffold_305-1575043694:17441..18001Clytia hemisphaericaexon
TCONS_00058071-exon-scaffold_305-1491911889:21487..22125TCONS_00058071-exon-scaffold_305-1491911889:21487..22125Clytia hemisphaericaexon
TCONS_00058071-exon-scaffold_305-1510915933:21487..22125TCONS_00058071-exon-scaffold_305-1510915933:21487..22125Clytia hemisphaericaexon
TCONS_00058071-exon-scaffold_305-1575043694:21487..22125TCONS_00058071-exon-scaffold_305-1575043694:21487..22125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:17441..22125 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
112.448	121.594	147.019	147.523	31.236	22.8901	57.9013	56.6626	73.6701	67.2995	69.2034	70.3594	46.3093	43.2216	29.3542	34.2067	60.361	71.9223	33.8319	38.3097	74.4881	74.6576	61.2018	58.9627	81.9088	87.7152	60.2811	46.5214	41.4835	31.8203
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
Vocabulary: Molecular Function
TermDefinition
GO:0003747translation release factor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006415 translational termination
molecular_function GO:0003747 translation release factor activity
Blast
[Close]
BLAST of TCONS_00058071 vs. Swiss-Prot (Human)
Match: CL065 (Probable peptide chain release factor C12orf65, mitochondrial OS=Homo sapiens GN=C12orf65 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.147e-17
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  466 KFIRGSGPGGQKINKTSSCVELKHIKTGIIVKCQESRSQDQNRKIARSRMLEKLKQMF 639
            +F++G GPGGQ  NKTS+CV LKHI +GI+VKC ++RS DQNRK+AR  + EK+   +
Sbjct:   63 QFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
The following BLAST results are available for this feature:
BLAST of TCONS_00058071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL0657.147e-1756.90Probable peptide chain release factor C12orf65, mi... [more]
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