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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058083 ID=TCONS_00058083|Name=TCONS_00058083|organism=Clytia hemisphaerica|type=transcript|length=7054bpRun BLAST on NCBI protein sequence of TCONS_00058083-protein >TCONS_00058083-protein ID=TCONS_00058083-protein|Name=TCONS_00058083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp MAGERSKERIFALTSHGPISISPPPSDSSNLMDGNQGTPQGGIDREGRKGRun BLAST on NCBI transcript from alignment at scaffold_305:30493..40160- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058083 ID=TCONS_00058083|Name=TCONS_00058083|organism=Clytia hemisphaerica|type=transcript|length=9668bp|location=Sequence derived from alignment at scaffold_305:30493..40160- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_305:30493..40160- >TCONS_00058083 ID=TCONS_00058083|Name=TCONS_00058083|organism=Clytia hemisphaerica|type=CDS|length=21897bp|location=Sequence derived from alignment at scaffold_305:30493..40160- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058083 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 358.221 bits (918), Expect = 5.533e-107 Identity = 208/549 (37.89%), Postives = 332/549 (60.47%), Query Frame = 2
Query: 875 EMYQKASIASDSGNCSRIGSDILKRNGSAVDAAITVCFCIGVANRYSSGIGGGGYMLIYNRENKTFEALDFREAAPGRIKSNFYDKDYNASRYGGMSIGVPGEVKGLYTAWKKYGKLPWKDLVQPSVDLAANGIPASQGLIDIIELMDKHIQVDPGLSNLYLDKLGDR--IKLGTNVIDKELAN---TLAIIRDDPMDFYSGDLAARVVHDVREAGGVISFDDLERFEVRQTD-VIQSTIDNLNIHSLGAPSGGPVVMAIINILKGYNFKRDDMENPHKQPLTYHRIIEAMKFAFGEKAREGDPKFNPGYEKALMTNMTSEELGSKFRRLINDTSTLDLDNYYGNDYFMLPNESGTTHVSVIAENGDAVAVSTTINEWFGSTNRSSITGIIYNNEMNDFTIPQENQT--MPAAPWNGVRSGKRPASSMSPLILTDNSGNXXXXXXXXXXXRIIPAVAQVIMNKVWFEDDLGRAITRPRVYNFLQPPLTYVEGKSLETNLKSFLQKCNQSYEVVDPYNYAAVQAVYVEKKEGGIYAKSDWRKISGHSAGY 2497
+Y +A++A+D+ CS+IG D L+ GSAVDAAI C+G+ N +S GIGGG ++ IYN + E ++ RE AP + ++ S+ GG+S+ VPGE++G A +++G+LPW L QPS+ LA G P +GL +E I+ P L ++ DR ++ G + +LA+ TLAI + FY+G L A++V D++ AGG+++ +DL + + + ++ ++ ++ AP GPV+ I+NILKGYNF R+ +E+P ++ LTYHRI+EA +FA+ ++ GDPKF E ++ NMTSE ++ R I+D +T + +YY +++ P++ GT H+SV+AE+G AV+ ++TIN +FGS RS ++GI++NNEM+DF+ P +P +P N ++ GK+P SSM P I+ G V+MVVG GG +I A A I+ +WF D+ RA+ PR++N L P +T VE ++++ + + L+ + ++ + A VQA+ + GG A SD RK G AGY
Sbjct: 36 HVYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFNSS-EQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQPVLCEVFCR---DRKVLREGERLTLPQLADTYETLAI--EGAQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLYMPSAPLSGPVLALILNILKGYNFSRESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVDVTE--VVRNMTSEFFAAQLRAQISDDTTHPI-SYYKPEFYT-PDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDDFSSPSITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPNVTTVE-RNIDQAVTAALETRHHHTQIASTF-IAVVQAIV--RTAGGWAAASDSRK-GGEPAGY 569 The following BLAST results are available for this feature:
BLAST of TCONS_00058083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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