TCONS_00058106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058106
Unique NameTCONS_00058106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058106 ID=TCONS_00058106|Name=TCONS_00058106|organism=Clytia hemisphaerica|type=transcript|length=198bp
ACAATTAACTTTGGAATAGTTTATGACAAAAGGATCTAAAACTAAAAAGC
GTCGTGCAAAACGTTTAAATTCTTTCCCATTTGAAGTGAGCAATGGCCAA
TAGTATGCAGACGGCCATAAAGGTACAAAAAGAATGCCTTTTCCTTGGCA
GTTTTTTAAATGAGAGATAGTTCTTCCAATCAAATGTACTGGTGGACA
Run BLAST on NCBI

transcript from alignment at scaffold_305:167369..167566

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058106 ID=TCONS_00058106|Name=TCONS_00058106|organism=Clytia hemisphaerica|type=transcript|length=198bp|location=Sequence derived from alignment at scaffold_305:167369..167566 (Clytia hemisphaerica)
TGTCCACCAGTACATTTGATTGGAAGAACTATCTCTCATTTAAAAAACTG CCAAGGAAAAGGCATTCTTTTTGTACCTTTATGGCCGTCTGCATACTATT GGCCATTGCTCACTTCAAATGGGAAAGAATTTAAACGTTTTGCACGACGC TTTTTAGTTTTAGATCCTTTTGTCATAAACTATTCCAAAGTTAATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036619XLOC_036619Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058106-exon-scaffold_305-1491911889:167369..167566TCONS_00058106-exon-scaffold_305-1491911889:167369..167566Clytia hemisphaericaexon
TCONS_00058106-exon-scaffold_305-1510915933:167369..167566TCONS_00058106-exon-scaffold_305-1510915933:167369..167566Clytia hemisphaericaexon
TCONS_00058106-exon-scaffold_305-1575043694:167369..167566TCONS_00058106-exon-scaffold_305-1575043694:167369..167566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_305supercontigscaffold_305:167369..167566 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
ACAATTAACTTTGGAATAGTTTATGACAAAAGGATCTAAAACTAAAAAGCGTCGTGCAAAACGTTTAAATTCTTTCCCATTTGAAGTGAGCAATGGCCAATAGTATGCAGACGGCCATAAAGGTACAAAAAGAATGCCTTTTCCTTGGCAGTTTTTTAAATGAGAGATAGTTCTTCCAATCAAATGTACTGGTGGACA20406080100120140160180Sequence
Match NameE-valueIdentityDescription
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