TCONS_00058177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058177
Unique NameTCONS_00058177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058177 ID=TCONS_00058177|Name=TCONS_00058177|organism=Clytia hemisphaerica|type=transcript|length=573bp
atatgctcatgttatgcttaggaattctgcgaatctgagccttcatatgc
ttataagcgttatgcttataaaaaaaacatgtaatttatttcaaaatttc
tgaaattttttaatcaagtctTTATACAAGTGTAACAGtcctcttttaaa
gaaaataaagacttataaattcttgaaaaagaaatcatttcttgcgattc
tttaccatttttttggtaaagaatttaaagttttttcttcaCTTCTTTCG
ACATCAAAGGCACCGACATGATAGTTTTTTCGATGAATGGATTTTCTAGC
GTTTGGACCTTTGGAATTTTTAAACCGTAATATGGCTAATATGGGATAGG
GGTGAAAGATAGGATAAGAGAAAGATTTTGCATGATGGATGGATATCAGC
CACGAGGTTCTGTGTTCATCCTGAGATATAGAATTCTTCTATTCTTCTTG
GTCACGTAGACGAAGAGGTTCAGCAAATATGTTGTTGTAGGCACTTTTTT
TGCTCCTTAACTTTAACCACTTGCGTACCCAGCAAGACCTTTTAAGCTCG
ACTTTTCTTTTTCGATTATTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_307:89886..90458

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058177 ID=TCONS_00058177|Name=TCONS_00058177|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at scaffold_307:89886..90458 (Clytia hemisphaerica)
GGAAATAATCGAAAAAGAAAAGTCGAGCTTAAAAGGTCTTGCTGGGTACG
CAAGTGGTTAAAGTTAAGGAGCAAAAAAAGTGCCTACAACAACATATTTG
CTGAACCTCTTCGTCTACGTGACCAAGAAGAATAGAAGAATTCTATATCT
CAGGATGAACACAGAACCTCGTGGCTGATATCCATCCATCATGCAAAATC
TTTCTCTTATCCTATCTTTCACCCCTATCCCATATTAGCCATATTACGGT
TTAAAAATTCCAAAGGTCCAAACGCTAGAAAATCCATTCATCGAAAAAAC
TATCATGTCGGTGCCTTTGATGTCGAAAGAAGtgaagaaaaaactttaaa
ttctttaccaaaaaaatggtaaagaatcgcaagaaatgatttctttttca
agaatttataagtctttattttctttaaaagaggaCTGTTACACTTGTAT
AAagacttgattaaaaaatttcagaaattttgaaataaattacatgtttt
ttttataagcataacgcttataagcatatgaaggctcagattcgcagaat
tcctaagcataacatgagcatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036658XLOC_036658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058177-exon-scaffold_307-1491911889:89886..90458TCONS_00058177-exon-scaffold_307-1491911889:89886..90458Clytia hemisphaericaexon
TCONS_00058177-exon-scaffold_307-1510915933:89886..90458TCONS_00058177-exon-scaffold_307-1510915933:89886..90458Clytia hemisphaericaexon
TCONS_00058177-exon-scaffold_307-1575043694:89886..90458TCONS_00058177-exon-scaffold_307-1575043694:89886..90458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_307supercontigscaffold_307:89886..90458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0988842	0.211509	2.3756	2.2697	0.59925	0.313616	0	0.70648	0.164792	0.344114	0.70732	0.624026	1.12136	1.1948	0.280807	0.185558	0.0744884	0.6026	0.621653	0.669741	0.199531	0.698586	0	0.1016	0.113575	0.753289	0.40505	0.300468	0.715515	0.330655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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