TCONS_00058339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058339
Unique NameTCONS_00058339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058339 ID=TCONS_00058339|Name=TCONS_00058339|organism=Clytia hemisphaerica|type=transcript|length=261bp
TAGGGATTAGGAAAAGGACAATTTCCAGATATTACAAATTGTGTTTTCAG
TTCGTTAAACTTGATAGCATATTCATTTCCGTATTGGAGACAGGTATTTA
GCAGACGCTGAAGCTGTGTTAGAGTTGGACTCATCAAGATGATATCATCC
GCGAATGCTATTATTGAAGTATTAATGTTTCCTGGAAGAAATGTACCAAT
GTTTAGCTCTTGCACTCTATGCAATAGGTCCTCGGTgtataaattgtaaa
gaaaagGTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_309:293538..293798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058339 ID=TCONS_00058339|Name=TCONS_00058339|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at scaffold_309:293538..293798 (Clytia hemisphaerica)
AGCACcttttctttacaatttatacACCGAGGACCTATTGCATAGAGTGC
AAGAGCTAAACATTGGTACATTTCTTCCAGGAAACATTAATACTTCAATA
ATAGCATTCGCGGATGATATCATCTTGATGAGTCCAACTCTAACACAGCT
TCAGCGTCTGCTAAATACCTGTCTCCAATACGGAAATGAATATGCTATCA
AGTTTAACGAACTGAAAACACAATTTGTAATATCTGGAAATTGTCCTTTT
CCTAATCCCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036748XLOC_036748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058339-exon-scaffold_309-1491911889:293538..293798TCONS_00058339-exon-scaffold_309-1491911889:293538..293798Clytia hemisphaericaexon
TCONS_00058339-exon-scaffold_309-1510915933:293538..293798TCONS_00058339-exon-scaffold_309-1510915933:293538..293798Clytia hemisphaericaexon
TCONS_00058339-exon-scaffold_309-1575043694:293538..293798TCONS_00058339-exon-scaffold_309-1575043694:293538..293798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:293538..293798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.367176	0	0	0.872022	0.689083	0.83135	0.7783	0.544906	2.02486	0.655127	0.861309	4.18973	1.3506	2.23564	0.501255	0	1.27957	0	4.3158	0.625202	1.82971	0.741418	0	0.694262	0.619612	4.48277	6.87187	0.717713	1.46247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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