TCONS_00058353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058353
Unique NameTCONS_00058353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058353 ID=TCONS_00058353|Name=TCONS_00058353|organism=Clytia hemisphaerica|type=transcript|length=532bp
TACCTCCTTTGTGGATTGGTGTAATTGTGCTTTGTTTCAGTTCGTCTGGG
ACTATTCCTTTGTCAAGGCTTTTCCTCCAAAGGATGGAAAGAGGAGTGGA
TAATTCTTCTTTACATTGTTTTAAGAGAATTGCAGGAAGGCCGTCAGGAC
CAGGAGCTGCACATTGAGATAACTCCTTTATTGCTTTGACAAGATCATTC
TCTGTGACTTGGAGGTCTGGGATGTTGTTTACATTGATTTCATTATCTTG
GCGTTGTGTTGTATTATCTGGTTTTGGAACACTGAAGACATATTGCTTTG
ATAGGATTTCAGCCATTTCTTTATTCCTTTGTGTCAGTTTACCATTCTCA
TTCATGAGAGGGCCAATTTTTGTCTttatctttgatttcttttttgcata
tgaaaagaaatactttgaatttttatttattgagTTTATTGCTTTAGTTT
CCATGTAGGGCTTGAAATCATTGAAAGACTTTTGCAGGTCCTTTTCTATT
TGAAAAAGTTCCTTTGTTATTTTGCCTTTCTT
Run BLAST on NCBI

protein sequence of TCONS_00058353-protein

>TCONS_00058353-protein ID=TCONS_00058353-protein|Name=TCONS_00058353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
KKGKITKELFQIEKDLQKSFNDFKPYMETKAINSINKNSKYFFSYAKKKS
KIKTKIGPLMNENGKLTQRNKEMAEILSKQYVFSVPKPDNTTQRQDNEIN
VNNIPDLQVTENDLVKAIKELSQCAAPGPDGLPAILLKQCKEELSTPLSI
LWRKSLDKGIVPDELKQSTITPIHKGG
Run BLAST on NCBI

transcript from alignment at scaffold_309:901458..901989

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058353 ID=TCONS_00058353|Name=TCONS_00058353|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_309:901458..901989 (Clytia hemisphaerica)
AAGAAAGGCAAAATAACAAAGGAACTTTTTCAAATAGAAAAGGACCTGCA AAAGTCTTTCAATGATTTCAAGCCCTACATGGAAACTAAAGCAATAAAct caataaataaaaattcaaagtatttcttttcatatgcaaaaaagaaatca aagataaAGACAAAAATTGGCCCTCTCATGAATGAGAATGGTAAACTGAC ACAAAGGAATAAAGAAATGGCTGAAATCCTATCAAAGCAATATGTCTTCA GTGTTCCAAAACCAGATAATACAACACAACGCCAAGATAATGAAATCAAT GTAAACAACATCCCAGACCTCCAAGTCACAGAGAATGATCTTGTCAAAGC AATAAAGGAGTTATCTCAATGTGCAGCTCCTGGTCCTGACGGCCTTCCTG CAATTCTCTTAAAACAATGTAAAGAAGAATTATCCACTCCTCTTTCCATC CTTTGGAGGAAAAGCCTTGACAAAGGAATAGTCCCAGACGAACTGAAACA AAGCACAATTACACCAATCCACAAAGGAGGTA

Coding sequence (CDS) from alignment at scaffold_309:901458..901989

>TCONS_00058353 ID=TCONS_00058353|Name=TCONS_00058353|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_309:901458..901989 (Clytia hemisphaerica)
AAGAAAGGCAAAATAACAAAGGAACTTTTTCAAATAGAAAAGGACCTGCA
AAAGTCTTTCAATGATTTCAAGCCCTACATGGAAACTAAAGCAATAAAct
caataaataaaaattcaaagtatttcttttcatatgcaaaaaagaaatca
aagataaAGACAAAAATTGGCCCTCTCATGAATGAGAATGGTAAACTGAC
ACAAAGGAATAAAGAAATGGCTGAAATCCTATCAAAGCAATATGTCTTCA
GTGTTCCAAAACCAGATAATACAACACAACGCCAAGATAATGAAATCAAT
GTAAACAACATCCCAGACCTCCAAGTCACAGAGAATGATCTTGTCAAAGC
AATAAAGGAGTTATCTCAATGTGCAGCTCCTGGTCCTGACGGCCTTCCTG
CAATTCTCTTAAAACAATGTAAAGAAGAATTATCCACTCCTCTTTCCATC
CTTTGGAGGAAAAGCCTTGACAAAGGAATAGTCCCAGACGAACTGAAACA
AAGCACAATTACACCAATCCACAAAGGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036762XLOC_036762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058353-exon-scaffold_309-1491911889:901458..901989TCONS_00058353-exon-scaffold_309-1491911889:901458..901989Clytia hemisphaericaexon
TCONS_00058353-exon-scaffold_309-1510915933:901458..901989TCONS_00058353-exon-scaffold_309-1510915933:901458..901989Clytia hemisphaericaexon
TCONS_00058353-exon-scaffold_309-1575043694:901458..901989TCONS_00058353-exon-scaffold_309-1575043694:901458..901989Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058353-proteinTCONS_00058353-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:901458..901989 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.79844 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53773 1.49953 2.36292 2.79844 0.888738 0.702293 0.141214 0.528813 0.370234 0.114649 0 0.43891 0.2922 0.227589 0.561328 0.803188 0.16491 0.507083 0 0.610907 0.743385 0.310797 0.377815 0 0.707571 0.736738 0.30122 0 0.243824 0.745253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
back to top