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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058355 ID=TCONS_00058355|Name=TCONS_00058355|organism=Clytia hemisphaerica|type=transcript|length=1769bp
CCCGTTTTCTGAATTAGagctaaaatattttcaaccgaaGAATTTCCACA
ATTTCtatgtcaaaaagttaaaatttcagCATGAAGTAGCCaacaaagtt
ttatttctagacctaaaaatttgataatcacaataaatattttttttgat
taacaagaaaataaagactTTCATGACCCAAAATTCaactttgaggacct
tatttCGAGAGTTTTTGTAAATTCATTCAAATGGTGGAAAGTAAACAttg
attttcggaaaatttcttACAATAACTTCTTTAATAAAACAAAAGCCGAT
GCTTCAAAACTAAATCGATTTCCTGACTATAGGCCTTAAACCTACcgtat
caaaataaatttaaagtatataaaaatATGATCAACTATAATTTATTTAT
ACAAGCAATATCGCTGACAGTTCGTTTCCAAGTTAATTTCCAAAgcaatt
tattgaattttattgaaatgaaatgcTCTGAAACTTGACCTTACAGTATC
ATCACTATCACGAGAAATAGTGTCCAAGAGAGTCAAATTATGCTTAGTCC
TCTTCTGGTACTGGCTTTGTAAGAATTatagattgggcttttccaaaaaa
attggaatATGGGGGTGAAGGATagaacaattttcagtgatttacccccc
ggacaacgggttACACcacggacaagcatcagttgacNACTTTTTTGGGA
CCCCTGGACAATACATCCtccctccaccccccatgaacggattttttctg
gaagagcccaatgataGATTTTAGACACCATACCAGTGGtaatattcaat
attcaataaTCACATACTTcattcacacaaaaatcatCAACCATTTACGA
ACGCATTTCAACTTCACTTGTCCTTCTTTTTCGGAGGAAAGAACACCAAC
ACAAAAGCCATTAAAGCCACTGATAAAACAATGGTTACTCTCAACGAttg
ttgctttgattcttcCCTTGATATATTTTGTCTCAAAGAATCTTTATTTT
GTCGATGGTTTCTTTTTTGTAAAGAGCCTTGATAGTGTGATTTTGTCCAG
GTGTCAAATTGCTGACTTCGTTGTTGTATAGAACCTCTGACACTATCCTT
TTCGATAACATCAGAattgaaaacacttttttgGTCCTTATAATTATTGT
GTATCTTGAGTTTTTGATCGTACTCTTTCCGCGATTTATTATTGCCTAAA
ATTTTATAAGCTTCGTTCAATTCTGAAAATTTGGCATGTGTGTCGGAAGT
ATTTTCAGAATCCAAATTTCGATCAGGATGCAAGACTAATGATTGTTTGT
AGTAAGCTGCTTTGATTTGCTTTTGACTAGCATTGGGTGATACTTTTAAT
ACACTGTAATGATTGGAACACGAAACATCTCCAGAGGATAATTGTCGTCT
TGTTGATAAGCTCCAAAGTAATCGTTGATTAGACCTACAACACCATATCA
ATTTCATATCACTTTGTCActgaaagaataaaaagaatattAGGTCAATC
ATTAAAATTCTGCAAAAACTAGCCACCCAGGCATCGCATTTGATCACGTA
TGTTCCCTTCAACTAACAAGCAATGATTCGATGCGGGTCGAATGAAAATA
TTGTATGCTAGTTAAGAGAACGTACTTTTGAAAATCGTACTGACGAAATT
TCGACGAAGTATTTATATTAAATATCATGTCACAAAGTTAAGACGTAAAG
TAAAGAAGTATATAttatcaactgatgaatgcatATACAAGAAACGTAAA
GTATtgattgagaagaaat Run BLAST on NCBI protein sequence of TCONS_00058355-protein >TCONS_00058355-protein ID=TCONS_00058355-protein|Name=TCONS_00058355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MKLIWCCRSNQRLLWSLSTRRQLSSGDVSCSNHYSVLKVSPNASQKQIKA
AYYKQSLVLHPDRNLDSENTSDTHAKFSELNEAYKILGNNKSRKEYDQKL
KIHNNYKDQKSVFNSDVIEKDSVRGSIQQRSQQFDTWTKSHYQGSLQKRN
HRQNKDSLRQNISREESKQQSLRVTIVLSVALMAFVLVFFPPKKKDK Run BLAST on NCBI transcript from alignment at scaffold_309:920682..922450 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058355 ID=TCONS_00058355|Name=TCONS_00058355|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at scaffold_309:920682..922450 (Clytia hemisphaerica)
atttcttctcaatcaATACTTTACGTTTCTTGTATatgcattcatcagtt
gataaTATATACTTCTTTACTTTACGTCTTAACTTTGTGACATGATATTT
AATATAAATACTTCGTCGAAATTTCGTCAGTACGATTTTCAAAAGTACGT
TCTCTTAACTAGCATACAATATTTTCATTCGACCCGCATCGAATCATTGC
TTGTTAGTTGAAGGGAACATACGTGATCAAATGCGATGCCTGGGTGGCTA
GTTTTTGCAGAATTTTAATGATTGACCTaatattctttttattctttcag
TGACAAAGTGATATGAAATTGATATGGTGTTGTAGGTCTAATCAACGATT
ACTTTGGAGCTTATCAACAAGACGACAATTATCCTCTGGAGATGTTTCGT
GTTCCAATCATTACAGTGTATTAAAAGTATCACCCAATGCTAGTCAAAAG
CAAATCAAAGCAGCTTACTACAAACAATCATTAGTCTTGCATCCTGATCG
AAATTTGGATTCTGAAAATACTTCCGACACACATGCCAAATTTTCAGAAT
TGAACGAAGCTTATAAAATTTTAGGCAATAATAAATCGCGGAAAGAGTAC
GATCAAAAACTCAAGATACACAATAATTATAAGGACcaaaaaagtgtttt
caatTCTGATGTTATCGAAAAGGATAGTGTCAGAGGTTCTATACAACAAC
GAAGTCAGCAATTTGACACCTGGACAAAATCACACTATCAAGGCTCTTTA
CAAAAAAGAAACCATCGACAAAATAAAGATTCTTTGAGACAAAATATATC
AAGGgaagaatcaaagcaacaaTCGTTGAGAGTAACCATTGTTTTATCAG
TGGCTTTAATGGCTTTTGTGTTGGTGTTCTTTCCTCCGAAAAAGAAGGAC
AAGTGAAGTTGAAATGCGTTCGTAAATGGTTGatgatttttgtgtgaatg
AAGTATGTGAttattgaatattgaatattaCCACTGGTATGGTGTCTAAA
ATCtatcattgggctcttccagaaaaaatccgttcatggggggtggaggg
aGGATGTATTGTCCAGGGGTCCCAAAAAAGTNgtcaactgatgcttgtcc
gtgGTGTaacccgttgtccggggggtaaatcactgaaaattgttctATCC
TTCACCCCCATattccaatttttttggaaaagcccaatctatAATTCTTA
CAAAGCCAGTACCAGAAGAGGACTAAGCATAATTTGACTCTCTTGGACAC
TATTTCTCGTGATAGTGATGATACTGTAAGGTCAAGTTTCAGAgcatttc
atttcaataaaattcaataaattgcTTTGGAAATTAACTTGGAAACGAAC
TGTCAGCGATATTGCTTGTATAAATAAATTATAGTTGATCATatttttat
atactttaaatttattttgatacgGTAGGTTTAAGGCCTATAGTCAGGAA
ATCGATTTAGTTTTGAAGCATCGGCTTTTGTTTTATTAAAGAAGTTATTG
TaagaaattttccgaaaatcaaTGTTTACTTTCCACCATTTGAATGAATT
TACAAAAACTCTCGaaataaggtcctcaaagttGAATTTTGGGTCATGAA
agtctttattttcttgttaatcaaaaaaaatatttattgtgattatcaaa
tttttaggtctagaaataaaactttgttGGCTACTTCATGctgaaatttt
aactttttgacataGAAATTGTGGAAATTCttcggttgaaaatattttag
ctCTAATTCAGAAAACGGG Coding sequence (CDS) from alignment at scaffold_309:920682..922450 >TCONS_00058355 ID=TCONS_00058355|Name=TCONS_00058355|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_309:920682..922450 (Clytia hemisphaerica)
ATGAAATTGATATGGTGTTGTAGGTCTAATCAACGATTACTTTGGAGCTT
ATCAACAAGACGACAATTATCCTCTGGAGATGTTTCGTGTTCCAATCATT
ACAGTGTATTAAAAGTATCACCCAATGCTAGTCAAAAGCAAATCAAAGCA
GCTTACTACAAACAATCATTAGTCTTGCATCCTGATCGAAATTTGGATTC
TGAAAATACTTCCGACACACATGCCAAATTTTCAGAATTGAACGAAGCTT
ATAAAATTTTAGGCAATAATAAATCGCGGAAAGAGTACGATCAAAAACTC
AAGATACACAATAATTATAAGGACcaaaaaagtgttttcaatTCTGATGT
TATCGAAAAGGATAGTGTCAGAGGTTCTATACAACAACGAAGTCAGCAAT
TTGACACCTGGACAAAATCACACTATCAAGGCTCTTTACAAAAAAGAAAC
CATCGACAAAATAAAGATTCTTTGAGACAAAATATATCAAGGgaagaatc
aaagcaacaaTCGTTGAGAGTAACCATTGTTTTATCAGTGGCTTTAATGG
CTTTTGTGTTGGTGTTCTTTCCTCCGAAAAAGAAGGACAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058355-exon-scaffold_309-1491911889:920682..922450 | TCONS_00058355-exon-scaffold_309-1491911889:920682..922450 | Clytia hemisphaerica | exon |
| TCONS_00058355-exon-scaffold_309-1510915933:920682..922450 | TCONS_00058355-exon-scaffold_309-1510915933:920682..922450 | Clytia hemisphaerica | exon |
| TCONS_00058355-exon-scaffold_309-1575043694:920682..922450 | TCONS_00058355-exon-scaffold_309-1575043694:920682..922450 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:920682..922450 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001623 | DnaJ_domain |
Blast
The following BLAST results are available for this feature:
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