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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058358 ID=TCONS_00058358|Name=TCONS_00058358|organism=Clytia hemisphaerica|type=transcript|length=1883bp
ATCTCGGATTCTCTTGGAATCTTGATGGaagagaaaagtttttcatattt
tgtgtCCTACCTTTTGGATTGTCTTCTGCCCCAATGATTTTCACTAAATT
GCTGAGACCCTTGGTCTCCTACTGGCACGACCATGGCATTAAGATATGCG
TTTTTCTCGACGATGGGGGCGGGACAGAGTCTAATTCAGTAAAAGCCATT
TGGAGCTCCAAAATTTGTCAGGCGGTCACTTAAATCGTCTGGTTTTGTAG
TAAACGAAGAAAAATCTGTTTGGCACCCCCAGAAACGACTGACATGGCTG
GGAGTAATTATCGACTTCTCAGAGAACGCCTACTTTATCACAGAAAAAAG
GATCGAAGCCTTAATTGATTTGATAATCGAGACCCTAACCCTGAAACGAG
TTACATCtagaattttgtcaaaagtAGCAGGCTCTATAATTTCTATGAAA
TTTGTATTAGGCGATATTACTCAATTAAAATCTCGTTACTTTTACGAAGC
AATCGATAGTGAGGTGGCTTGGGACGCTCCCATTTCACTAAAGAAATTCC
CACAGGCAATTAGAGAGCTTGAATTTTGGTTGGGAAATTTACGTCGGCTT
AATCACAGATTTATTTCGGAGCACAGGGCCACCTTTGTAAACGTTTATTC
TGACGCAAGTGATTTTGGTATCGGGAGTCATATCCCAGCCCTAGGGGCGG
AAAGCCATAGAAATCTTGACCCAAAAGAGCAAGGTCTTAGCTCAACATGG
AGAGAACTTTCGGCTATTTTATACAGTCTTCGATCATTTAAGCAGCTTCT
AACGAGACAATCCATTAACTGGTTCACAGACAATTTTGCCGCTTCACTCA
TCGTCTCAAAAGGTAGTCGTAAAAAACATCTGCAAGACCTTGCCCTtgac
atattcaatttttgtgCAGCTAGTTTAATTACCCTGAAAATAAACTGGAT
CCCAAGGGAGGAGAACGAGACAGCAGACGAAATTTCTAAGTATATTGACT
TTGACGACTGGCAAATTACAGACGAATTCTTTGCCTTTTTGAACAAACGT
TGGGGTCCTTTCTCAGTAGATCGCTTTGCACGCCCAGAAAACACAAAATT
GCCAAGGTtcaattcgaaattttttgtcccAGGCTCCGAAGCAGTGGACG
CATTTTCAGAAAACTGGTCCAAGTCCAACGAGATAAATTACGTAGTTCCA
CCGGTCGATCTTATCCCAGAAGCCCTAAAGTTTATCTTACATAGTCAATG
CAAAGGTACCCTCGTGATCCCCTTGTGGAAATCTGCCCCATTTTGGTCTA
TGATCCGAGACGAATTCTACAGTAGAATGTTAGTAGAATCTATAATCATC
ACAAAAGGGAGAGAGATCCTTGAGAAGCCAACTAACGAACTTATAATGCT
ATCCCCAGACAAATACAGGGGCTCAATGATTGCGTTCAAATTCGATTCCA
AAAACATTATCAGATAATGTATTTTCGTTATCGTCTGAAAGATCATATAA
AATCTTACCTCTTCTGCTGGGTCCCTCACCCACGGAGAAGAAAGGGCGGA
AACACGTACAAATCTTCCACTGGGTTCCTGACCCATGGGGAAGCTTCTGC
TGAGTCCTTGACTCATGGGGAAGAATTGCGTCGTGGACCAAATTCATTTC
GTGCTCGGCACACAACGACTTCAAAATCTTCTGCTGGGTCCCTGACCCAT
GGGGAAGCTTCTGCTGAGCCCTTGACTCATGGGGAAGAATTGCGTCCAAG
AACAAACTCATTTTGTGCCCGGCACACAACGACTCTAAAATCTTCTGCTG
GGTCCCTGACCCACGGGGAAGTACTTAAAAATCTTCTGCTGGGTCCCTGA
CCCATGGGGAAGTACGTATATGGacgaaaaaat Run BLAST on NCBI protein sequence of TCONS_00058358-protein >TCONS_00058358-protein ID=TCONS_00058358-protein|Name=TCONS_00058358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MKFVLGDITQLKSRYFYEAIDSEVAWDAPISLKKFPQAIRELEFWLGNLR
RLNHRFISEHRATFVNVYSDASDFGIGSHIPALGAESHRNLDPKEQGLSS
TWRELSAILYSLRSFKQLLTRQSINWFTDNFAASLIVSKGSRKKHLQDLA
LDIFNFCAASLITLKINWIPREENETADEISKYIDFDDWQITDEFFAFLN
KRWGPFSVDRFARPENTKLPRFNSKFFVPGSEAVDAFSENWSKSNEINYV
VPPVDLIPEALKFILHSQCKGTLVIPLWKSAPFWSMIRDEFYSRMLVESI
IITKGREILEKPTNELIMLSPDKYRGSMIAFKFDSKNIIR Run BLAST on NCBI transcript from alignment at scaffold_309:946284..948166 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058358 ID=TCONS_00058358|Name=TCONS_00058358|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at scaffold_309:946284..948166 (Clytia hemisphaerica)
attttttcgtCCATATACGTACTTCCCCATGGGTCAGGGACCCAGCAGAA
GATTTTTAAGTACTTCCCCGTGGGTCAGGGACCCAGCAGAAGATTTTAGA
GTCGTTGTGTGCCGGGCACAAAATGAGTTTGTTCTTGGACGCAATTCTTC
CCCATGAGTCAAGGGCTCAGCAGAAGCTTCCCCATGGGTCAGGGACCCAG
CAGAAGATTTTGAAGTCGTTGTGTGCCGAGCACGAAATGAATTTGGTCCA
CGACGCAATTCTTCCCCATGAGTCAAGGACTCAGCAGAAGCTTCCCCATG
GGTCAGGAACCCAGTGGAAGATTTGTACGTGTTTCCGCCCTTTCTTCTCC
GTGGGTGAGGGACCCAGCAGAAGAGGTAAGATTTTATATGATCTTTCAGA
CGATAACGAAAATACATTATCTGATAATGTTTTTGGAATCGAATTTGAAC
GCAATCATTGAGCCCCTGTATTTGTCTGGGGATAGCATTATAAGTTCGTT
AGTTGGCTTCTCAAGGATCTCTCTCCCTTTTGTGATGATTATAGATTCTA
CTAACATTCTACTGTAGAATTCGTCTCGGATCATAGACCAAAATGGGGCA
GATTTCCACAAGGGGATCACGAGGGTACCTTTGCATTGACTATGTAAGAT
AAACTTTAGGGCTTCTGGGATAAGATCGACCGGTGGAACTACGTAATTTA
TCTCGTTGGACTTGGACCAGTTTTCTGAAAATGCGTCCACTGCTTCGGAG
CCTgggacaaaaaatttcgaattgaACCTTGGCAATTTTGTGTTTTCTGG
GCGTGCAAAGCGATCTACTGAGAAAGGACCCCAACGTTTGTTCAAAAAGG
CAAAGAATTCGTCTGTAATTTGCCAGTCGTCAAAGTCAATATACTTAGAA
ATTTCGTCTGCTGTCTCGTTCTCCTCCCTTGGGATCCAGTTTATTTTCAG
GGTAATTAAACTAGCTGcacaaaaattgaatatgtcaAGGGCAAGGTCTT
GCAGATGTTTTTTACGACTACCTTTTGAGACGATGAGTGAAGCGGCAAAA
TTGTCTGTGAACCAGTTAATGGATTGTCTCGTTAGAAGCTGCTTAAATGA
TCGAAGACTGTATAAAATAGCCGAAAGTTCTCTCCATGTTGAGCTAAGAC
CTTGCTCTTTTGGGTCAAGATTTCTATGGCTTTCCGCCCCTAGGGCTGGG
ATATGACTCCCGATACCAAAATCACTTGCGTCAGAATAAACGTTTACAAA
GGTGGCCCTGTGCTCCGAAATAAATCTGTGATTAAGCCGACGTAAATTTC
CCAACCAAAATTCAAGCTCTCTAATTGCCTGTGGGAATTTCTTTAGTGAA
ATGGGAGCGTCCCAAGCCACCTCACTATCGATTGCTTCGTAAAAGTAACG
AGATTTTAATTGAGTAATATCGCCTAATACAAATTTCATAGAAATTATAG
AGCCTGCTacttttgacaaaattctaGATGTAACTCGTTTCAGGGTTAGG
GTCTCGATTATCAAATCAATTAAGGCTTCGATCCTTTTTTCTGTGATAAA
GTAGGCGTTCTCTGAGAAGTCGATAATTACTCCCAGCCATGTCAGTCGTT
TCTGGGGGTGCCAAACAGATTTTTCTTCGTTTACTACAAAACCAGACGAT
TTAAGTGACCGCCTGACAAATTTTGGAGCTCCAAATGGCTTTTACTGAAT
TAGACTCTGTCCCGCCCCCATCGTCGAGAAAAACGCATATCTTAATGCCA
TGGTCGTGCCAGTAGGAGACCAAGGGTCTCAGCAATTTAGTGAAAATCAT
TGGGGCAGAAGACAATCCAAAAGGTAGGacacaaaatatgaaaaactttt
ctcttCCATCAAGATTCCAAGAGAATCCGAGAT Coding sequence (CDS) from alignment at scaffold_309:946284..948166 >TCONS_00058358 ID=TCONS_00058358|Name=TCONS_00058358|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_309:946284..948166 (Clytia hemisphaerica)
TTATCTGATAATGTTTTTGGAATCGAATTTGAACGCAATCATTGAGCCCC
TGTATTTGTCTGGGGATAGCATTATAAGTTCGTTAGTTGGCTTCTCAAGG
ATCTCTCTCCCTTTTGTGATGATTATAGATTCTACTAACATTCTACTGTA
GAATTCGTCTCGGATCATAGACCAAAATGGGGCAGATTTCCACAAGGGGA
TCACGAGGGTACCTTTGCATTGACTATGTAAGATAAACTTTAGGGCTTCT
GGGATAAGATCGACCGGTGGAACTACGTAATTTATCTCGTTGGACTTGGA
CCAGTTTTCTGAAAATGCGTCCACTGCTTCGGAGCCTgggacaaaaaatt
tcgaattgaACCTTGGCAATTTTGTGTTTTCTGGGCGTGCAAAGCGATCT
ACTGAGAAAGGACCCCAACGTTTGTTCAAAAAGGCAAAGAATTCGTCTGT
AATTTGCCAGTCGTCAAAGTCAATATACTTAGAAATTTCGTCTGCTGTCT
CGTTCTCCTCCCTTGGGATCCAGTTTATTTTCAGGGTAATTAAACTAGCT
GcacaaaaattgaatatgtcaAGGGCAAGGTCTTGCAGATGTTTTTTACG
ACTACCTTTTGAGACGATGAGTGAAGCGGCAAAATTGTCTGTGAACCAGT
TAATGGATTGTCTCGTTAGAAGCTGCTTAAATGATCGAAGACTGTATAAA
ATAGCCGAAAGTTCTCTCCATGTTGAGCTAAGACCTTGCTCTTTTGGGTC
AAGATTTCTATGGCTTTCCGCCCCTAGGGCTGGGATATGACTCCCGATAC
CAAAATCACTTGCGTCAGAATAAACGTTTACAAAGGTGGCCCTGTGCTCC
GAAATAAATCTGTGATTAAGCCGACGTAAATTTCCCAACCAAAATTCAAG
CTCTCTAATTGCCTGTGGGAATTTCTTTAGTGAAATGGGAGCGTCCCAAG
CCACCTCACTATCGATTGCTTCGTAAAAGTAACGAGATTTTAATTGAGTA
ATATCGCCTAATACAAATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058358-exon-scaffold_309-1491911889:946284..948166 | TCONS_00058358-exon-scaffold_309-1491911889:946284..948166 | Clytia hemisphaerica | exon |
| TCONS_00058358-exon-scaffold_309-1510915933:946284..948166 | TCONS_00058358-exon-scaffold_309-1510915933:946284..948166 | Clytia hemisphaerica | exon |
| TCONS_00058358-exon-scaffold_309-1575043694:946284..948166 | TCONS_00058358-exon-scaffold_309-1575043694:946284..948166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:946284..948166 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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