TCONS_00058364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058364
Unique NameTCONS_00058364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058364 ID=TCONS_00058364|Name=TCONS_00058364|organism=Clytia hemisphaerica|type=transcript|length=1123bp
ttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTAGA
TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA
ATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTCAACAAGAT
GATGATTTGGAGAGTGGATTTGATGATACAGCAGATCAACATAAGAGAAG
TTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGACA
TTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGGA
TTTGATGATACAGCAGcTTCTATTGCACGCCCTATTAGGAAAGCCAAGAT
GAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGGGAACCAGGAA
TTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCCTCA
AacAACAATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTAT
TATGTGTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATA
GGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCC
GGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGAAAATAT
ACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAA
AGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTTTATATG
GTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGACAATAAC
AATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaacaaaaaca
aaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTC
CTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTTGAGGAA
GTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCTGGTCCG
gaagcttatttttcaaatattttgttagctttttcctttgttgccatcaa
aagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagtactcct
cttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:62..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058364 ID=TCONS_00058364|Name=TCONS_00058364|organism=Clytia hemisphaerica|type=transcript|length=3459bp|location=Sequence derived from alignment at scaffold_31:62..3520+ (Clytia hemisphaerica)
ttttcattcacTTTGAAGTTTATtgattatattatttttatctACTTAGA TCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAA ATGATGAAATGGACATTCTCCATAATAAGGCTGCGGTCACTCAACAAGAT GATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGagaaaatctttac aaatagaaattATCGTTATTTTTCTACGGTTCtctttttctattgttatt tttcGAAGTTTATtgattatattatttttatctACTTAGATCAACATAAA AGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAAT GGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGG AGAGTGGATTTGATGATACAGCAGGTGagaaaatctttacaaatagaaat tATCGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcac TTTGAAGTTTATtgattatattatttttatctACTTAGATCAACATAAAA GAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATG GACATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAG TGGATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTAT CGTTATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTT GAAGTTTATTGATTATATTATTCTTATCTACTTAGATCAACATAAGAGAA GTTTTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGTTGAAATGGAC ATTCTCCATAAGGCTCCGGTCACTCAACAAGATGATGATTTGGAGAGTGG ATTTGATGATACAGCAGGTgagaaaatcttttacaaataGAAATTATCGT TATTTTTCTACGGTTCTCTTTTTccattgttatttttcattcacTTTGAA GTTTATtgattatattatttttatctACTTAGATCAACATAAAAGAAGTT TTCAAAGGAAGACAGCTCCTGAATATGACAGAAATGATGAAATGGACATT CTCCATAAAAAGGCTCCGGTCACTGAAAAAGATGATGATTTGGAGAGTGG ATTTGATGATACAGCAggtgagaaaaatttgaaaacaacaatTCTCCCGA GTAACAAACGTGTTGACTATAAATGGATAAACTTGAATTTcttgggtcat ttattaaatttggttcattggatcaaaagttatcctaatttgaaaaaaaa gttacttCAGGAAAGTactcaaaaacgttgaaaatcgacctatcaaattt ttattctgaaattttcagtagcgACAGCTTTTGCACGAATAAGAGCATTA CGTAGTAATTtagaaacataatttttttcaaacttgagcctagaaagggt ttaaaatcttcatcaaaatcatttccaTTTGTAAAAGGATTAAACTTTTT AGATCTCTTTTTAGAATATTCACctgaaagagagaaacttttttgtggcg caccagGTATATAATATCACTATATTGAAAAcgatttcattttctttcag cTTCTATTGCACGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAG TCGACTGACTCGGTCACAACCAGTAAGCTTTTTTTTCATCCTATCAGATT CATGTCCCGTTTCAAgctatttttcttttcgcatctTGAACTTTCAAAAT GTTGTCAATTATGAATACTAACTATCAGAATTTTCCTTTGAATGTAACAA AATGAATCCTTATTATTGTTattcttgtttttattattattgtatTCAAA GATTCTATTGTATTACTTATCTTCGTTAGCCGAATTGAGAAACCAGCCCA TAGCAAACCCAAACCTCTGATAAGTTTTACATCTCTTTCAGGGGAACCAG GAATTCGAAAACGTGGCAAAGAAAATACGAAGGCGAAAAAAACATCAGCC TCAAGTATGGTTATTTTCCCGTTATAAATGTCCAGGGCCTAAAGTTACTC TTGAAATTGCCTTTTTGATTAACATAATTTTATATCTTAAACTACAGGTa catgaaattttattttcaaaactttttagatATAATCCCTATTTCTTTTC CAATTGAGTTTGCCTCTCATTTTGTATGCCATTTTGAGTGGTACAATATC GAATCTTTTGTATATATGACAGTCAAATCTAGTATGGGAGTATTCCTCTG GCTCTGGGTCATTTATTATCACAATTGtaattctcttttattttagacAA CAATTCAATGAAACGCAAaagaaaagaggaaaagaaagagACTATTATGT GTACGGGATGTGGAGAAAAGTACGACGAAAAAACTGATGATAATAGGTAT GAAGAGTCGTTATGTTCGATTTTTTAGATCAAAAGCACTTCCTTTTTAAA GATTATACAAGGAAGACCTTTCTTGGAATTAAAGCATACCGTTTTCTTGT GAAAATTTAGAAAGAAGATATTATAGAGAATGACTGGTAGCAGTAGTTTA ACCTACTTTAAACACCATCAGTTTTTGCTTCTCAATCTCAATTACTctaa taatttaattttgaattttgcaaaaaattttcaCCCAATACATTTTTATT CCGAAcccctgcttgttaatttttggaaaattttatttgaaagttatTTT CCTTGCCCTAGTTATTCTGTATTAACCTGCTTTTCTAAAATTCTCTCTGT AATACCTACTCCTGCGAAAGGAGAGGGGATCCAGAGGCTTCATATATAAT ATCTATATCTAGTATCCACTGGTATTCGAAGATATTTCGAATGTCTGTTT TTCATGTTTGTTCGATGTCTTATCATATTTATTATAGGTGGGTGCAATGT GATGCATGCGAACAGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCG GACGTCAAAATATGACACTATTAATCTTGAAAATATACCGTTTAAGTGTA GAACGTCGTGTTTAAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTT TACTCAACGTAACTACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTT TGCGAATTGGGATAAATGTTTTACGAAGACAATAACAATGGAAATAGGTC TTGAATTCCCAAGtcaattgaatgaaaacaaaaacaaaatttgtcaAAGT CTTTCTTGAAGGGAAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCT AATCGCAATAAACAATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAA ATATTCATCCATAGTCCTTATAAAAACCCTGGTCCGgaagcttatttttc aaatattttgttagctttttcctttgttgccatcaaaagataaaaatcaa tttgctcAATTTTGGATCACGTTACCGagtactcctcttgggattggttt gagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058364-exon-scaffold_31-1491911889:62..175TCONS_00058364-exon-scaffold_31-1491911889:62..175Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:62..175TCONS_00058364-exon-scaffold_31-1510915933:62..175Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:62..175TCONS_00058364-exon-scaffold_31-1575043694:62..175Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:416..430TCONS_00058364-exon-scaffold_31-1491911889:416..430Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:416..430TCONS_00058364-exon-scaffold_31-1510915933:416..430Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:416..430TCONS_00058364-exon-scaffold_31-1575043694:416..430Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:677..731TCONS_00058364-exon-scaffold_31-1491911889:677..731Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:677..731TCONS_00058364-exon-scaffold_31-1510915933:677..731Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:677..731TCONS_00058364-exon-scaffold_31-1575043694:677..731Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:847..978TCONS_00058364-exon-scaffold_31-1491911889:847..978Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:847..978TCONS_00058364-exon-scaffold_31-1510915933:847..978Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:847..978TCONS_00058364-exon-scaffold_31-1575043694:847..978Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:1662..1733TCONS_00058364-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:1662..1733TCONS_00058364-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:1662..1733TCONS_00058364-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:2003..2065TCONS_00058364-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:2003..2065TCONS_00058364-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:2003..2065TCONS_00058364-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:2358..2457TCONS_00058364-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:2358..2457TCONS_00058364-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:2358..2457TCONS_00058364-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1491911889:2949..3520TCONS_00058364-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1510915933:2949..3520TCONS_00058364-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058364-exon-scaffold_31-1575043694:2949..3520TCONS_00058364-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:62..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (3.08776 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18773 0.604653 0.681029 0 0.847819 1.2766 0.833403 0.815713 2.29834 1.44848 1.55813 1.36554 0.719949 2.17466 1.35905 0.254305 0 2.3364 2.39562 2.24391 0.620747 3.08776 0.891783 0.162818 0 0.753782 0.237064 0.579548 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Sequence
Match NameE-valueIdentityDescription
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