TCONS_00058371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058371
Unique NameTCONS_00058371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058371 ID=TCONS_00058371|Name=TCONS_00058371|organism=Clytia hemisphaerica|type=transcript|length=996bp
CTGCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACA
GCAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGA
CAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTCAAC
AAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGcTTCTATTGCA
CGCCCTATTAGGAAAGCCAAGATGAGAAATTCCAAAGAGTCGACTGACTC
GGTCACAACCAGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGA
AGGCGAAAAAAACATCAGCCTCAAacAACAATTCAATGAAACGCAAaaga
aaagaggaaaagaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTA
CGACGAAAAAACTGATGATAATAGGTGGGTGCAATGTGATGCATGCGAAC
AGTGGTGTCATCTCCAGTGTTCCGGCATAAAATATCGGACGTCAAAATAT
GACACTATTAATCTTGAAAATATACCGTTTAAGTGTAGAACGTCGTGTTT
AAAGTAAAGATTGAACAATAAAAAGTGTCTGTATTTTTACTCAACGTAAC
TACAGTAATCGTATTTTTATATGGTCGAGCTCTCTTTTGCGAATTGGGAT
AAATGTTTTACGAAGACAATAACAATGGAAATAGGTCTTGAATTCCCAAG
tcaattgaatgaaaacaaaaacaaaatttgtcaAAGTCTTTCTTGAAGGG
AAATCCGGACTTTTTTGCACGTCCTATGTAATAGGCTAATCGCAATAAAC
AATTTAACCCCCATGTTGAGGAAGTCACTTTTGGAAAATATTCATCCATA
GTCCTTATAAAAACCCTGGTCCGgaagcttatttttcaaatattttgtta
gctttttcctttgttgccatcaaaagataaaaatcaatttgctcAATTTT
GGATCACGTTACCGagtactcctcttgggattggtttgagcaaaac
Run BLAST on NCBI

transcript from alignment at scaffold_31:192..3520+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058371 ID=TCONS_00058371|Name=TCONS_00058371|organism=Clytia hemisphaerica|type=transcript|length=3329bp|location=Sequence derived from alignment at scaffold_31:192..3520+ (Clytia hemisphaerica)
CTGCGGTCACTCAACAAGATGATGATTTGGAGAGTGGATTTGATGATACA
GCAGGTGagaaaatctttacaaatagaaattATCGTTATTTTTCTACGGT
TCtctttttctattgttatttttcGAAGTTTATtgattatattattttta
tctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAA
TATGACAGAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCAC
TGAAAAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTGaga
aaatctttacaaatagaaattATCGTTATTTTTCTACGGTTCTCTTTTTc
cattgttatttttcattcacTTTGAAGTTTATtgattatattatttttat
ctACTTAGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAAT
ATGACAGAAATGATGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAA
CAAGATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaat
cttttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccat
tgttatttttcattcacTTTGAAGTTTATTGATTATATTATTCTTATCTA
CTTAGATCAACATAAGAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATG
ACAGAAATGTTGAAATGGACATTCTCCATAAGGCTCCGGTCACTCAACAA
GATGATGATTTGGAGAGTGGATTTGATGATACAGCAGGTgagaaaatctt
ttacaaataGAAATTATCGTTATTTTTCTACGGTTCTCTTTTTccattgt
tatttttcattcacTTTGAAGTTTATtgattatattatttttatctACTT
AGATCAACATAAAAGAAGTTTTCAAAGGAAGACAGCTCCTGAATATGACA
GAAATGATGAAATGGACATTCTCCATAAAAAGGCTCCGGTCACTGAAAAA
GATGATGATTTGGAGAGTGGATTTGATGATACAGCAggtgagaaaaattt
gaaaacaacaatTCTCCCGAGTAACAAACGTGTTGACTATAAATGGATAA
ACTTGAATTTcttgggtcatttattaaatttggttcattggatcaaaagt
tatcctaatttgaaaaaaaagttacttCAGGAAAGTactcaaaaacgttg
aaaatcgacctatcaaatttttattctgaaattttcagtagcgACAGCTT
TTGCACGAATAAGAGCATTACGTAGTAATTtagaaacataatttttttca
aacttgagcctagaaagggtttaaaatcttcatcaaaatcatttccaTTT
GTAAAAGGATTAAACTTTTTAGATCTCTTTTTAGAATATTCACctgaaag
agagaaacttttttgtggcgcaccagGTATATAATATCACTATATTGAAA
AcgatttcattttctttcagcTTCTATTGCACGCCCTATTAGGAAAGCCA
AGATGAGAAATTCCAAAGAGTCGACTGACTCGGTCACAACCAGTAAGCTT
TTTTTTCATCCTATCAGATTCATGTCCCGTTTCAAgctatttttcttttc
gcatctTGAACTTTCAAAATGTTGTCAATTATGAATACTAACTATCAGAA
TTTTCCTTTGAATGTAACAAAATGAATCCTTATTATTGTTattcttgttt
ttattattattgtatTCAAAGATTCTATTGTATTACTTATCTTCGTTAGC
CGAATTGAGAAACCAGCCCATAGCAAACCCAAACCTCTGATAAGTTTTAC
ATCTCTTTCAGGGGAACCAGGAATTCGAAAACGTGGCAAAGAAAATACGA
AGGCGAAAAAAACATCAGCCTCAAGTATGGTTATTTTCCCGTTATAAATG
TCCAGGGCCTAAAGTTACTCTTGAAATTGCCTTTTTGATTAACATAATTT
TATATCTTAAACTACAGGTacatgaaattttattttcaaaactttttaga
tATAATCCCTATTTCTTTTCCAATTGAGTTTGCCTCTCATTTTGTATGCC
ATTTTGAGTGGTACAATATCGAATCTTTTGTATATATGACAGTCAAATCT
AGTATGGGAGTATTCCTCTGGCTCTGGGTCATTTATTATCACAATTGtaa
ttctcttttattttagacAACAATTCAATGAAACGCAAaagaaaagagga
aaagaaagagACTATTATGTGTACGGGATGTGGAGAAAAGTACGACGAAA
AAACTGATGATAATAGGTATGAAGAGTCGTTATGTTCGATTTTTTAGATC
AAAAGCACTTCCTTTTTAAAGATTATACAAGGAAGACCTTTCTTGGAATT
AAAGCATACCGTTTTCTTGTGAAAATTTAGAAAGAAGATATTATAGAGAA
TGACTGGTAGCAGTAGTTTAACCTACTTTAAACACCATCAGTTTTTGCTT
CTCAATCTCAATTACTctaataatttaattttgaattttgcaaaaaattt
tcaCCCAATACATTTTTATTCCGAAcccctgcttgttaatttttggaaaa
ttttatttgaaagttatTTTCCTTGCCCTAGTTATTCTGTATTAACCTGC
TTTTCTAAAATTCTCTCTGTAATACCTACTCCTGCGAAAGGAGAGGGGAT
CCAGAGGCTTCATATATAATATCTATATCTAGTATCCACTGGTATTCGAA
GATATTTCGAATGTCTGTTTTTCATGTTTGTTCGATGTCTTATCATATTT
ATTATAGGTGGGTGCAATGTGATGCATGCGAACAGTGGTGTCATCTCCAG
TGTTCCGGCATAAAATATCGGACGTCAAAATATGACACTATTAATCTTGA
AAATATACCGTTTAAGTGTAGAACGTCGTGTTTAAAGTAAAGATTGAACA
ATAAAAAGTGTCTGTATTTTTACTCAACGTAACTACAGTAATCGTATTTT
TATATGGTCGAGCTCTCTTTTGCGAATTGGGATAAATGTTTTACGAAGAC
AATAACAATGGAAATAGGTCTTGAATTCCCAAGtcaattgaatgaaaaca
aaaacaaaatttgtcaAAGTCTTTCTTGAAGGGAAATCCGGACTTTTTTG
CACGTCCTATGTAATAGGCTAATCGCAATAAACAATTTAACCCCCATGTT
GAGGAAGTCACTTTTGGAAAATATTCATCCATAGTCCTTATAAAAACCCT
GGTCCGgaagcttatttttcaaatattttgttagctttttcctttgttgc
catcaaaagataaaaatcaatttgctcAATTTTGGATCACGTTACCGagt
actcctcttgggattggtttgagcaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036772XLOC_036772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058371-exon-scaffold_31-1491911889:192..245TCONS_00058371-exon-scaffold_31-1491911889:192..245Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:192..245TCONS_00058371-exon-scaffold_31-1510915933:192..245Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:192..245TCONS_00058371-exon-scaffold_31-1575043694:192..245Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1491911889:351..430TCONS_00058371-exon-scaffold_31-1491911889:351..430Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:351..430TCONS_00058371-exon-scaffold_31-1510915933:351..430Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:351..430TCONS_00058371-exon-scaffold_31-1575043694:351..430Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1491911889:677..731TCONS_00058371-exon-scaffold_31-1491911889:677..731Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:677..731TCONS_00058371-exon-scaffold_31-1510915933:677..731Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:677..731TCONS_00058371-exon-scaffold_31-1575043694:677..731Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1491911889:1662..1733TCONS_00058371-exon-scaffold_31-1491911889:1662..1733Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:1662..1733TCONS_00058371-exon-scaffold_31-1510915933:1662..1733Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:1662..1733TCONS_00058371-exon-scaffold_31-1575043694:1662..1733Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1491911889:2003..2065TCONS_00058371-exon-scaffold_31-1491911889:2003..2065Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:2003..2065TCONS_00058371-exon-scaffold_31-1510915933:2003..2065Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:2003..2065TCONS_00058371-exon-scaffold_31-1575043694:2003..2065Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1491911889:2358..2457TCONS_00058371-exon-scaffold_31-1491911889:2358..2457Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:2358..2457TCONS_00058371-exon-scaffold_31-1510915933:2358..2457Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:2358..2457TCONS_00058371-exon-scaffold_31-1575043694:2358..2457Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1491911889:2949..3520TCONS_00058371-exon-scaffold_31-1491911889:2949..3520Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1510915933:2949..3520TCONS_00058371-exon-scaffold_31-1510915933:2949..3520Clytia hemisphaericaexon
TCONS_00058371-exon-scaffold_31-1575043694:2949..3520TCONS_00058371-exon-scaffold_31-1575043694:2949..3520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:192..3520 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0175465	0.0115359	0	0	0	0	0	0	0.00473326	0.0023573	0.056609	0.0281915	0.00881271	0.00614339	0.0196093	0.0188665	0.0559924	0.449573	0.0159302	0.00559042	0.0205511	0.0178009	0.00774598	0.0124531	0	0	2.02717	0.0074475	0.0157762	0.0198759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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