TCONS_00058421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058421
Unique NameTCONS_00058421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058421 ID=TCONS_00058421|Name=TCONS_00058421|organism=Clytia hemisphaerica|type=transcript|length=704bp
ttatagtgtttaaaaaaattgagaaaaaagaaagtcaattaaaaaaggaa
aattatggGGTCAACAGAAAGTAACTGTCAACATTACCAACGCAAGTGTT
TCATGGTATCACCTTGTTGTAACAAAGAGTATGGATGTCGTATCTGTCAT
GATGAGAATGAAGGACACACATTAAACCGTAGAGAAGTGGAACAAATTGT
TTGTTTACAATGTAAAACTAAACAAAAGgtgCAAAGGAATTGTGAAGAAT
GTGGCATTTTGTTCGGGAGGTACACTTGTCTGACTTGTCGTTTGTTCGAT
GATGTTGACAAAAAACAGTTTCACTGTGAAGGTTGCGGTATTTGTAGAGT
TGGAGGATCAGAAAACTTTTACCATTGCGACATTTGCAATATGTGTATCG
GAATCGGCATTAAAGACTCTCACAAGTGTTTAGCGGATTCTTCCAAACAG
AATTGTCCTGTCTGTCTAGAGTACTTACACACATCACGAAAGGTTTTGCA
CATCCCGCAATGTTCTCACGTATTGCATTACGAATGTTATCGAAGCATGC
TACAGCAcgggtaattttttttgccaatttcatTGTCATTCAAACATTAG
TATTTCTGAAGATACCTTTTTTTAATGGTTGATTGCATCTTTTCCGCTCA
AATACACAATTGAGTATATCAgaaataagtaatagttatcggacagttgc
gagt
Run BLAST on NCBI

protein sequence of TCONS_00058421-protein

>TCONS_00058421-protein ID=TCONS_00058421-protein|Name=TCONS_00058421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MGSTESNCQHYQRKCFMVSPCCNKEYGCRICHDENEGHTLNRREVEQIVC
LQCKTKQKVQRNCEECGILFGRYTCLTCRLFDDVDKKQFHCEGCGICRVG
GSENFYHCDICNMCIGIGIKDSHKCLADSSKQNCPVCLEYLHTSRKVLHI
PQCSHVLHYECYRSMLQHG
Run BLAST on NCBI

transcript from alignment at scaffold_311:49781..52854+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058421 ID=TCONS_00058421|Name=TCONS_00058421|organism=Clytia hemisphaerica|type=transcript|length=3074bp|location=Sequence derived from alignment at scaffold_311:49781..52854+ (Clytia hemisphaerica)
ttatagtgtttaaaaaaattgagaaaaaagaaagtcaattaaaaaaggaa
aattatggGGTCAACAGAAAGTAACTGTCAACATTACCAACGCAAGTGTT
TCATGGTATCACCTTGTTGTAACAAAGAGTATGGATGTCGTATCTGTCAT
GATGAGAATGAAGGACACACATTAAACCGTAGAGAAGTGGAACAAATTGT
TTGTTTACAATGTAAAACTAAACAAAAGGTTTGGAATTTTTAGATCTGAA
TCATATACCCTTTAAATATTTTCCCATTAGTGATGTAACTTAAATCCCAT
ttgacttttccagaaaaaatttgaatatgggggtggaggatatataaaat
ttaccccccccccggacattgtgacttttgagtCCCCGgaacagcaggtc
taaccccccggacaaaCATTAGTTGAACCCCTGGAcactcaaaattaccc
tcaaacagagcaaattacccccaaacagagcaagtttaccccccggacaa
gtcAAATTttggacactatatcctccacccccatataCGAACATTTTTTG
TAAGAGCCCTTTTTTCCTACCATGTGGAAACCATATCAGCATAATTAGAC
TGATTCTCTTGAAAATGGTTTGCATCTGGTAGCAAAAGTGAGTCTACAAT
TAAAGCAAATGGATTTTAATATTCAATTCGGATTAAAAACTTATTAATAC
TGCGATTATTTATTGGTAAGCTCTATCCCGTAAGGTAAGCCGTTTATATG
ATTTCCACTAGATGCATTAACAGCTTTTTTTAGATGGATCATTTTTAAAA
CAAGATGAGTATAGAGAGTTTTCATATTTTGTTAGGTTACGTAATTTCTG
CCATTATTGAAgccaaacgttcgaatctgtagagatGAACCCTTACACTA
ATCgaatgtttgcttccataattGCGAAAGTTACGTAACATAACAAAATC
CAAATAAAGCAAGTGGTTTGGAAAAATAACTTCaccctccttttttcttt
ttttatttcaggtgCAAAGGAATTGTGAAGAATGTGGCATTTTGTTCGGG
AGGTACACTTGTCTGACTTGTCGTTTGTTCGATGATGTTGACAAAAAACA
GTTTCACTGTGAAGGTTGCGGTATTTGTAGGTAGGTCTCTCATCGCTTTT
AACTACCTAAGGGTTTAGGTAGGAATAATTCTTAATAAaaactttaggcg
tacaaactttcgctggcagaaactttcgcctTTTCCGcgaatttttgcct
ttttcgcaaaagtaaatgtctttgaaaattcttaagaGCTACTCGCAAAA
GTTCATGATCGCGAAAAATCCTTCACAAATAAGAaattgtaaaacttcaa
actttgaataaaatgtaacattTATGCCTGTTAAAGCCTAAGGACAAAAG
TTTCAAGccaattcaagaagtatttgtctctaagctattttttcatgtga
aaattttcatttttacgtTTTGGTTCGCGAagattttttcgtcaaattcg
ggaaagtaaatttcgcgattttcggacctcgcgaaagtttctgcttgtga
aagtttgtacgcctaaaaagTAATATAAGTAATACAGTATAATAGGTTAT
AATTTCAAGCAAGATGTTTTGAGATTTCTTTAAACAACCATTTCTGGTTC
ACACTGGTTCAGTAATTTTATAAATGAGAAATTGTCATTCGTTCTTTAAT
TATTCTTACAGAGTTGGAGGATCAGAAAACTTTTACCATTGCGACATTTG
CAATATGTGTATCGGAATCGGCATTAAAGACTCTCACAAGGTATGGAGCA
GTATGGAGCCCTTTTTTCCGTCAAAGTCCTTTTCCCGACACCGCTTTTAC
TACTACGCACTTGATTGTCCTTCATATAATTCCAATACGCTTCTTTAGAG
ATTGGAATAACAGGATCAttagaatcactgattgaaaaagatttttcctc
tgtGACCGCTATAAGCAACGAATaagtttcaatcagtgattttgACCTTT
CTATTATTCCAAACTCTAAAGAAGGGTTAAGGAATGTCGTTGTAAGAACA
ACTTACGCtaagacttttagacagtctatCGATTGTTTTTCACGGCATCC
AAAGCCAGCTTGCTCGGCTACCTGTTAACAGAAGGGGACACAGGAAGGTG
CGGGAATTCGAACTATGAACCCCTGGTTTTTACCGATGACGCCTTGACCt
cttggccatcgctccttgTATGGTCATTACAGAAATATGCCACGCTCATG
AATGTGTACAACCAGTAGGGACCTAGGAGCACTAGTAGATTCTTGTATAG
CTTTTTAAGTATAAAGTTCCTGTTTAAAACGGATTTTCATCTCGGCGAGG
TACAAAAAGAGACTTGTTTATCTAAAAAATCTTTGCTAATTTGTCCATTT
CGACAAAAAAACTTTGCTTGGAACACTGAACATTTGTATTAATAACTTTC
TTCGATTTTCAGTGTTTAGCGGATTCTTCCAAACAGAATTGTCCTGTCTG
TCTAGAGGTAAACATTCACTTTTCATCACCCTTTCCCACAAAAGACCTTG
TTTCCCTTttctaatttgaaaaaagaGATTAATGAAATAGCTCATGTCCT
TTTTAAGGTGAAACTCCAACAAAGAAAATTCTCGTAACGTTATTCCTGAA
gaattttagtttattttatgcttcaaaattcttgaaattaacGCGAAGAT
AGTCTTAATAGGTGACATTTCCATTAACCCTTGATAGGCCAGTTTTCGGA
CCAGGTTGGTTGGCAAACTCTgaatccagaaaaaaatgtacaTGTCCCTT
ACACAGTTTAATAAATAACCTTTTCAACATTTCTCATGCAGTACTTACAC
ACATCACGAAAGGTTTTGCACATCCCGCAATGTTCTCACGTATTGCATTA
CGAATGTTATCGAAGCATGCTACAGCAcgggtaattttttttgccaattt
catTGTCATTCAAACATTAGTATTTCTGAAGATACCTTTTTTTAATGGTT
GATTGCATCTTTTCCGCTCAAATACACAATTGAGTATATCAgaaataagt
aatagttatcggacagttgcgagt

Coding sequence (CDS) from alignment at scaffold_311:49781..52854+

>TCONS_00058421 ID=TCONS_00058421|Name=TCONS_00058421|organism=Clytia hemisphaerica|type=CDS|length=2550bp|location=Sequence derived from alignment at scaffold_311:49781..52854+ (Clytia hemisphaerica)
atggGGTCAACAGAAAGTAACTGTCAACATTACCAACGCAAGTGTTTCAT
GGTATCACCTTGTTGTAACAAAGAGTATGGATGTCGTATCTGTCATGATG
AGAATGAAGGACACACATTAAACCGTAGAGAAGTGGAACAAATTGTTTGT
TTACAATGTAAAACTAAACAAAAGgtgCAAAGGAATTGTGAAGAATGTGG
CATTTTGTTCGGGAGGTACACTTGTCTGACTTGTCGTTTGTTCGATGATG
TTGACAAAAAACAGTTTCACTGTGAAGGTTGCGGTATTTGTAGAGTTGGA
GGATCAGAAAACTTTTACCATTGCGACATTTGCAATATGTGTATCGGAAT
CGGCATTAAAGACTCTCACAAGTGTTTAGCGGATTCTTCCAAACAGAATT
GTCCTGTCTGTCTAGAGTACTTACACACATCACGAAAGGTTTTGCACATC
CCGCAATGTTCTCACGTATTGCATTACGAATGTTATCGAAGCATGCTACA
GCAcgggtaaatggGGTCAACAGAAAGTAACTGTCAACATTACCAACGCA
AGTGTTTCATGGTATCACCTTGTTGTAACAAAGAGTATGGATGTCGTATC
TGTCATGATGAGAATGAAGGACACACATTAAACCGTAGAGAAGTGGAACA
AATTGTTTGTTTACAATGTAAAACTAAACAAAAGgtgCAAAGGAATTGTG
AAGAATGTGGCATTTTGTTCGGGAGGTACACTTGTCTGACTTGTCGTTTG
TTCGATGATGTTGACAAAAAACAGTTTCACTGTGAAGGTTGCGGTATTTG
TAGAGTTGGAGGATCAGAAAACTTTTACCATTGCGACATTTGCAATATGT
GTATCGGAATCGGCATTAAAGACTCTCACAAGTGTTTAGCGGATTCTTCC
AAACAGAATTGTCCTGTCTGTCTAGAGTACTTACACACATCACGAAAGGT
TTTGCACATCCCGCAATGTTCTCACGTATTGCATTACGAATGTTATCGAA
GCATGCTACAGCAcgggtaaatggGGTCAACAGAAAGTAACTGTCAACAT
TACCAACGCAAGTGTTTCATGGTATCACCTTGTTGTAACAAAGAGTATGG
ATGTCGTATCTGTCATGATGAGAATGAAGGACACACATTAAACCGTAGAG
AAGTGGAACAAATTGTTTGTTTACAATGTAAAACTAAACAAAAGgtgCAA
AGGAATTGTGAAGAATGTGGCATTTTGTTCGGGAGGTACACTTGTCTGAC
TTGTCGTTTGTTCGATGATGTTGACAAAAAACAGTTTCACTGTGAAGGTT
GCGGTATTTGTAGAGTTGGAGGATCAGAAAACTTTTACCATTGCGACATT
TGCAATATGTGTATCGGAATCGGCATTAAAGACTCTCACAAGTGTTTAGC
GGATTCTTCCAAACAGAATTGTCCTGTCTGTCTAGAGTACTTACACACAT
CACGAAAGGTTTTGCACATCCCGCAATGTTCTCACGTATTGCATTACGAA
TGTTATCGAAGCATGCTACAGCAcgggtaaatggGGTCAACAGAAAGTAA
CTGTCAACATTACCAACGCAAGTGTTTCATGGTATCACCTTGTTGTAACA
AAGAGTATGGATGTCGTATCTGTCATGATGAGAATGAAGGACACACATTA
AACCGTAGAGAAGTGGAACAAATTGTTTGTTTACAATGTAAAACTAAACA
AAAGgtgCAAAGGAATTGTGAAGAATGTGGCATTTTGTTCGGGAGGTACA
CTTGTCTGACTTGTCGTTTGTTCGATGATGTTGACAAAAAACAGTTTCAC
TGTGAAGGTTGCGGTATTTGTAGAGTTGGAGGATCAGAAAACTTTTACCA
TTGCGACATTTGCAATATGTGTATCGGAATCGGCATTAAAGACTCTCACA
AGTGTTTAGCGGATTCTTCCAAACAGAATTGTCCTGTCTGTCTAGAGTAC
TTACACACATCACGAAAGGTTTTGCACATCCCGCAATGTTCTCACGTATT
GCATTACGAATGTTATCGAAGCATGCTACAGCAcgggtaaatggGGTCAA
CAGAAAGTAACTGTCAACATTACCAACGCAAGTGTTTCATGGTATCACCT
TGTTGTAACAAAGAGTATGGATGTCGTATCTGTCATGATGAGAATGAAGG
ACACACATTAAACCGTAGAGAAGTGGAACAAATTGTTTGTTTACAATGTA
AAACTAAACAAAAGgtgCAAAGGAATTGTGAAGAATGTGGCATTTTGTTC
GGGAGGTACACTTGTCTGACTTGTCGTTTGTTCGATGATGTTGACAAAAA
ACAGTTTCACTGTGAAGGTTGCGGTATTTGTAGAGTTGGAGGATCAGAAA
ACTTTTACCATTGCGACATTTGCAATATGTGTATCGGAATCGGCATTAAA
GACTCTCACAAGTGTTTAGCGGATTCTTCCAAACAGAATTGTCCTGTCTG
TCTAGAGTACTTACACACATCACGAAAGGTTTTGCACATCCCGCAATGTT
CTCACGTATTGCATTACGAATGTTATCGAAGCATGCTACAGCAcgggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036809XLOC_036809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058421-exon-scaffold_311-1491911889:49781..50008TCONS_00058421-exon-scaffold_311-1491911889:49781..50008Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1510915933:49781..50008TCONS_00058421-exon-scaffold_311-1510915933:49781..50008Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1575043694:49781..50008TCONS_00058421-exon-scaffold_311-1575043694:49781..50008Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1491911889:50792..50910TCONS_00058421-exon-scaffold_311-1491911889:50792..50910Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1510915933:50792..50910TCONS_00058421-exon-scaffold_311-1510915933:50792..50910Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1575043694:50792..50910TCONS_00058421-exon-scaffold_311-1575043694:50792..50910Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1491911889:51492..51570TCONS_00058421-exon-scaffold_311-1491911889:51492..51570Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1510915933:51492..51570TCONS_00058421-exon-scaffold_311-1510915933:51492..51570Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1575043694:51492..51570TCONS_00058421-exon-scaffold_311-1575043694:51492..51570Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1491911889:52243..52287TCONS_00058421-exon-scaffold_311-1491911889:52243..52287Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1510915933:52243..52287TCONS_00058421-exon-scaffold_311-1510915933:52243..52287Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1575043694:52243..52287TCONS_00058421-exon-scaffold_311-1575043694:52243..52287Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1491911889:52622..52854TCONS_00058421-exon-scaffold_311-1491911889:52622..52854Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1510915933:52622..52854TCONS_00058421-exon-scaffold_311-1510915933:52622..52854Clytia hemisphaericaexon
TCONS_00058421-exon-scaffold_311-1575043694:52622..52854TCONS_00058421-exon-scaffold_311-1575043694:52622..52854Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058421-proteinTCONS_00058421-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:49781..52854 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.6757	28.8653	24.9133	23.4211	15.5613	14.0534	13.0847	14.4927	11.0526	11.9698	11.9812	8.54426	8.58005	9.80151	9.68609	10.0016	11.5679	13.2905	6.01894	7.17538	6.23671	6.3883	15.4495	15.9883	12.8509	12.7053	5.89661	4.71977	10.262	11.9143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008913Znf_CHY
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017921Znf_CTCHY
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00058421 vs. Swiss-Prot (Human)
Match: ZN363 (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 8.684e-57
Identity = 84/165 (50.91%), Postives = 115/165 (69.70%), Query Frame = 1 
Query:   67 ESNCQHYQRKCFMVSPCCNKEYGCRICHDENEGHTLNRREVEQIVCLQCKTKQKVQRNCEECGILFGRYTCLTCRLFDDVDKKQFHCEGCGICRVGGSENFYHCDICNMCIGIGIKDSHKCLADSSKQNCPVCLEYLHTSRKVLHIPQCSHVLHYECYRSMLQHG 561
            +  C+HY R C + +PCC+K Y CR+CHD NE H L+R +V+++ C+ C+  Q  Q+ CEEC  LFG Y C  C LFD  DKKQ+HCE CGICR+G  E+F+HC  CN+C+ + ++  HKC+ + S+QNCP+CLE +HTSR V H+  C H+LH  CY  ML+ G
Sbjct:   17 QRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDK-DKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG 180
The following BLAST results are available for this feature:
BLAST of TCONS_00058421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3638.684e-5750.91RING finger and CHY zinc finger domain-containing ... [more]
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