TCONS_00058484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058484
Unique NameTCONS_00058484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058484 ID=TCONS_00058484|Name=TCONS_00058484|organism=Clytia hemisphaerica|type=transcript|length=1349bp
catgttttGTTCAATTTGTCTTCTATTTTACATCTCTGGTTTTTTGTCTT
CTGTATAACATATGTACAAAGGAAAAAATTATTCGCATTAGATAAACCTT
GTAATATTAAttaataattatattttatataactttaaacttgacatttt
ttttaatcttttgtacattttggaaaaaataaaattatccaACAAACTAA
tctacagaaaaaaagaaattttggcatcAACTTCTTAAAAGCAAGACAAA
ATGCGAAATAAAGTCGGAAAATAGCATTGGGATCCAACTTGATGCAGAAA
GTCGTAACATCTAACGTTCATGAAGCGTAAAAACTGCACCCTGTGCATCG
GGAATAAAGTCTTGAcaacaaatattatttttaaaacttagAAGTTGGAC
TTAAGGGGGTGTAATTTAATCGATTTAATCCACAATTTTATCCCCTTAAG
ATTAATCGCTTTTTAAGACAGCCCCGACATAACATTGCAAAATATGCATT
TGTTTTGAATATCAATATGCAATAATATTAATTAAGGCAGGTTTTTAGCA
ACAGAATTTCGAATTTGTCAAATCATTTTGtcaaataatagaaaaattag
GATTAGGCAAAATGCCTGTGCTGAACTTATTCAATCGTAACCAGTCATGT
TTTACGTGTTTTTCTCAGGGGATAGTCCTTTCCCTGTAAACAGCTAGCTT
GGTATCTGAATCGTTTTGGAAGCAGCTTTTTAGGATGTGTCGGTTATCCA
TTAGTGTTCTCGACGCCCATCAGTAGTAAAGGTTTTACATCGTAGACATT
GCGTTTGTTAATATCCTCACGATATCTTTGTATCGTACTACTAACTAGGT
AAGCTGCGATACACCACACCAGTGACAGTAGCATTTGGCATCATTTTACC
ACCATAAAATAACTCTTTTTTACTTATAGAGAAATCAAACCACAACGCCG
CCATCCTTTCATCTCCGACCGTTACAATCGATTTGTTGGCAATCACAACT
TTCTAGCTTCGTTTCAAGTTCAACAACCATTATAACACTATTACCACCTT
GAACACAAGCTACAGTCTCGTTTTTGAGTGACCAAGTCGGTTGACATCTT
CTACAGACTTGGATAGCACCATCCATGGttggaaaataaaatgaattacA
AAGTCCACTGCATCCTTTGGTAGGGACATCCACGCGTGCGCAGTTGGTAC
CAGGAATTGATCGAGTTACTGTTGTGGTTACTTCCCAGCAACGTTCTCCA
GCGCTGGAGTCACCGagTAACCGACTGTTCTAGATTGCCGCCgaagataa
aaacaaaacatcaaaacaaggaCCGTCCAAGAGAGACTTGAAAGGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_311:1065404..1072572+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058484 ID=TCONS_00058484|Name=TCONS_00058484|organism=Clytia hemisphaerica|type=transcript|length=7169bp|location=Sequence derived from alignment at scaffold_311:1065404..1072572+ (Clytia hemisphaerica)
catgttttGTTCAATTTGTCTTCTATTTTACATCTCTGGTTTTTTGTCTT
CTGTATAACATATGTACAAAGGAAAAAATTATTCGCATTAGATAAACCTT
GTAATATTAAttaataattatattttatataactttaaacttgacatttt
ttttaatcttttgtacattttggaaaaaataaaattatccaACAAACTAA
tctacagaaaaaaagaaattttggcatcAACTTCTTAAAAGCAAGACAAA
ATGCGAAATAAAGTCGGAAAATAGCATTGGGATCCAACTTGATGCAGAAA
GTCGTAACATCTAACGTTCATGAAGCGTAAAAACTGCACCCTGTGCATCG
GGAATAAAGTCTTGAcaacaaatattatttttaaaacttagAAGTTGGAC
TTAAGGGGGTGTAATTTAATCGATTTAATCCACAATTTTATCCCCTTAAG
ATTAATCGCTTTTTAAGACAGCCCCGACATAACATTGCAAAATATGCATT
TGTTTTGAATATCAATATGCAATAATATTAATTAAGGCAGGTTTTTAGCA
ACAGAATTTCGAATTTGTCAAATCATTTTGtcaaataatagaaaaattag
GATTAGGCAAAATGCCTGTGCTGAACTTATTCAATCGTAACCAGTCATGT
TTTACGTGTTTTTCTCAGGGGATAGTCCTTTCCCTGTAAACAGCTAGCTT
GGTATCTGAATCGTTTTGGAAGCAGCTTTTTAGGATGTGTCGGTTATCCA
TTAGTGTTCTCGACGCCCATCAGTAGTAAAGGTTTTACATCGTAGACATT
GCGTTTGTTAATATCCTCACGATATCTTTGTATCGTACTACTAACTAGGT
AAGCTGCGATACACCACACCAGTGACAGTAGCATTTGGCATCATTTTACC
ACCATAAAATAACTCTTTTTTACTTATAGAGAAATCAAACCACAACGCCG
CCATCCTTTCATCTCCGACCGTTACAATCGATTTGTTGGCAATCACAACT
TTCTAGCTTCGTTTCAAGTTCAACAACCATTATAACACTATTACCACCTT
GAACACAAGCTACAGTCTCGTTTTTGAGTGACCAAGTCGGTTGACATCTT
CTACAGACTTGGATAGCACCATCCATGGttggaaaataaaatgaattacA
AAGTCCACTGCATCCTTTGGTAGGGACATCCACGCGTGCGCAGTTGGTAC
CAGGAATTGATCGAGTTACTGTTGTGGTTACTTCCCAGCAACGTTCTCCA
GCGCTGGAGTCACCGGTAGGTACTGGTATACAGACAATGACTGTACAAAA
CAAAGCCAAAATGGTGATAGTTGTGTTCAATAGCGTTTGCATCTTCATGA
TTTTTTACTATTGTTGTTATCGTTGTTGCGTCTAtcgttgaatgttttca
aatgtaTATTGTCAGCCTGAAATGAAAGATAAAATCAATATATAGGGACG
ATAATCATATAGCTGCAGATGAGTTTTATAATTTGATAATATGCTAGACA
ATACAATAGCTTTTACAGAGATATCAGAATTTTCACGTAAAGAGCATATT
ACATTGGATCTATGACTACACAGACTTTACCGCCCTGTACAAATGGTAAA
ACGATCACAGCGCTATACTGTATATCTCAGCTCAATTAATTAGCCTAATT
GATATAGATTACTTTTAATGGCACATTAAACCGGACAATCCTAAAGTGGT
TCTCTATAAGCCGATGTAAAGACTGACTGCCTCTAAAAATTGATCTACTT
TGACTCTGACGGTGGGCCAAGTCATCAAAACCAACTATTAAATTCTTGAC
CTTTTGTTCCTTTTTACGACCTCTCTAATTAGCTATCtaaaagaacaata
aaaaacTAATTATTGTCTGGAAAATAACAGagaaaatgactgaaataaAC
AACTTAGTGTCAAACTAATTGCTACACCTCACAAAAAGATGCATTTATAC
GACGCGCACTAACCTTTCTCTTTTGAAGAAATAACTTTTACAAGAGAAGA
TCAAAcaagaaatatcaaatttgtaaTAAACTTCTGTAACAATTGATCAA
AGCAAAAAAAGCGACATTATAGAGTTGCACTTATCGCGTAGCTCCTCTCT
AATTTACAATGTGTCCGTATTTGAAATTCACTGTTCTAAAGCTTCTAAAA
CGAAAGCGCGGCCGCTATACCAATATATTACTCCACAGCGGGTATTGATA
GGCTTAGACAGCTCAAACACATTCGAAATGTCGGCATTGGCTTCCTCAAA
GTCTTACTAGAATCGCAGATTAAGATCGCTCCTAATATCTATGATTGAAC
TTTCATTTTCCAAAGGTAAAGTTAATTTGTAGCGGTAGCATCGAACTTAG
AAATTGTCTGCAAGATCCATTGATTATATTTATATATGTATGCATGGTTT
TTAAGagtttaaaaacaaaggaacaaaGGGTAGATTGAATAACTTTTAAC
AATGTTTcttattgtatttttcaaaaaaaaaataaagaaaaaaactcgAT
AAAGATATAGTGGTGGATATAGATGACAAGGACGACATCGGAAATCAGAA
AAACACTgctcttcaaaaaataaaaaagaagaaaagataaaaaatgagac
aaaagTAATTATCTGAAATTTCCTTCAGCCAGTTTTAAGGAACGGCTATT
GCAGATCATGACGGAAGACAAAAAGTTTCGGCTTTTTTGATGTCCTGCTG
TTCAATCATTTAAGAAGTTGTAATGTTCCGTAATTACCCTCCATTTGATC
TGATTACGTGCCAAATAATAACGAAAAGACACACATAAATGTATCTAAAT
CAAGCTCATCTCATACTGtaacttttataattttttgagtattttgaaTA
TAGCATCAATGCAATGTCTTGCAACCATATTACATCATTGAGACAGCata
tctgaaagaaaaaaaactaaacaaaactACAGCCGCAAAGCGGCTTAACC
ACTACCTTAGTATAGGAAAAACGATGTAGCAACAGCCACCACCTTCGCCA
AACTTGAACTAAACTTGAACTACAAACATACTAGGGGATAAGCCAGCCTC
attaaaatctttgaaagtTTTGATTGATCGATGGTCAATATTGGACAGAA
GAGAGTTAATAATGTTTCTAATAGCTCTTAAAGATATGTTATAACAACTT
TTAAACCACTTTCTAATTTCATATTCGCTTTACAAGTATATGATGCCGAA
AAATTACGGATTTTACTTCCAACAAAAGCCAGTATTTTGATTAGATCTTT
TTAAAGTGCAATACTGGAAAAAGTTCTCAGGCATTTCAGAAAGTTTAACA
ACAAAACTGTAGAACTTATTACGTCAATCAACGGGAAAAGCTGACCAAAA
AAccctaaaacaaacaaaataattgacagctactaaacaaaagaattata
aTCCGTTTATACATGGAGTCATTATCTTTTAGATGATCCAATCTATCAAA
GTCCGCTGTAGCTCGACAAATGAAAACCATTTGAAATTAGTACCACCTTT
TATTGACAAGCGAGCAGATActgtaaaaataccaaaaattgtGAACCCAG
ATAATACAAGTCAAAAGAAAACAATCAAGAAACATACCACTAAGTGACAT
ATCAACCCTAAGGCCCACGCAACTTAAAAGCCAACCCATGATATGTGACA
AGGAAGAGCCGACAAGTGGTGGATAAGAGGGTAATCACGTATGCACTTCA
AGTAAGTTGCAATCAAATCATCGCTATAAGGCTAAGAAGTCGGGTCAGAA
AATGAAGCCCTCGGACCTATCAGTCTTTTCCTTAGCCCGAGGTCCactta
aatctttttttatagactggatggcgcgattcaCTGGAATCAGCGTCAta
ataaattatcaaaaagcaaagttcagccaaaagtagactctataGTCTAT
CTGTTCCtgtaaagaatcctgcattgtaacacgcatgcgtaatttgtcgt
tctttaaccATAAGTGGTTTAATCTTCGTAATATACAGAGATGAATCGAA
ACACTGGGGTGGACAAATTAACCGCGTCGGGGCTGTGGACGGCGGATTTG
TCGTTCTTTTGTCTATCTTTAGTAaatgtaggattctttagattaGCCCC
GTCCCATATCCTTACTAAAACCAACGAAATGTTACCCGATTAAATCGATT
CATTCAGCGCATCTATCCTTACATGCTAAGCAATAATGTCCACATAATAT
TTTTAACATCAATAATGGTAGCACACTAAGACTTATTTCTATTTGCACGC
CACACATTTATGATAAtacaaattcatgatattcatgacgtaatgttttc
tactaaaataccccggttttagccagtagtggcaaattgaagtaaattgt
ataaaatttgccactactggcaaaaaccatAGGATATAGGATTCACGGTT
TGAATCCCCGGTCCTTCTCATATTCTGCTCAGTTCTCAGATAGCCGAGCC
TGCTGGCAGTGGACCCCGTTGCCGGGAAAACGAAAGACTCTTCTAGATTA
TTTTATCCACATAAAATATCGACCCTATCTCTATCTGTTTTCCGTGCCAA
TCCAAGGACCCTTAACAGATAATGCAATGTAACCAAAGTCAACGTAGCTG
ATAAAAGCCACACCGATACTAACTTTAAATCTTAGAAGATCGCCATCTAT
TAAAAAACTTTCAGTGAAAAATAAACGCAAtcagtatttcaaaagttttc
aaagcCTTTCAAACCATTCAAGAACATAAAGTGACAAATATAGAATCGAA
ACGTAAATATACTTTATCGCAAGTTTGCGTGTCGTTGAAACGTAGCGCAT
TTACAAGTTATACTGTACTATTTTtaccaaaacttttttcttgaaaaaat
aacNGGGGTGGACAAATTAACCGCGTCGGGGCTGTGGACGGCGGATTTGT
CGTTCTTTTGTCTATCTTTAGTAaatgtaggattctttagattaGCCCCG
TCCCATATCCTTACTAAAACCAACGAAATGTTACCCGATTAAATCGATTC
ATTCAGCGCATCTATCCTTACATGCTAAGCAATAATGTCCACATAATATT
TTTAACATCAATAATGGTAGCACACTAAGACTTATTTCTATTTGCACGCC
ACACATTTATGATAAtacaaattcatgatattcatgacgtaatgttttct
actaaaataccccggttttagccagtagtggcaaattgaagtaaattgta
taaaatttgccactactggcaaaaaccatAGGATATAGGATTCACGGTTT
GAATCCCCGGTCCTTCTCATATTCTGCTCAGTTCTCAGATAGCCGAGCCT
GCTGGCAGTGGACCCCGTTGCCGGGAAAACGAAAGACTCTTCTAGATTAT
TTTATCCACATAAAATATCGACCCTATCTCTATCTGTTTTCCGTGCCAAT
CCAAGGACCCTTAACAGATAATGCAATGTAACCAAAGTCAACGTAGCTGA
TAAAAGCCACACCGATACTAACTTTAAATCTTAGAAGATCGCCATCTATT
AAAAAACTTTCAGTGAAAAATAAACGCAAtcagtatttcaaaagttttca
aagcCTTTCAAACCATTCAAGAACATAAAGTGACAAATATAGAATCGAAA
CGTAAATATACTTTATCGCAAGTTTGCGTGTCGTTGAAACGTAGCGCATT
TACAAGTTATACTGTACTATTTTtaccaaaacttttttcttgaaaaaata
acaataatagaAAAAGAATGAGAGACCCCCATGTCCCTACAATCAATTTT
CCCGACAATCttataattaatttttctaCTATCTGTATATTTTACCGAGA
TGAAAGACCGATAAACCACCAATTAGCAAACTCccttgagaatttttttt
atactaTGAAAAACAATAGCATTCGACAATTCATACATAGGTGTAAGCAT
GAACTTCACAAGATTGAAGTTAGGGGCAATAAGCGCGTCAATTTAGTAGC
GGCTTTTCGTCAATCTATTATTGACGCACACTAGAGAATTTCTAACGTAT
TTATGCCACTCTTTGATATCGTTCCTTAAAAAGAAGCTAAATTCGTGTCC
ACTgcacaaaaaaaattgatctaacacaatcaagtgaaaaaatagttttg
caTTTGTCTCCAAAAATCGCAATCGCATTTTTGAGAAATGATGACATTCT
ATTTTTCTAATAAGAACCGTTAGTCATTTTGTTCTTACTTtgaatgcaaa
atattttaggATATTTAGGAtatatttgagatattttaggcTTCATACCC
TGTTTTACTAGATCGACCcttaatttgtttaaaattcaGTCGTTCCAGGC
TCAGGtccttaatttgttcttaaattgttcttatttttgacatttttgag
tcacattttttttttacaaaactaAAATTTCGATCTGCGTAAGGTGTATT
GTTGGAAAATCTATTTATTTTGATGTCAACGCACAAGATTATGATAATTA
GTATATCCAAACAATAATATAAGGCACAGACGTCATTTAAACAGATTGTT
TTTAGAGAAACACTAAAATATGAGTGAGAcgcaaaaaatgcttttttcat
tttgttcctTGTGTGTCTTTGAAGATGATGTTTTTTGccgaaaaccattt
tttaaaaacaaaaacattaaatttgaaaatgacaGCGAATGACGTCCGCA
AACATTCAAAAGTTTATAGACAAACAGGTTTCGACACAAAATTAACAGGG
ATGCATAAAGTTTGTTGATAACAGTCGGTAAAACCTAAAGGCAATAAAAT
GACTGAAATTGTTTAGCTACTAAGTCATGATATACGTATAACTCTACCAT
ATTTTGTACTGATAAAAGAACATCCGGACCAAAACTGGCAAGATGGTCAA
ATTTCTCAAACTTCATCAACCTGGTCAAAGTACCATCTCAGAAAAGCGCA
AACTTTCCTTCATTCTTCGACCACTCTAATATAAGAGGGCGGTAAGCGTT
ATCTCTCAATGTTATGTCTGAGTTTTTAATTTAAGAGGAATTGATAAGAA
TTTCGGGGACCCAAATGGAAAGACCTAGATTAGGACCTTCGATTGCAATG
CAAATTTCTCATtagtattctttttttttcattagagTAACCGACTGTTC
TAGATTGCCGCCgaagataaaaacaaaacatcaaaacaaggaCCGTCCAA
GAGAGACTTGAAAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036847XLOC_036847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058484-exon-scaffold_311-1491911889:1065404..1066668TCONS_00058484-exon-scaffold_311-1491911889:1065404..1066668Clytia hemisphaericaexon
TCONS_00058484-exon-scaffold_311-1510915933:1065404..1066668TCONS_00058484-exon-scaffold_311-1510915933:1065404..1066668Clytia hemisphaericaexon
TCONS_00058484-exon-scaffold_311-1575043694:1065404..1066668TCONS_00058484-exon-scaffold_311-1575043694:1065404..1066668Clytia hemisphaericaexon
TCONS_00058484-exon-scaffold_311-1491911889:1072489..1072572TCONS_00058484-exon-scaffold_311-1491911889:1072489..1072572Clytia hemisphaericaexon
TCONS_00058484-exon-scaffold_311-1510915933:1072489..1072572TCONS_00058484-exon-scaffold_311-1510915933:1072489..1072572Clytia hemisphaericaexon
TCONS_00058484-exon-scaffold_311-1575043694:1072489..1072572TCONS_00058484-exon-scaffold_311-1575043694:1072489..1072572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1065404..1072572 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.3519	0.404357	0	2.54515	1.00032	4.0822	2.90853	0.887894	4.65742	2.02654	0.245129	4.5948	6.7292	0	0.439755	0	0	22.8336	16.0968	0	1.04139	0	0	0	0.151233	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top