TCONS_00058496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058496
Unique NameTCONS_00058496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058496 ID=TCONS_00058496|Name=TCONS_00058496|organism=Clytia hemisphaerica|type=transcript|length=1065bp
AAATGTTGCAATTCACCATCTTTTACATCCAATGGTGCATTAGAATTTGG
TTGTTGTTGTGAAAATTCATGCAATGATGATGATTTATGTATTTGCCTTG
CTCAACACAGATGTTTTTATGATGAAAAAGGAATACTAGATGTCGACGAG
GTTTCAGAACCACTTTATGAATGCAACCAATGTTGTGAATGTGGTCAAAA
CTGCCGTAACCGAGTTGTCCAAAAAGGATCAAATATTAAATTCAAAGTAA
CAGGAACCACCAACAAAGGATATGGACTAATAACTCAAGAATTCATCCCA
AAAGGGAAATTTGTCATTGAATATATAGGAGAGCGGATCAGTAAAGTTGA
AGCTGCTAACCTTCTCCTCCTTCTCCACGAACAGAATGCATCATGTTACA
TTTATGCACTATTGGAACATTACGGGGATTCACAATTCTCTTATTTCGTA
GATGCGACCAAGACTGGGAACCTAGCTCGTTTTATCAATCATTCTTGTGA
GCCTAATCTCATCCTGGTACCAATACGTGTTAACCAAATTGAGCCAAATT
TTGCTTTATTTGCTGCAAAGGATATTGTGGAAGATACAGAGCTAGCGTTT
TCATATGGTAATGTGGACACACGAGATGGGCAAAAGTTAAAGAAGTGTTT
TTGTGGCGCAAAGTGTTGTAAAGGTTTCCTTCCCTTCAGTGCATCTATTA
CCGTGAAGTAGAGCTGAGtatacagttgagtctccataactcgatcaCGC
GCGGGGAAcccaaatttgttcgagttaaggaaatttcgagttatgtcgag
taaggtttataaagcattgttaactgaagggacgagaaaacttcaAGTTA
AGGAGACAATCGAGTTATAGAGGGTCGAGTTACagagactctactgtaat
aTAAAAATATGGCAGTTTTACGTACCTTACTTTTGCTATCTACTGACTGA
CTGTTGGAACGGAAAGGTCTTTTCCACTATGATTAACGGTAATACCAATg
gttaaaaaaaataagatgcATAAAAAGCAACAGTTACAATGTTAAATAGA
AGTTTTCCATCGGTG
Run BLAST on NCBI

protein sequence of TCONS_00058496-protein

>TCONS_00058496-protein ID=TCONS_00058496-protein|Name=TCONS_00058496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
KCCNSPSFTSNGALEFGCCCENSCNDDDLCICLAQHRCFYDEKGILDVDE
VSEPLYECNQCCECGQNCRNRVVQKGSNIKFKVTGTTNKGYGLITQEFIP
KGKFVIEYIGERISKVEAANLLLLLHEQNASCYIYALLEHYGDSQFSYFV
DATKTGNLARFINHSCEPNLILVPIRVNQIEPNFALFAAKDIVEDTELAF
SYGNVDTRDGQKLKKCFCGAKCCKGFLPFSASITVK
Run BLAST on NCBI

transcript from alignment at scaffold_311:1270504..1271939+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058496 ID=TCONS_00058496|Name=TCONS_00058496|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at scaffold_311:1270504..1271939+ (Clytia hemisphaerica)
AAATGTTGCAATTCACCATCTTTTACATCCAATGGTGCATTAGAATTTGG
TTGTTGTTGTGAAAATTCATGCAATGATGATGATTTATGTATTTGCCTTG
CTCAACACAGATGTTTTTATGATGAAAAAGGAATACTAGATGTCGACGAG
GGTATAGTTTGTCATTTAAAgactttttaaaatgtttttttttcaatatt
agtGTAGACTTTATACCCTAACCTTTTAGATTTACAATTTATACCTCTTG
GCTTCTTGCTTTTCATTTTATGCAGTTGTGATACCAATTTATTTATTAGC
ACATTCAAACAATAGATGTCAGAAAAAGGCTATATGTATGTAGTAATACT
ATCCTGTAATAAAATCTTTAGAAATAAATATACACTCAGACAATTTACAG
TTTATATTGAGTGCATGTCGTCTTTCTCCACTGTATGATACAAAGTATAA
AGCAATCATAGGTTAGTTGTATGATTttcatttcttgaatttttatttca
tttttggtaCTATTCATTTTAGTTTCAGAACCACTTTATGAATGCAACCA
ATGTTGTGAATGTGGTCAAAACTGCCGTAACCGAGTTGTCCAAAAAGGAT
CAAATATTAAATTCAAAGTAACAGGAACCACCAACAAAGGATATGGACTA
ATAACTCAAGAATTCATCCCAAAAGGGAAATTTGTCATTGAATATATAGG
AGAGCGGATCAGTAAAGTTGAAGCTGCTAACCTTCTCCTCCTTCTCCACG
AACAGAATGCATCATGTTACATTTATGCACTATTGGAACATTACGGGGAT
TCACAATTCTCTTATTTCGTAGATGCGACCAAGACTGGGAACCTAGCTCG
TTTTATCAATCATTCTTGTGAGCCTAATCTCATCCTGGTACCAATACGTG
TTAACCAAATTGAGCCAAATTTTGCTTTATTTGCTGCAAAGGATATTGTG
GAAGATACAGAGCTAGCGTTTTCATATGGTAATGTGGACACACGAGATGG
GCAAAAGTTAAAGAAGTGTTTTTGTGGCGCAAAGTGTTGTAAAGGTTTCC
TTCCCTTCAGTGCATCTATTACCGTGAAGTAGAGCTGAGtatacagttga
gtctccataactcgatcaCGCGCGGGGAAcccaaatttgttcgagttaag
gaaatttcgagttatgtcgagtaaggtttataaagcattgttaactgaag
ggacgagaaaacttcaAGTTAAGGAGACAATCGAGTTATAGAGGGTCGAG
TTACagagactctactgtaataTAAAAATATGGCAGTTTTACGTACCTTA
CTTTTGCTATCTACTGACTGACTGTTGGAACGGAAAGGTCTTTTCCACTA
TGATTAACGGTAATACCAATggttaaaaaaaataagatgcATAAAAAGCA
ACAGTTACAATGTTAAATAGAAGTTTTCCATCGGTG

Coding sequence (CDS) from alignment at scaffold_311:1270504..1271939+

>TCONS_00058496 ID=TCONS_00058496|Name=TCONS_00058496|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_311:1270504..1271939+ (Clytia hemisphaerica)
AAATGTTGCAATTCACCATCTTTTACATCCAATGGTGCATTAGAATTTGG
TTGTTGTTGTGAAAATTCATGCAATGATGATGATTTATGTATTTGCCTTG
CTCAACACAGATGTTTTTATGATGAAAAAGGAATACTAGATGTCGACGAG
GTTTCAGAACCACTTTATGAATGCAACCAATGTTGTGAATGTGGTCAAAA
CTGCCGTAACCGAGTTGTCCAAAAAGGATCAAATATTAAATTCAAAGTAA
CAGGAACCACCAACAAAGGATATGGACTAATAACTCAAGAATTCATCCCA
AAAGGGAAATTTGTCATTGAATATATAGGAGAGCGGATCAGTAAAGTTGA
AGCTGCTAACCTTCTCCTCCTTCTCCACGAACAGAATGCATCATGTTACA
TTTATGCACTATTGGAACATTACGGGGATTCACAATTCTCTTATTTCGTA
GATGCGACCAAGACTGGGAACCTAGCTCGTTTTATCAATCATTCTTGTGA
GCCTAATCTCATCCTGGTACCAATACGTGTTAACCAAATTGAGCCAAATT
TTGCTTTATTTGCTGCAAAGGATATTGTGGAAGATACAGAGCTAGCGTTT
TCATATGGTAATGTGGACACACGAGATGGGCAAAAGTTAAAGAAGTGTTT
TTGTGGCGCAAAGTGTTGTAAAGGTTTCCTTCCCTTCAGTGCATCTATTA
CCGTGAAGTAGAAATGTTGCAATTCACCATCTTTTACATCCAATGGTGCA
TTAGAATTTGGTTGTTGTTGTGAAAATTCATGCAATGATGATGATTTATG
TATTTGCCTTGCTCAACACAGATGTTTTTATGATGAAAAAGGAATACTAG
ATGTCGACGAGGTTTCAGAACCACTTTATGAATGCAACCAATGTTGTGAA
TGTGGTCAAAACTGCCGTAACCGAGTTGTCCAAAAAGGATCAAATATTAA
ATTCAAAGTAACAGGAACCACCAACAAAGGATATGGACTAATAACTCAAG
AATTCATCCCAAAAGGGAAATTTGTCATTGAATATATAGGAGAGCGGATC
AGTAAAGTTGAAGCTGCTAACCTTCTCCTCCTTCTCCACGAACAGAATGC
ATCATGTTACATTTATGCACTATTGGAACATTACGGGGATTCACAATTCT
CTTATTTCGTAGATGCGACCAAGACTGGGAACCTAGCTCGTTTTATCAAT
CATTCTTGTGAGCCTAATCTCATCCTGGTACCAATACGTGTTAACCAAAT
TGAGCCAAATTTTGCTTTATTTGCTGCAAAGGATATTGTGGAAGATACAG
AGCTAGCGTTTTCATATGGTAATGTGGACACACGAGATGGGCAAAAGTTA
AAGAAGTGTTTTTGTGGCGCAAAGTGTTGTAAAGGTTTCCTTCCCTTCAG
TGCATCTATTACCGTGAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036854XLOC_036854Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058496-proteinTCONS_00058496-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058496-exon-scaffold_311-1491911889:1270504..1270654TCONS_00058496-exon-scaffold_311-1491911889:1270504..1270654Clytia hemisphaericaexon
TCONS_00058496-exon-scaffold_311-1510915933:1270504..1270654TCONS_00058496-exon-scaffold_311-1510915933:1270504..1270654Clytia hemisphaericaexon
TCONS_00058496-exon-scaffold_311-1575043694:1270504..1270654TCONS_00058496-exon-scaffold_311-1575043694:1270504..1270654Clytia hemisphaericaexon
TCONS_00058496-exon-scaffold_311-1491911889:1271026..1271939TCONS_00058496-exon-scaffold_311-1491911889:1271026..1271939Clytia hemisphaericaexon
TCONS_00058496-exon-scaffold_311-1510915933:1271026..1271939TCONS_00058496-exon-scaffold_311-1510915933:1271026..1271939Clytia hemisphaericaexon
TCONS_00058496-exon-scaffold_311-1575043694:1271026..1271939TCONS_00058496-exon-scaffold_311-1575043694:1271026..1271939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1270504..1271939 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.1586	14.7924	16.3557	15.3202	3.35353	1.9875	7.11103	6.18575	6.67081	5.25298	5.37476	6.62712	4.35518	3.93274	6.24405	7.90513	6.90552	8.2229	3.78899	4.29001	5.2094	4.10463	11.3575	9.7408	9.61172	8.06195	3.25799	3.82103	5.61222	6.3068
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR003616Post-SET_dom
IPR007728Pre-SET_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0018024histone-lysine N-methyltransferase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0034968histone lysine methylation
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034968 histone lysine methylation
cellular_component GO:0005634 nucleus
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00058496 vs. Swiss-Prot (Human)
Match: SETMR (Histone-lysine N-methyltransferase SETMAR OS=Homo sapiens GN=SETMAR PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.469e-33
Identity = 84/191 (43.98%), Postives = 113/191 (59.16%), Query Frame = 1 
Query:   49 GCCCENSCNDDDLCICLAQHRCFYDEKGILDVD---EVSEPLYXXXXXXXXXXXXXXXVVQKGSNIKFKVTGTTNKGYGLITQEFIPKGKFVIEYIGERISKVEAANLLLLLHEQNASCYIYALLEH-YGDSQFSYFVDATKTGNLARFINHSCEPNLILVPIRVNQIEPNFALFAAKDIVEDTELAFSYG 609
            GC C  +      C CL     + D   + D+    + +EP++ECN  C C  +CRNRVVQKG    F+V  T  KG+GL T EFIPKG+FV EY GE +   E    + L   ++ S YI A+ EH Y       FVD T  GN+ RF+NHSCEPNL+++P+R++ + P  ALFAAKDIV + EL++ Y 
Sbjct:   74 GCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHL-QTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYS 263
The following BLAST results are available for this feature:
BLAST of TCONS_00058496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SETMR4.469e-3343.98Histone-lysine N-methyltransferase SETMAR OS=Homo ... [more]
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