TCONS_00058518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058518
Unique NameTCONS_00058518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058518 ID=TCONS_00058518|Name=TCONS_00058518|organism=Clytia hemisphaerica|type=transcript|length=2136bp
CTGGAGACGACTCAATTTATTGTTGATATAAACGAAGGAGTGCTCTTGTT
TGTCATATAAGGAAGAACTATCGGAGCATCTACCTCCATCGTATGGCTTA
TTTATCCTAAATATATTGAAGAATAAACGAACGTCAGTCACctatatttt
catttatttggTGTACGAGAGTAAGAAGAAGTGATctagtaaaaaaaaGA
GTTTGACAAAATGAACATGTTACTCCAAACCATGGTGCTTTTGGGTGTTG
TGCTCTATTCAGTCAAGAGTAAAGACAACAGAACACGCATCGCCAAACGT
TCAGCAAGTGTTTACAGTGTAGAAGGTTGCTTCAGGATGTTTCCACCGGG
TTCTTTGGATTCATCAGACATGGGAATTCATCAAAGTTCCAATATCAGAT
GTCAAGAAATTTGTCGTGATAAAGGATACGTGCTCGCCGCTACTAAAGGC
CAGATGTGTCATTGTTCCAATATTTATCCACGAGGAAAAAAAGTAGTCAA
TCAAGAATGTTCTACAAGATGTCGTTCATATACACCATGCCATGATGTCC
AGAGCTGCTGTGGAGGTCCCAACGCATACTCCGTTAGCGTGGTAGGAGAT
ATTGACGTCGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAAC
GAATATGGGATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACG
ATGCCGATTGGAGATCTTCTATCGAGAATGGAGGCTGGTCGAAATGCAAT
AAGGAACATTACATCAATGGGCTATCAAGAGAAAACCAATACAGTGGATC
GTCGTCTGATCCTCTTGGAAGAATCGATTATGCAAGTTGCCAAAAGGAGC
CTGGAGATCAAGTTTGCAACTATCaatttgcttttcttttcaccaGTGGA
ACGGTTtggaaaacttgtaaacaagGATACTTTATGTCTGGTGTCTTCAC
GCAACCAGGGGCTCAAAAAATCTCCGATCTTGCCCAATTCCATTGTTGCC
GACCCaagaaacaaaaagaacaaTGGGGACAATGTTATAATCACGATGTA
TCTTCATCCTTAGATAATAAAGGTTGGTCTACATGTCGATCCGGATATTT
CATGGCTGGAATGGAACGAGGTGATTGTGATGGTTTACACTGcgtcaatc
aaatcaaatgttGTCAAATGGAAAGCCTGGCTGTCAGTGAAAACCCAAAA
CTGTCCATCAAGCTCAAGGACACCGCAAACAAAGGACAATTGAAAGAATG
CACCATGGAAGGGAGAGATCTTACACCTGAAAGTAAAACCTACGAATGCA
AATCTCTTAATAGTTTAAAAGATGTGGCAAGTTTGGAATCTGTATCTTTC
AAGATGGAAGACGAATCAGATCCTTTGACTTCGAAACCCGAACGTGTCAA
AAATTATATCCCTGTTATCTGTATGCCAAGATCTTATGCTTATGAATGCA
AAAAGGTTCTTGCTGTCTCAATATCATCATCCAGTACTTTCACTATCGGC
TCTGGTTTCTCGATGTCAACAACGTTCGGAGTGAAAACATCTTTCGAAGC
CAACTTCTTTGGTCAAAAGTTCACCAACGAAATCTCCTTTCAGCTGTCAA
TGTCATCATCGTTCGATATTAGCCGCAGTACTACTAGAACCAGAACGGTA
ACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAACCAGCAAGTTAT
GATTGATCTCCTTCGACAGAAAATCGACATCGTTTACAAATGGAGTGGCG
TTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAGACAGCAAAGAAA
GAAGAAACGAAACAAGATATCACAACAGTATTGAGTGGTCCTGATCGTGA
GATGTATGCTTTCGGTAAATGGAAATATCCCAATACTGACGTCTTACAAG
TTGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGTGAACATGCAACA
GGTGTTGATAAAAACTGTCtcattgattgatttaaaatttgaaattgttt
tcttttggcAGTGTGTGTATCGTACCTTTTAACAGAATATATCTTTGAGA
AAGTTTTATCCTATATTTTACCATGTCTTTGAGTAATTCAAGTTTTAAGA
CGTCACCATCAATGACCATAAATCGGTTTTCCTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_311:255704..262451-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058518 ID=TCONS_00058518|Name=TCONS_00058518|organism=Clytia hemisphaerica|type=transcript|length=6748bp|location=Sequence derived from alignment at scaffold_311:255704..262451- (Clytia hemisphaerica)
CTGGAGACGACTCAATTTATTGTTGATATAAACGAAGGAGTGCTCTTGTT TGTCATATAAGGAAGAACTATCGGAGCATCTACCTCCATCGTATGGCTTA TTTATCCTAAATATATTGAAGAATAAACGAACGTCAGTCACCTATATTTT CATTTATTTGGTGTACGAGAGTAAGAAGAAGTGATCTAGTAAAAAAAAGT AGGTAATTTTTCTCTGTATAAAGTTACGACAAAAGTCAAGAAACATCGAT GCTTTTGGTTGTAGTGTGACTGGGTGGTTGTCTTATTTCACACCCCTTTT TCTTACGCCCCTGTGTCACAGACAGAACGGTGGAACTCCCACGCCTCACT GGAAAATTTCAAAATTTTCTTTTCTGATGGGAAATACTTTACAATTTTAG GGCCACCGGAAAATTGACTTTATTATCATATACCCATTGAAAATTAAGGA AATTGATACTTCAATGGATTTTTTCTACAACAGAACTACAAAATATCTGT CTCCATCAGGCATTCGCTAGAAATTTTAATCGCTACTTTGGGAAAAGGTT CCATTGGAGCTGTGAGCCAGGATTGTTTCTGTCCTGTGAATTTGGACAAG AGACAAAAATTTCTATTTCCCCCAGGCAAAATCCTAAGGGCGAAATTTTT TGAAAATTTCTAACTCACTTTTAGACATTATCAAGTATACCATTCGAAAG CTCTCGAAAAACTATATATAAGACTTTTAAACGGTTATAGCCGATTTCCT TACCTAACTCGAGATATTTCATGCGCAAGTTCCACTTTTCGCCACATTTT GGTCTAAAATGACCATAAATANTTTCATGCGCAAGTTCCACTTTTCGCCA CATTTTGGTCTAAAATTGACCATCTATAGCATCTTCTGCGTGAATTATCT TTAGTTAGGTAATGAAATCGGCTTTACCCGTTTAAAAGTCTAGTTTTTCG AGAGCTTTCGAATGGTATACTTGATAATGTCTGAAAATGAGTTTGAAATT TTCAAAAAATTTTGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATGTTC CAAAAAAAGGATGTTCCACCAGTGGGATTTTAGGGGATTTTTTCCTGAGG CATAAAAATCCTATAGAGAAGGTCTGGAGAAAGATTCAGCTGGATCTTAT TTTTTCCCTTAAATGATGCTAAACAACCCCACTATACAGTTAACTCTGTA TGTCTCGATTTAGGAGTTTGACAAAATGAACATGTTACTCCAAACCATGG TGCTTTTGGGTGTTGTGCTCTATTCAGTCAAGAGTAAAGACAACAGAACA CGCATCGCCAAACGTTCAGCAAGTGTTTACAGTGTAGAAGGTTGCTTCAG GTAAGGTGGTTTTCCATTTGTCATTGTACTTTGTCTTTGACTTTTTGATA GTCGGCTTTTCTGAAATTATCAGCTATTTTAGTTAAAAGCAATTTTGCAA ATTAGAGCTTTGAGAAGCAATTGAGGCAATAAATTTAGTGCTCTCTCTCT CCTCCATTACTAAAAATAAATCAACAGCATTTTATTTTCTAAGAGACTAT AGGGCTATAGGCAGTGAAAAAATAACAACATTTGATTGGCTGTGTTTTCA ACTGTCATTAAGATCTGGGAAATTTAAACTCAAACCATATGCTGTTCATT TCGCCATAAGTATATAAGATTTTGGTCAAAATATATTGAGATTTTAGTGT ATTTCAACGTTTTTCAGAATTCAAAGTTCGGGCGAAAATTGCTATTTTGG CACTTTAACTTTCTTTCATTAAATATTTTGATTTTGGAGGAGTTCGTTGG CTTCTAGGCTATATTCCAAGCCTTATTAGAGCAAATTTGAGCCTCCTGAG ATCGTAAGTCTTAAGTCTTAAATCTCTCTCTTATGTTATAATCATCCTAC CGGTAAACAACGTTGTCTCAACGTCCATCTAATGTTCACAACGTCCATAT AACGTTCCCGGGGGGGGGGGGGGCTGGGCAAAAGGACCGACGGGTATGGG CGGGCACTAAGGGTGTCTTTTTCAAGGCACCTCAAATGCACTGTAAGGGT CGGAAAAACTAGAGATGCACTGTAAGGGTAGAAATTTCAGAAAATTCTTG AAAAATCTAGATATTTTGACCAAAAATGCTAGAATTTTGACCATTTTTAG CACGAAAGGGATCGAAAATTTGGGGGAAAATGCACTCTAAGGGTGTGATT TTCACTGATTTTTGCTGCACTGTAAGGGTGCAATTTTAATTGCCAAGTTT TGGCCCGCACATACCGTCAGTCCGCAAACCCAGTGCCCCCCTCCCCCCGG GATAACGTTAGACGAACGTATATGAAACAACGTTGTTTCTGCTGGGTTAT GTCAAGTCAAAAATGAATACAGTCTACACTATAAAAGCTCAGATCATAAC TAATTTTCTTTCCCAGGATGTTTCCACCGGGTTCTTTGGATTCATCAGAC ATGGGAATTCATCAAAGTTCCAATATCAGATGTCAAGAAATTTGTCGTGA TAAAGGATACGTGCTCGCCGCTACTAAAGGTACCGAATTAATGTACATAA GATTTTTGAGAACTTTAGGATATTGGGGAATCGCATTTCATTCTCGCTTC TTTCTTTTATTCGGAAGGGTTTTATTGGCTTCCAGGCTATATTCTCAGCA TTATTGCAACTTTTTTTAAATCATAAAGACCTAAGATTAATCTGTAGTCT AAGATTAAAACAATACATTCCAGAGGTAAGTTTGAACATTTAAAAATCAA TTATTTTTAAGCGCATTCCCTTAATCAAATTTAATGACTAGAATTGTGAC CGTCATGTTATCACAAATACTTATCCTAAGTAGCGTAAGTTGGTCTAATG TCGACATCCCTCTTCTAATTTCGACACCCTTCTTTAGGGATAGGAATTAT AGGAAGGTCGGAATCGCTGATGGAAACTGTTTTTCTTTACTTGGCGATCG ATTGGAAAAAATTTTTTTGTCTATTAGCGATACCGACTTTCCTAATATTC CTGTCTCTAAAGAAGGGTGTCGAGACTAGTAGAGCGATGTCGACATTAGA CTAAGTTACGGTAGCCCAGAACTGTTCCATTCTTTTTACAGGCCAGATGT GTCATTGTTCCAATATTTATCCACGAGGAAAAAAAGTAGTCAATCAAGAA TGTTCTACAAGATGTCGTTCATATACACCATGCCATGATGTCCAGAGCTG CTGTGGAGGTCCCAACGCATACTCCGTTAGCGTGGTAGGAGATATTGACG TCGCCAAACAAACGTTGAGAAGACTGGCCAATAAATGGCAAACGAATATG GGATATCATAATTCAATGTTGAGACATGTTGGATTACTTTACGATGCCGA TTGGAGATCTTCTATCGAGAATGGAGGTTAGACTTTTATTAAAAGCATTC TTTCCCAGCTTGCACACAACGTTGTTTCAACGTTTATCTAACATTCACAA CGTCCATATAACGTTAAATGAACGTTGAAACAACGTTGTGTGCCAGTATT CTATCATCTCAACCCTATAATTACTGAAATTGCAGAAATAGCATTCCGAA ACCATCCCCATTAGATTTTTTAACCTTGGAGCAATAGAATTTTTATCCCC ATTGAGATTTCAATCGAAATTTTCATCCCCGTTGTAGCTGTAGGAAAAAG TTTCACCGGGGCTGCGAGACAGGGGTACGTTTATCGGTGAAAATAAAGTC AGCTTGATAGGCGTATAACATATTTAGGGAGTACTGACTAAAATTGTCTT TAGTTTTTGCAAAATTTTAAATAAATAACACACTTGTTTAAATAAACAAA GCATGCTAAAAATATTTAGAATTTTGAAATAATACAGAGTATTAGTGTAG AAACATGTAGAAACACTATGAGATTCGATCGAGGTAAATCAACTGAAACA GGCCATTTGTTATAAAAAGTGTTTATCTTGTTTTGATACAGGGCTTCCAA ATAGACCTTTTTGATTCTAGGGCCAAATATAAGGCCTGGGGGGGCACTCG ATTTTGAAAACGACCGTACATTCAGCCAAAAATCAGATCTCTAAAATTAC AGTGCAGGAAAAATTTGGCTGAAAATCGACCATTATAGTGCAATTTTTTG AAATTTTGGGCCCTTTTCAGGGCAAAATTGTTTGAAATTTCTCAAATTTC TCAAATTTCCAAAGTCCAAAAAACCTACCCTTAAGGGCTGCACGTCCGGT AGGTCACTTACTTGAAGTGCCCACCCCCCCCCCCCNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNCCCCCCCCCCCCCGGATATAAGGGGACCATTGGA CCATTCATTTCTTTCCTTTTTCTACAATGTATATTGGGTTTCGTTATGGT TAGTCACTAGTTTGTATTTTTTTCAGAGTGTATATAACTTCACTATATAT CTTTTAGGCTGGTCGAAATGCAATAAGGAACATTACATCAATGGGCTATC AAGAGAAAACCAATACAGTGGATCGTCGTCTGATCCTCTTGGAAGAATCG ATTATGCAAGTTGCCAAAAGGAGCCTGGAGATCAAGTTTGCAACTATCAA TTTGCTTTTCTTTTCACCAGTGGAACGGTTTGGAAAACTTGTAAACAAGG ATACTTTATGTCTGGTGTCTTCACGCAACCAGGGGCTCAAAAAATCTCCG ATCTTGCCCAATTCCATTGTTGCCGACCCAAGAAACAAAAAGAACAATGG GGACAATGTTATAATCACGATGTATCTTCATCCTTAGATAATAAAGGTTG GTCTACATGTCGATCCGGATATTTCATGGCTGGAATGGAACGAGGTGATT GTGATGGTTTACACTGCGTCAATCAAATCAAATGTTGTCAAATGGAAAGC CTGGCTGTCAGTGAAAACCCAAAACTGTCCATCAAGCTCAAGGACACCGC AAACAAAGGACAATTGAAAGAATGCACCATGGAAGGGAGAGATCTTACAC CTGAAAGTAAAACCTACGAATGCAAATCTCTTAATAGTTTAAAAGATGTG GCAAGTTTGGAATCTGTATCTTTCAAGATGGAAGACGAATCAGATCCTTT GACTTCGAAACCCGAACGTGTCAAAAATTATATCCCTGTTATCTGTATGC CAAGATCTTATGCTTATGAATGCAAAAAGGTTAAAATATGTTAATTTTGT TTTATGTTTTCTCACGAAGGGCAAGATAGATTGATTTAAAAATCTTTAAA AGTTTAAATATCAGCAACTAGCCGTTTTGAAAAAAAGTTTTCATACTCCT AGGTTCCAAATAGACGCCCAATCCCCCGCTTGTTGATTTTTCGACAATTT TCCAAAGACCCTTTGACCTTCTTAGGACCCCCTGTTTATAAATTTTTAAG AATATTTTCAGCTGCCAAAGGTGTTTATTTTTCTCCAAATAGCCTGATTT TAGCCTACATTTACCTTATTTTTGGGTTTTCAGGAGTACAATTTCCAATC CCCCGCAATTAGCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNCCCCCTCCCCCGTTTATTTGGAACCTAAGAGTATACAATTTTCAGTT TTTCGTTCTCTGACGACATTACGTCAGCCGATAGAAGTGTCAGCACTTAT ACTTATTAGTCAGTTATTTGGCGATAACCTCAGTTTTCTTGTTAACAAAT TTGTTTCAGTGTAGCAGGCGATTTTGGTCTTTTCTGTAAGGCATAATCGA CAATTTTTCGTTTCTGGGGTGTCCGCAGGTGCTTTCCTAGCGACTCTCAA GGTTATCGTGGGTGTGAATTTTTTTCTTTATTTATAACAATTGTTTTCTT TTCGTATATCCCATCAGGTTCTTGCTGTCTCAATATCATCATCCAGTACT TTCACTATCGGCTCTGGTTTCTCGATGTCAACAACGTTCGGAGTGAAAAC ATCTTTCGAAGCCAACTTCTTTGGTCAAAAGTTCACCAACGAAATCTCCT TTCAGCTGTCAATGTCATCATCGTTCGATATTAGCCGCAGTACTACTAGA ACCAGAACGGTAACCGATACAACATGGGTGACCGTTAAGGTTCCAGCTAA CCAGCAAGTTATGATTGATCTCCTTCGACAGAAAATCGACATCGTTTACA AATGGAGTGGCGTTTTTCGTCTTCTTGGTAAATACAAAATGAATTGGCAG ACAGCAAAGAAAGAAGAAACGAAACAAGATATCACAACAGTATTGAGTGG TCCTGATCGTGAGATGTATGCTTTCGGTAAATGGAAATATCCCAATACTG ACGTCTTACAAGTTGTGGTGACTGATAAATATGGTGAGAAGAAAGGATGT GAACATGCAACAGGTGTTGATAAAAACTGTCTCATTGATTGATTTAAAAT TTGAAATTGTTTTCTTTTGGCAGTGTGTGTATCGTACCTTTTAACAGAAT ATATCTTTGAGAAAGTTTTATCCTATATTTTACCATGTCTTTGAGTAATT CAAGTTTTAAGACGTCACCATCAATGACCATAAATCGGTTTTCCTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036866XLOC_036866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058518-exon-scaffold_311-1575043694:262254..262451TCONS_00058518-exon-scaffold_311-1575043694:262254..262451Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1575043694:261102..261238TCONS_00058518-exon-scaffold_311-1575043694:261102..261238Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1575043694:259923..260035TCONS_00058518-exon-scaffold_311-1575043694:259923..260035Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1575043694:259076..259360TCONS_00058518-exon-scaffold_311-1575043694:259076..259360Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1575043694:257223..257944TCONS_00058518-exon-scaffold_311-1575043694:257223..257944Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1575043694:255704..256384TCONS_00058518-exon-scaffold_311-1575043694:255704..256384Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1510915933:262254..262451TCONS_00058518-exon-scaffold_311-1510915933:262254..262451Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1510915933:261102..261238TCONS_00058518-exon-scaffold_311-1510915933:261102..261238Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1510915933:259923..260035TCONS_00058518-exon-scaffold_311-1510915933:259923..260035Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1510915933:259076..259360TCONS_00058518-exon-scaffold_311-1510915933:259076..259360Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1510915933:257223..257944TCONS_00058518-exon-scaffold_311-1510915933:257223..257944Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1510915933:255704..256384TCONS_00058518-exon-scaffold_311-1510915933:255704..256384Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1491911889:262254..262451TCONS_00058518-exon-scaffold_311-1491911889:262254..262451Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1491911889:261102..261238TCONS_00058518-exon-scaffold_311-1491911889:261102..261238Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1491911889:259923..260035TCONS_00058518-exon-scaffold_311-1491911889:259923..260035Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1491911889:259076..259360TCONS_00058518-exon-scaffold_311-1491911889:259076..259360Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1491911889:257223..257944TCONS_00058518-exon-scaffold_311-1491911889:257223..257944Clytia hemisphaericaexon
TCONS_00058518-exon-scaffold_311-1491911889:255704..256384TCONS_00058518-exon-scaffold_311-1491911889:255704..256384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:255704..262451 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0416915 0 0.252089 0.319739 0 0.132958 0 0.204595 0.108239 0 21.0622 19.165 15.466 38.5347 4.76264 4.05164 60.8909 64.2251 19.8959 19.0404 17.5463 18.4332 4.49275 3.83925 0.461263 0.526132 16.277 26.1127
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top